RNA–Protein interactions for RNA: ENST00000540663.5

SYNE1-238, Transcript of spectrin repeat containing nuclear envelope protein 1, human

TSL 4

Gene SYNE1, Length 776 nt, Biotype protein coding, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE1-238	ENST00000540663	TMEM240	Q5SV17	173 aa		13.51	□□□□□ -0.25
SYNE1-238	ENST00000540663	FAM109B	Q6ICB4	259 aa	Predicted RBP	13.51	□□□□□ -0.25
SYNE1-238	ENST00000540663	RPUSD2	Q8IZ73	545 aa	Known RBP	13.51	□□□□□ -0.25
SYNE1-238	ENST00000540663	CAGE1	Q8TC20	777 aa		13.51	□□□□□ -0.25
SYNE1-238	ENST00000540663	PHKB	Q93100	1093 aa		13.51	□□□□□ -0.25
SYNE1-238	ENST00000540663	GPR20	Q99678	358 aa		13.51	□□□□□ -0.25
SYNE1-238	ENST00000540663	SLC26A6	Q9BXS9	759 aa		13.51	□□□□□ -0.25
SYNE1-238	ENST00000540663	ANO3	Q9BYT9	981 aa		13.51	□□□□□ -0.25
SYNE1-238	ENST00000540663	MTIF3	Q9H2K0	278 aa	Known RBP	13.51	□□□□□ -0.25
SYNE1-238	ENST00000540663	NCOA5	Q9HCD5	579 aa	Known RBP	13.51	□□□□□ -0.25
SYNE1-238	ENST00000540663	SH3GLB2	Q9NR46	395 aa		13.51	□□□□□ -0.25
SYNE1-238	ENST00000540663	GTF2IRD1	Q9UHL9	959 aa		13.51	□□□□□ -0.25
SYNE1-238	ENST00000540663	UMODL1	Q5DID0	1318 aa		13.5	□□□□□ -0.25
SYNE1-238	ENST00000540663	CPLX1	O14810	134 aa		13.5	□□□□□ -0.25
SYNE1-238	ENST00000540663	LGALS2	P05162	132 aa		13.5	□□□□□ -0.25
SYNE1-238	ENST00000540663	KCNA2	P16389	499 aa		13.5	□□□□□ -0.25
SYNE1-238	ENST00000540663	CCL23	P55773	120 aa		13.5	□□□□□ -0.25
SYNE1-238	ENST00000540663	SSRP1	Q08945	709 aa	Known RBP	13.5	□□□□□ -0.25
SYNE1-238	ENST00000540663	PTGIS	Q16647	500 aa		13.5	□□□□□ -0.25
SYNE1-238	ENST00000540663	CEP55	Q53EZ4	464 aa		13.5	□□□□□ -0.25
SYNE1-238	ENST00000540663	GDF6	Q6KF10	455 aa	Predicted RBP	13.5	□□□□□ -0.25
SYNE1-238	ENST00000540663	NIPA1	Q7RTP0	329 aa		13.5	□□□□□ -0.25
SYNE1-238	ENST00000540663	REXO1	Q8N1G1	1221 aa	Known RBP	13.5	□□□□□ -0.25
SYNE1-238	ENST00000540663	RETREG2	Q8NC44	543 aa		13.5	□□□□□ -0.25
SYNE1-238	ENST00000540663	BUD13	Q9BRD0	619 aa	Known RBP eCLIP	13.5	□□□□□ -0.25
SYNE1-238	ENST00000540663	MXRA8	Q9BRK3	442 aa		13.5	□□□□□ -0.25
SYNE1-238	ENST00000540663	C16orf70	Q9BSU1	422 aa		13.5	□□□□□ -0.25
SYNE1-238	ENST00000540663	ALG1	Q9BT22	464 aa		13.5	□□□□□ -0.25
SYNE1-238	ENST00000540663	WNT8A	Q9H1J5	351 aa		13.5	□□□□□ -0.25
SYNE1-238	ENST00000540663	HDAC6	Q9UBN7	1215 aa		13.5	□□□□□ -0.25
SYNE1-238	ENST00000540663	ZNF215	Q9UL58	517 aa	Predicted RBP	13.5	□□□□□ -0.25
SYNE1-238	ENST00000540663		H3BRB1	525 aa		13.49	□□□□□ -0.25
SYNE1-238	ENST00000540663	SORBS3	O60504	671 aa		13.49	□□□□□ -0.25
SYNE1-238	ENST00000540663	CDKL5	O76039	1030 aa		13.49	□□□□□ -0.25
SYNE1-238	ENST00000540663	PARN	O95453	639 aa	Known RBP	13.49	□□□□□ -0.25
SYNE1-238	ENST00000540663	ARHGAP4	P98171	946 aa		13.49	□□□□□ -0.25
SYNE1-238	ENST00000540663	RBL2	Q08999	1139 aa		13.49	□□□□□ -0.25
SYNE1-238	ENST00000540663	PTK7	Q13308	1070 aa		13.49	□□□□□ -0.25
SYNE1-238	ENST00000540663	RASIP1	Q5U651	963 aa		13.49	□□□□□ -0.25
SYNE1-238	ENST00000540663	C16orf59	Q7L2K0	433 aa		13.49	□□□□□ -0.25
SYNE1-238	ENST00000540663	AFAP1L1	Q8TED9	768 aa		13.49	□□□□□ -0.25
SYNE1-238	ENST00000540663	HERVK_113	Q902F9	699 aa		13.49	□□□□□ -0.25
SYNE1-238	ENST00000540663	TUT1	Q9H6E5	874 aa	Known RBP	13.49	□□□□□ -0.25
SYNE1-238	ENST00000540663	BCAS3	Q9H6U6	928 aa		13.49	□□□□□ -0.25
SYNE1-238	ENST00000540663	NFASC	O94856	1347 aa		13.48	□□□□□ -0.25
SYNE1-238	ENST00000540663	MEIS1	O00470	390 aa		13.48	□□□□□ -0.25
SYNE1-238	ENST00000540663	DEXI	O95424	95 aa		13.48	□□□□□ -0.25
SYNE1-238	ENST00000540663	FGB	P02675	491 aa		13.48	□□□□□ -0.25
SYNE1-238	ENST00000540663	CYP3A4	P08684	503 aa		13.48	□□□□□ -0.25
SYNE1-238	ENST00000540663	GNAT1	P11488	350 aa		13.48	□□□□□ -0.25
SYNE1-238	ENST00000540663	HOXC8	P31273	242 aa		13.48	□□□□□ -0.25
SYNE1-238	ENST00000540663	ZNF365	Q70YC5	407 aa		13.48	□□□□□ -0.25
SYNE1-238	ENST00000540663	DEFB123	Q8N688	67 aa		13.48	□□□□□ -0.25
SYNE1-238	ENST00000540663	PPP1R13L	Q8WUF5	828 aa		13.48	□□□□□ -0.25
SYNE1-238	ENST00000540663	SEPT1	Q8WYJ6	367 aa		13.48	□□□□□ -0.25
SYNE1-238	ENST00000540663	CTAGE1	Q96RT6	745 aa		13.48	□□□□□ -0.25
SYNE1-238	ENST00000540663	KCNH7	Q9NS40	1196 aa		13.48	□□□□□ -0.25
SYNE1-238	ENST00000540663	TMEM260	Q9NX78	707 aa		13.48	□□□□□ -0.25
SYNE1-238	ENST00000540663	TANC1	Q9C0D5	1861 aa		13.47	□□□□□ -0.25
SYNE1-238	ENST00000540663	TMEM265	A0A087WTH1	108 aa		13.47	□□□□□ -0.25
SYNE1-238	ENST00000540663	HSFX4	A0A1B0GTS1	333 aa	Predicted RBP	13.47	□□□□□ -0.25
SYNE1-238	ENST00000540663	HSFX3	A0A1B0GWH4	333 aa	Predicted RBP	13.47	□□□□□ -0.25
SYNE1-238	ENST00000540663	PFKFB2	O60825	505 aa		13.47	□□□□□ -0.25
SYNE1-238	ENST00000540663	ATP9A	O75110	1047 aa		13.47	□□□□□ -0.25
SYNE1-238	ENST00000540663	IQCF3	P0C7M6	154 aa		13.47	□□□□□ -0.25
SYNE1-238	ENST00000540663	ACR	P10323	421 aa		13.47	□□□□□ -0.25
SYNE1-238	ENST00000540663	ZNF76	P36508	570 aa		13.47	□□□□□ -0.25
SYNE1-238	ENST00000540663	JAKMIP3	Q5VZ66	844 aa		13.47	□□□□□ -0.25
SYNE1-238	ENST00000540663	CRYGN	Q8WXF5	182 aa		13.47	□□□□□ -0.25
SYNE1-238	ENST00000540663	SCLY	Q96I15	445 aa		13.47	□□□□□ -0.25
SYNE1-238	ENST00000540663	PGBD1	Q96JS3	809 aa		13.47	□□□□□ -0.25
SYNE1-238	ENST00000540663	SDF4	Q9BRK5	362 aa		13.47	□□□□□ -0.25
SYNE1-238	ENST00000540663	SLK	Q9H2G2	1235 aa	Predicted RBP	13.47	□□□□□ -0.25
SYNE1-238	ENST00000540663	JPH1	Q9HDC5	661 aa	Predicted RBP	13.47	□□□□□ -0.25
SYNE1-238	ENST00000540663	STK36	Q9NRP7	1315 aa		13.46	□□□□□ -0.25
SYNE1-238	ENST00000540663	C17orf102	A2RUQ5	167 aa		13.46	□□□□□ -0.25
SYNE1-238	ENST00000540663	SMIM10L2A	P0DMW4	78 aa		13.46	□□□□□ -0.25
SYNE1-238	ENST00000540663	SMIM10L2B	P0DMW5	78 aa		13.46	□□□□□ -0.25
SYNE1-238	ENST00000540663	ACTN1	P12814	892 aa		13.46	□□□□□ -0.25
SYNE1-238	ENST00000540663	SELP	P16109	830 aa		13.46	□□□□□ -0.25
SYNE1-238	ENST00000540663	TCF7	P36402	384 aa	Predicted RBP	13.46	□□□□□ -0.25
SYNE1-238	ENST00000540663	NLRP5	P59047	1200 aa		13.46	□□□□□ -0.25
SYNE1-238	ENST00000540663	SET	Q01105	290 aa	Predicted RBP	13.46	□□□□□ -0.25
SYNE1-238	ENST00000540663	SP4	Q02446	784 aa		13.46	□□□□□ -0.25
SYNE1-238	ENST00000540663	STK3	Q13188	491 aa		13.46	□□□□□ -0.25
SYNE1-238	ENST00000540663	UTP14C	Q5TAP6	766 aa	Known RBP	13.46	□□□□□ -0.25
SYNE1-238	ENST00000540663	GALNT17	Q6IS24	598 aa		13.46	□□□□□ -0.25
SYNE1-238	ENST00000540663	SERINC5	Q86VE9	423 aa		13.46	□□□□□ -0.25
SYNE1-238	ENST00000540663	DHX38	Q92620	1227 aa	Known RBP	13.46	□□□□□ -0.25
SYNE1-238	ENST00000540663	LARP6	Q9BRS8	491 aa	Known RBP	13.46	□□□□□ -0.25
SYNE1-238	ENST00000540663	C22orf23	Q9BZE7	217 aa		13.46	□□□□□ -0.25
SYNE1-238	ENST00000540663	SMARCAD1	Q9H4L7	1026 aa		13.46	□□□□□ -0.25
SYNE1-238	ENST00000540663	AGO4	Q9HCK5	861 aa	Known RBP	13.46	□□□□□ -0.25
SYNE1-238	ENST00000540663	VPS54	Q9P1Q0	977 aa		13.46	□□□□□ -0.25
SYNE1-238	ENST00000540663	SLC9A2	Q9UBY0	812 aa		13.46	□□□□□ -0.25
SYNE1-238	ENST00000540663	EMSY	Q7Z589	1322 aa		13.45	□□□□□ -0.26
SYNE1-238	ENST00000540663	DOCK5	Q9H7D0	1870 aa		13.45	□□□□□ -0.26
SYNE1-238	ENST00000540663	GSTTP1	A0A1W2PQM5	241 aa		13.45	□□□□□ -0.26
SYNE1-238	ENST00000540663	CAND2	O75155	1236 aa		13.45	□□□□□ -0.26
SYNE1-238	ENST00000540663	CKB	P12277	381 aa		13.45	□□□□□ -0.26

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