RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 COG1Q8WTW3 980 aa18.75■□□□□ 0.59
USP28-208ENST00000540438 RABGGTAQ92696 567 aa18.75■□□□□ 0.59
USP28-208ENST00000540438 FUT8Q9BYC5 575 aa18.75■□□□□ 0.59
USP28-208ENST00000540438 RAB34Q9BZG1 259 aa18.75■□□□□ 0.59
USP28-208ENST00000540438 HDAC7Q8WUI4 952 aa18.74■□□□□ 0.59
USP28-208ENST00000540438 IFIH1Q9BYX4 1025 aaKnown RBP18.74■□□□□ 0.59
USP28-208ENST00000540438 ZNF277Q9NRM2 450 aaPredicted RBP18.74■□□□□ 0.59
USP28-208ENST00000540438 PI4KBQ9UBF8 816 aa18.74■□□□□ 0.59
USP28-208ENST00000540438 FXR2P51116 673 aaKnown RBP eCLIP18.74■□□□□ 0.59
USP28-208ENST00000540438 RDH13Q8NBN7 331 aa18.74■□□□□ 0.59
USP28-208ENST00000540438 MS4A14Q96JA4 679 aa18.74■□□□□ 0.59
USP28-208ENST00000540438 LSM14BQ9BX40 385 aaKnown RBP18.74■□□□□ 0.59
USP28-208ENST00000540438 BHMT2Q9H2M3 363 aa18.74■□□□□ 0.59
USP28-208ENST00000540438 HOMER2Q9NSB8 354 aa18.74■□□□□ 0.59
USP28-208ENST00000540438 ZBTB21Q9ULJ3 1066 aa18.74■□□□□ 0.59
USP28-208ENST00000540438 NHSQ6T4R5 1651 aa18.74■□□□□ 0.59
USP28-208ENST00000540438 YDJCA8MPS7 323 aa18.74■□□□□ 0.59
USP28-208ENST00000540438 RGL2O15211 777 aa18.74■□□□□ 0.59
USP28-208ENST00000540438 PDE6BP35913 854 aa18.74■□□□□ 0.59
USP28-208ENST00000540438 ZBED6P86452 979 aa18.74■□□□□ 0.59
USP28-208ENST00000540438 RAPGEF1Q13905 1077 aa18.74■□□□□ 0.59
USP28-208ENST00000540438 ARSHQ5FYA8 562 aa18.74■□□□□ 0.59
USP28-208ENST00000540438 CCDC102AQ96A19 550 aa18.74■□□□□ 0.59
USP28-208ENST00000540438 FZD1Q9UP38 647 aa18.74■□□□□ 0.59
USP28-208ENST00000540438 EML1O00423 815 aa18.73■□□□□ 0.59
USP28-208ENST00000540438 MYBP10242 640 aa18.73■□□□□ 0.59
USP28-208ENST00000540438 KIF11P52732 1056 aa18.73■□□□□ 0.59
USP28-208ENST00000540438 EN1Q05925 392 aaPredicted RBP18.73■□□□□ 0.59
USP28-208ENST00000540438 KCNMA1Q12791 1236 aa18.73■□□□□ 0.59
USP28-208ENST00000540438 FAM83BQ5T0W9 1011 aa18.73■□□□□ 0.59
USP28-208ENST00000540438 GJB7Q6PEY0 223 aa18.73■□□□□ 0.59
USP28-208ENST00000540438 LRRC55Q6ZSA7 311 aa18.73■□□□□ 0.59
USP28-208ENST00000540438 TUBB4AP04350 444 aa18.73■□□□□ 0.59
USP28-208ENST00000540438 SPA17Q15506 151 aa18.73■□□□□ 0.59
USP28-208ENST00000540438 GPATCH4Q5T3I0 446 aaKnown RBP18.73■□□□□ 0.59
USP28-208ENST00000540438 TPH2Q8IWU9 490 aa18.73■□□□□ 0.59
USP28-208ENST00000540438 PACSIN1Q9BY11 444 aa18.73■□□□□ 0.59
USP28-208ENST00000540438 RABEP2Q9H5N1 569 aa18.73■□□□□ 0.59
USP28-208ENST00000540438 SAR1BQ9Y6B6 198 aa18.73■□□□□ 0.59
USP28-208ENST00000540438 MYH7BA7E2Y1 1941 aa18.73■□□□□ 0.59
USP28-208ENST00000540438 SPDYE3A6NKU9 549 aa18.72■□□□□ 0.59
USP28-208ENST00000540438 SORBS3O60504 671 aa18.72■□□□□ 0.59
USP28-208ENST00000540438 MYBL2P10244 700 aa18.72■□□□□ 0.59
USP28-208ENST00000540438 CLK2P49760 499 aaKnown RBP18.72■□□□□ 0.59
USP28-208ENST00000540438 SFR1Q86XK3 245 aa18.72■□□□□ 0.59
USP28-208ENST00000540438 FAM133AQ8N9E0 248 aa18.72■□□□□ 0.59
USP28-208ENST00000540438 TMEM39BQ9GZU3 492 aa18.72■□□□□ 0.59
USP28-208ENST00000540438 KLRG2A4D1S0 409 aaPredicted RBP18.72■□□□□ 0.59
USP28-208ENST00000540438 CYLC1P35663 651 aaPredicted RBP18.72■□□□□ 0.59
USP28-208ENST00000540438 CASP4P49662 377 aa18.72■□□□□ 0.59
USP28-208ENST00000540438 KIF5AQ12840 1032 aa18.72■□□□□ 0.59
USP28-208ENST00000540438 ADAM9Q13443 819 aa18.72■□□□□ 0.59
USP28-208ENST00000540438 TRIM14Q14142 442 aa18.72■□□□□ 0.59
USP28-208ENST00000540438 ZC2HC1CQ53FD0 456 aaPredicted RBP18.72■□□□□ 0.59
USP28-208ENST00000540438 FBXO11Q86XK2 927 aa18.72■□□□□ 0.59
USP28-208ENST00000540438 SCFD1Q8WVM8 642 aa18.72■□□□□ 0.59
USP28-208ENST00000540438 ELMO3Q96BJ8 720 aa18.72■□□□□ 0.59
USP28-208ENST00000540438 SIK3Q9Y2K2 1263 aa18.72■□□□□ 0.59
USP28-208ENST00000540438 A0A1W2PQC6 194 aa18.71■□□□□ 0.59
USP28-208ENST00000540438 ESYT2A0FGR8 921 aa18.71■□□□□ 0.59
USP28-208ENST00000540438 RBAK-RBAKDNI3L0D1 243 aa18.71■□□□□ 0.59
USP28-208ENST00000540438 CYP11B2P19099 503 aa18.71■□□□□ 0.59
USP28-208ENST00000540438 HHIPL2Q6UWX4 724 aa18.71■□□□□ 0.59
USP28-208ENST00000540438 EMILIN3Q9NT22 766 aa18.71■□□□□ 0.59
USP28-208ENST00000540438 VPS18Q9P253 973 aa18.71■□□□□ 0.59
USP28-208ENST00000540438 SWAP70Q9UH65 585 aa18.71■□□□□ 0.59
USP28-208ENST00000540438 PCDHB13Q9Y5F0 798 aa18.71■□□□□ 0.59
USP28-208ENST00000540438 KRT86O43790 486 aa18.71■□□□□ 0.59
USP28-208ENST00000540438 FTCDO95954 541 aa18.71■□□□□ 0.59
USP28-208ENST00000540438 SLC9A1P19634 815 aa18.71■□□□□ 0.59
USP28-208ENST00000540438 AMPD2Q01433 879 aa18.71■□□□□ 0.59
USP28-208ENST00000540438 CEP112Q8N8E3 955 aa18.71■□□□□ 0.59
USP28-208ENST00000540438 ZDHHC15Q96MV8 337 aa18.71■□□□□ 0.59
USP28-208ENST00000540438 CUEDC2Q9H467 287 aa18.71■□□□□ 0.59
USP28-208ENST00000540438 XPO5Q9HAV4 1204 aaKnown RBP eCLIP18.71■□□□□ 0.59
USP28-208ENST00000540438 PCDHA13Q9Y5I0 950 aa18.71■□□□□ 0.59
USP28-208ENST00000540438 UBR3Q6ZT12 1888 aa18.71■□□□□ 0.59
USP28-208ENST00000540438 EPS15P42566 896 aa18.71■□□□□ 0.59
USP28-208ENST00000540438 FAM114A1Q8IWE2 563 aa18.71■□□□□ 0.59
USP28-208ENST00000540438 CPXCR1Q8N123 301 aa18.71■□□□□ 0.59
USP28-208ENST00000540438 ADAMTS1Q9UHI8 967 aa18.71■□□□□ 0.59
USP28-208ENST00000540438 NOVP48745 357 aa18.7■□□□□ 0.58
USP28-208ENST00000540438 MAST2Q6P0Q8 1798 aa18.7■□□□□ 0.58
USP28-208ENST00000540438 PODNQ7Z5L7 613 aa18.7■□□□□ 0.58
USP28-208ENST00000540438 REEP2Q9BRK0 252 aa18.7■□□□□ 0.58
USP28-208ENST00000540438 RUSC1Q9BVN2 902 aa18.7■□□□□ 0.58
USP28-208ENST00000540438 OPLAHO14841 1288 aa18.7■□□□□ 0.58
USP28-208ENST00000540438 MAGEA1P43355 309 aa18.7■□□□□ 0.58
USP28-208ENST00000540438 COG2Q14746 738 aa18.7■□□□□ 0.58
USP28-208ENST00000540438 MAN2A1Q16706 1144 aa18.7■□□□□ 0.58
USP28-208ENST00000540438 TMEM119Q4V9L6 283 aa18.7■□□□□ 0.58
USP28-208ENST00000540438 SECISBP2LQ93073 1101 aaKnown RBP18.7■□□□□ 0.58
USP28-208ENST00000540438 HAUS4Q9H6D7 363 aa18.7■□□□□ 0.58
USP28-208ENST00000540438 STK17AQ9UEE5 414 aa18.7■□□□□ 0.58
USP28-208ENST00000540438 LRRIQ3A6PVS8 624 aaPredicted RBP18.69■□□□□ 0.58
USP28-208ENST00000540438 NR2F2P24468 414 aa18.69■□□□□ 0.58
USP28-208ENST00000540438 GUF1Q8N442 669 aaKnown RBP18.69■□□□□ 0.58
USP28-208ENST00000540438 TSG101Q99816 390 aa18.69■□□□□ 0.58
USP28-208ENST00000540438 UTP18Q9Y5J1 556 aaKnown RBP eCLIP18.69■□□□□ 0.58
USP28-208ENST00000540438 SCN9AQ15858 1988 aa18.69■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms