RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 ZNF200P98182 395 aaPredicted RBP14.5□□□□□ -0.09
CLSTN3-208ENST00000538933 SMAD4Q13485 552 aaKnown RBP14.5□□□□□ -0.09
CLSTN3-208ENST00000538933 NECTIN1Q15223 517 aa14.5□□□□□ -0.09
CLSTN3-208ENST00000538933 LY6KQ17RY6 165 aa14.5□□□□□ -0.09
CLSTN3-208ENST00000538933 PLEKHG4Q58EX7 1191 aa14.5□□□□□ -0.09
CLSTN3-208ENST00000538933 RNF207Q6ZRF8 634 aa14.5□□□□□ -0.09
CLSTN3-208ENST00000538933 RALYLQ86SE5 291 aaKnown RBP14.5□□□□□ -0.09
CLSTN3-208ENST00000538933 DNERQ8NFT8 737 aa14.5□□□□□ -0.09
CLSTN3-208ENST00000538933 TBC1D32Q96NH3 1257 aa14.5□□□□□ -0.09
CLSTN3-208ENST00000538933 OSBPL7Q9BZF2 842 aa14.5□□□□□ -0.09
CLSTN3-208ENST00000538933 RNF41Q9H4P4 317 aaPredicted RBP14.5□□□□□ -0.09
CLSTN3-208ENST00000538933 LOC101059915A0A1B0GWI6 518 aaPredicted RBP14.49□□□□□ -0.09
CLSTN3-208ENST00000538933 LOC730098B7Z3J9 87 aa14.49□□□□□ -0.09
CLSTN3-208ENST00000538933 PROB1E7EW31 1015 aa14.49□□□□□ -0.09
CLSTN3-208ENST00000538933 CYP21A2P08686 494 aa14.49□□□□□ -0.09
CLSTN3-208ENST00000538933 CASTP20810 708 aaKnown RBP14.49□□□□□ -0.09
CLSTN3-208ENST00000538933 GTF2F1P35269 517 aaKnown RBP eCLIP14.49□□□□□ -0.09
CLSTN3-208ENST00000538933 RBM25P49756 843 aaKnown RBP14.49□□□□□ -0.09
CLSTN3-208ENST00000538933 PSEN2P49810 448 aa14.49□□□□□ -0.09
CLSTN3-208ENST00000538933 ANAPC15P60006 121 aa14.49□□□□□ -0.09
CLSTN3-208ENST00000538933 CTDSPL2Q05D32 466 aa14.49□□□□□ -0.09
CLSTN3-208ENST00000538933 PDE4BQ07343 736 aa14.49□□□□□ -0.09
CLSTN3-208ENST00000538933 MFSD6Q6ZSS7 791 aa14.49□□□□□ -0.09
CLSTN3-208ENST00000538933 DNAH14Q0VDD8 3507 aa14.49□□□□□ -0.09
CLSTN3-208ENST00000538933 KMT2BQ9UMN6 2715 aaPredicted RBP14.49□□□□□ -0.09
CLSTN3-208ENST00000538933 EMSYQ7Z589 1322 aa14.48□□□□□ -0.09
CLSTN3-208ENST00000538933 C5orf67F2Z3F1 127 aa14.48□□□□□ -0.09
CLSTN3-208ENST00000538933 GRM6O15303 877 aa14.48□□□□□ -0.09
CLSTN3-208ENST00000538933 LINC01565O15544 149 aa14.48□□□□□ -0.09
CLSTN3-208ENST00000538933 EYA4O95677 639 aa14.48□□□□□ -0.09
CLSTN3-208ENST00000538933 GH1P01241 217 aa14.48□□□□□ -0.09
CLSTN3-208ENST00000538933 PSMA5P28066 241 aa14.48□□□□□ -0.09
CLSTN3-208ENST00000538933 VCPP55072 806 aaKnown RBP14.48□□□□□ -0.09
CLSTN3-208ENST00000538933 ADAM15Q13444 863 aa14.48□□□□□ -0.09
CLSTN3-208ENST00000538933 CBX2Q14781 532 aaPredicted RBP14.48□□□□□ -0.09
CLSTN3-208ENST00000538933 RRP12Q5JTH9 1297 aaKnown RBP14.48□□□□□ -0.09
CLSTN3-208ENST00000538933 SUGP1Q8IWZ8 645 aaKnown RBP14.48□□□□□ -0.09
CLSTN3-208ENST00000538933 C7orf31Q8N865 590 aa14.48□□□□□ -0.09
CLSTN3-208ENST00000538933 MSLNLQ96KJ4 702 aa14.48□□□□□ -0.09
CLSTN3-208ENST00000538933 INCENPQ9NQS7 918 aa14.48□□□□□ -0.09
CLSTN3-208ENST00000538933 STX8Q9UNK0 236 aa14.48□□□□□ -0.09
CLSTN3-208ENST00000538933 DDX52Q9Y2R4 599 aaKnown RBP eCLIP14.48□□□□□ -0.09
CLSTN3-208ENST00000538933 SNX14Q9Y5W7 946 aa14.48□□□□□ -0.09
CLSTN3-208ENST00000538933 EPG5Q9HCE0 2579 aa14.47□□□□□ -0.09
CLSTN3-208ENST00000538933 F2P00734 622 aa14.47□□□□□ -0.09
CLSTN3-208ENST00000538933 CAMK1Q14012 370 aa14.47□□□□□ -0.09
CLSTN3-208ENST00000538933 DGKDQ16760 1214 aa14.47□□□□□ -0.09
CLSTN3-208ENST00000538933 SYDE2Q5VT97 1194 aa14.47□□□□□ -0.09
CLSTN3-208ENST00000538933 SERINC5Q86VE9 423 aa14.47□□□□□ -0.09
CLSTN3-208ENST00000538933 NCOA7Q8NI08 942 aa14.47□□□□□ -0.09
CLSTN3-208ENST00000538933 DCAF4Q8WV16 495 aa14.47□□□□□ -0.09
CLSTN3-208ENST00000538933 EMID1Q96A84 441 aaPredicted RBP14.47□□□□□ -0.09
CLSTN3-208ENST00000538933 ASIC4Q96FT7 647 aa14.47□□□□□ -0.09
CLSTN3-208ENST00000538933 JAKMIP1Q96N16 626 aaKnown RBP14.47□□□□□ -0.09
CLSTN3-208ENST00000538933 YME1L1Q96TA2 773 aa14.47□□□□□ -0.09
CLSTN3-208ENST00000538933 ALG1Q9BT22 464 aa14.47□□□□□ -0.09
CLSTN3-208ENST00000538933 KRT23Q9C075 422 aa14.47□□□□□ -0.09
CLSTN3-208ENST00000538933 LMAN2LQ9H0V9 348 aa14.47□□□□□ -0.09
CLSTN3-208ENST00000538933 CNNM2Q9H8M5 875 aa14.47□□□□□ -0.09
CLSTN3-208ENST00000538933 CD207Q9UJ71 328 aa14.47□□□□□ -0.09
CLSTN3-208ENST00000538933 RSPH10B2B2RC85 870 aa14.46□□□□□ -0.09
CLSTN3-208ENST00000538933 E7EWF7 191 aa14.46□□□□□ -0.09
CLSTN3-208ENST00000538933 UPP2O95045 317 aa14.46□□□□□ -0.09
CLSTN3-208ENST00000538933 RB1P06400 928 aa14.46□□□□□ -0.09
CLSTN3-208ENST00000538933 RSPH10BP0C881 870 aa14.46□□□□□ -0.09
CLSTN3-208ENST00000538933 PCP11498 1178 aaKnown RBP14.46□□□□□ -0.09
CLSTN3-208ENST00000538933 AVPR2P30518 371 aa14.46□□□□□ -0.09
CLSTN3-208ENST00000538933 MFSD10Q14728 455 aa14.46□□□□□ -0.09
CLSTN3-208ENST00000538933 KIAA0753Q2KHM9 967 aa14.46□□□□□ -0.09
CLSTN3-208ENST00000538933 BLOC1S2Q6QNY1 142 aa14.46□□□□□ -0.09
CLSTN3-208ENST00000538933 CHST3Q7LGC8 479 aa14.46□□□□□ -0.09
CLSTN3-208ENST00000538933 ASCL5Q7RTU5 278 aa14.46□□□□□ -0.09
CLSTN3-208ENST00000538933 RASEFQ8IZ41 740 aa14.46□□□□□ -0.09
CLSTN3-208ENST00000538933 RGS22Q8NE09 1264 aa14.46□□□□□ -0.09
CLSTN3-208ENST00000538933 ATOH1Q92858 354 aaPredicted RBP14.46□□□□□ -0.09
CLSTN3-208ENST00000538933 NEK1Q96PY6 1258 aa14.46□□□□□ -0.09
CLSTN3-208ENST00000538933 MPHOSPH6Q99547 160 aaKnown RBP14.46□□□□□ -0.09
CLSTN3-208ENST00000538933 CLEC1BQ9P126 229 aa14.46□□□□□ -0.09
CLSTN3-208ENST00000538933 DDX41Q9UJV9 622 aaKnown RBP14.46□□□□□ -0.09
CLSTN3-208ENST00000538933 ANAPC4Q9UJX5 808 aa14.46□□□□□ -0.09
CLSTN3-208ENST00000538933 HMGB1P09429 215 aaKnown RBP14.45□□□□□ -0.1
CLSTN3-208ENST00000538933 HOXD8P13378 290 aaPredicted RBP14.45□□□□□ -0.1
CLSTN3-208ENST00000538933 BMPR1AP36894 532 aa14.45□□□□□ -0.1
CLSTN3-208ENST00000538933 FGD1P98174 961 aa14.45□□□□□ -0.1
CLSTN3-208ENST00000538933 TSGA10IPQ3SY00 556 aa14.45□□□□□ -0.1
CLSTN3-208ENST00000538933 PPP4R3BQ5MIZ7 849 aa14.45□□□□□ -0.1
CLSTN3-208ENST00000538933 SEPT14Q6ZU15 432 aa14.45□□□□□ -0.1
CLSTN3-208ENST00000538933 ERMP1Q7Z2K6 904 aa14.45□□□□□ -0.1
CLSTN3-208ENST00000538933 TBC1D10CQ8IV04 446 aa14.45□□□□□ -0.1
CLSTN3-208ENST00000538933 TBC1D5Q92609 795 aa14.45□□□□□ -0.1
CLSTN3-208ENST00000538933 IRF2BPLQ9H1B7 796 aa14.45□□□□□ -0.1
CLSTN3-208ENST00000538933 MTMR7Q9Y216 660 aa14.45□□□□□ -0.1
CLSTN3-208ENST00000538933 CACNA1BQ00975 2339 aa14.44□□□□□ -0.1
CLSTN3-208ENST00000538933 B4DLN1 442 aa14.44□□□□□ -0.1
CLSTN3-208ENST00000538933 RANBP6O60518 1105 aaKnown RBP14.44□□□□□ -0.1
CLSTN3-208ENST00000538933 ZNF286BP0CG31 522 aa14.44□□□□□ -0.1
CLSTN3-208ENST00000538933 HOXC8P31273 242 aa14.44□□□□□ -0.1
CLSTN3-208ENST00000538933 THPOP40225 353 aa14.44□□□□□ -0.1
CLSTN3-208ENST00000538933 MRPL12P52815 198 aaKnown RBP14.44□□□□□ -0.1
CLSTN3-208ENST00000538933 SIGLEC14Q08ET2 396 aa14.44□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms