RNA–Protein interactions for RNA: ENST00000535607.5

USP28-202, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 683 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-202ENST00000535607 ZRSR1Q15695 479 aaKnown RBP7.58□□□□□ -1.2
USP28-202ENST00000535607 BBS9Q3SYG4 887 aa7.58□□□□□ -1.2
USP28-202ENST00000535607 CYP27C1Q4G0S4 372 aa7.58□□□□□ -1.2
USP28-202ENST00000535607 LETMD1Q6P1Q0 360 aa7.58□□□□□ -1.2
USP28-202ENST00000535607 TMCO3Q6UWJ1 677 aa7.58□□□□□ -1.2
USP28-202ENST00000535607 CCDC150Q8NCX0 1101 aa7.58□□□□□ -1.2
USP28-202ENST00000535607 HNRNPLLQ8WVV9 542 aaKnown RBP7.58□□□□□ -1.2
USP28-202ENST00000535607 STK31Q9BXU1 1019 aa7.58□□□□□ -1.2
USP28-202ENST00000535607 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP7.58□□□□□ -1.2
USP28-202ENST00000535607 PHAXQ9H814 394 aaKnown RBP7.58□□□□□ -1.2
USP28-202ENST00000535607 FAM53CQ9NYF3 392 aa7.58□□□□□ -1.2
USP28-202ENST00000535607 CFAP45Q9UL16 551 aa7.58□□□□□ -1.2
USP28-202ENST00000535607 CYP46A1Q9Y6A2 500 aa7.58□□□□□ -1.2
USP28-202ENST00000535607 SCN11AQ9UI33 1791 aa7.58□□□□□ -1.2
USP28-202ENST00000535607 GLI3P10071 1580 aa7.58□□□□□ -1.2
USP28-202ENST00000535607 TCHHQ07283 1943 aa7.58□□□□□ -1.2
USP28-202ENST00000535607 RAD50Q92878 1312 aa7.57□□□□□ -1.2
USP28-202ENST00000535607 CACNA1FO60840 1977 aa7.57□□□□□ -1.2
USP28-202ENST00000535607 SIPA1L3O60292 1781 aaPredicted RBP7.57□□□□□ -1.2
USP28-202ENST00000535607 GNAT3A8MTJ3 354 aa7.57□□□□□ -1.2
USP28-202ENST00000535607 TNFRSF10CO14798 259 aa7.57□□□□□ -1.2
USP28-202ENST00000535607 RGS13O14921 159 aa7.57□□□□□ -1.2
USP28-202ENST00000535607 SMARCA5O60264 1052 aaPredicted RBP7.57□□□□□ -1.2
USP28-202ENST00000535607 CYP2C19P33261 490 aa7.57□□□□□ -1.2
USP28-202ENST00000535607 RNF4P78317 190 aa7.57□□□□□ -1.2
USP28-202ENST00000535607 RBL2Q08999 1139 aa7.57□□□□□ -1.2
USP28-202ENST00000535607 CDK5R2Q13319 367 aa7.57□□□□□ -1.2
USP28-202ENST00000535607 STX1AQ16623 288 aa7.57□□□□□ -1.2
USP28-202ENST00000535607 PLA2G4EQ3MJ16 856 aa7.57□□□□□ -1.2
USP28-202ENST00000535607 MUM1L1Q5H9M0 696 aa7.57□□□□□ -1.2
USP28-202ENST00000535607 C1orf141Q5JVX7 400 aa7.57□□□□□ -1.2
USP28-202ENST00000535607 JAKMIP3Q5VZ66 844 aa7.57□□□□□ -1.2
USP28-202ENST00000535607 ATL3Q6DD88 541 aa7.57□□□□□ -1.2
USP28-202ENST00000535607 RUFY4Q6ZNE9 571 aa7.57□□□□□ -1.2
USP28-202ENST00000535607 NOL8Q76FK4 1167 aaKnown RBP7.57□□□□□ -1.2
USP28-202ENST00000535607 TTC6Q86TZ1 520 aa7.57□□□□□ -1.2
USP28-202ENST00000535607 C17orf53Q8N3J3 647 aaPredicted RBP7.57□□□□□ -1.2
USP28-202ENST00000535607 TOP6BLQ8N6T0 577 aa7.57□□□□□ -1.2
USP28-202ENST00000535607 USHBP1Q8N6Y0 703 aa7.57□□□□□ -1.2
USP28-202ENST00000535607 TSPYL6Q8N831 410 aa7.57□□□□□ -1.2
USP28-202ENST00000535607 C8orf58Q8NAV2 365 aa7.57□□□□□ -1.2
USP28-202ENST00000535607 KIF1BPQ96EK5 621 aa7.57□□□□□ -1.2
USP28-202ENST00000535607 PHACTR3Q96KR7 559 aa7.57□□□□□ -1.2
USP28-202ENST00000535607 CLSTN2Q9H4D0 955 aa7.57□□□□□ -1.2
USP28-202ENST00000535607 YY1AP1Q9H869 796 aa7.57□□□□□ -1.2
USP28-202ENST00000535607 PDRG1Q9NUG6 133 aa7.57□□□□□ -1.2
USP28-202ENST00000535607 BABAM1Q9NWV8 329 aa7.57□□□□□ -1.2
USP28-202ENST00000535607 SIRPGQ9P1W8 387 aa7.57□□□□□ -1.2
USP28-202ENST00000535607 AFF2P51816 1311 aa7.56□□□□□ -1.2
USP28-202ENST00000535607 ELL2O00472 640 aaPredicted RBP7.56□□□□□ -1.2
USP28-202ENST00000535607 DDAH1O94760 285 aa7.56□□□□□ -1.2
USP28-202ENST00000535607 IVLP07476 585 aa7.56□□□□□ -1.2
USP28-202ENST00000535607 SKILP12757 684 aa7.56□□□□□ -1.2
USP28-202ENST00000535607 GJB2P29033 226 aa7.56□□□□□ -1.2
USP28-202ENST00000535607 CASP7P55210 303 aa7.56□□□□□ -1.2
USP28-202ENST00000535607 ATP8B2P98198 1209 aa7.56□□□□□ -1.2
USP28-202ENST00000535607 SNW1Q13573 536 aaKnown RBP7.56□□□□□ -1.2
USP28-202ENST00000535607 MTHFSDQ2M296 383 aaKnown RBP7.56□□□□□ -1.2
USP28-202ENST00000535607 ANO6Q4KMQ2 910 aa7.56□□□□□ -1.2
USP28-202ENST00000535607 ZNF530Q6P9A1 599 aaPredicted RBP7.56□□□□□ -1.2
USP28-202ENST00000535607 PRR23CQ6ZRP0 262 aa7.56□□□□□ -1.2
USP28-202ENST00000535607 LRRC8AQ8IWT6 810 aa7.56□□□□□ -1.2
USP28-202ENST00000535607 IFNL2Q8IZJ0 200 aa7.56□□□□□ -1.2
USP28-202ENST00000535607 FBXL6Q8N531 539 aa7.56□□□□□ -1.2
USP28-202ENST00000535607 MNS1Q8NEH6 495 aa7.56□□□□□ -1.2
USP28-202ENST00000535607 ZSCAN16Q9H4T2 348 aaPredicted RBP7.56□□□□□ -1.2
USP28-202ENST00000535607 C7orf69Q9H7B7 122 aa7.56□□□□□ -1.2
USP28-202ENST00000535607 ATG3Q9NT62 314 aa7.56□□□□□ -1.2
USP28-202ENST00000535607 ANO10Q9NW15 660 aa7.56□□□□□ -1.2
USP28-202ENST00000535607 GTF2IRD1Q9UHL9 959 aa7.56□□□□□ -1.2
USP28-202ENST00000535607 TRPC5Q9UL62 973 aaPredicted RBP7.56□□□□□ -1.2
USP28-202ENST00000535607 KDM3BQ7LBC6 1761 aa7.56□□□□□ -1.2
USP28-202ENST00000535607 PAPPAQ13219 1627 aa7.56□□□□□ -1.2
USP28-202ENST00000535607 BCL9O00512 1426 aa7.55□□□□□ -1.2
USP28-202ENST00000535607 KDM6AO15550 1401 aaPredicted RBP7.55□□□□□ -1.2
USP28-202ENST00000535607 HMX2A2RU54 273 aa7.55□□□□□ -1.2
USP28-202ENST00000535607 VPS37CA5D8V6 355 aaPredicted RBP7.55□□□□□ -1.2
USP28-202ENST00000535607 GOLGA6L9A6NEM1 432 aa7.55□□□□□ -1.2
USP28-202ENST00000535607 CCDC85CA6NKD9 419 aa7.55□□□□□ -1.2
USP28-202ENST00000535607 FAM87AP0C7U9 286 aa7.55□□□□□ -1.2
USP28-202ENST00000535607 NAT2P11245 290 aa7.55□□□□□ -1.2
USP28-202ENST00000535607 AK2P54819 239 aa7.55□□□□□ -1.2
USP28-202ENST00000535607 RAB33AQ14088 237 aa7.55□□□□□ -1.2
USP28-202ENST00000535607 ZNF772Q68DY9 489 aaPredicted RBP7.55□□□□□ -1.2
USP28-202ENST00000535607 UNC5AQ6ZN44 842 aa7.55□□□□□ -1.2
USP28-202ENST00000535607 RBM43Q6ZSC3 357 aaKnown RBP7.55□□□□□ -1.2
USP28-202ENST00000535607 UBE3DQ7Z6J8 389 aa7.55□□□□□ -1.2
USP28-202ENST00000535607 BAHD1Q8TBE0 780 aaPredicted RBP7.55□□□□□ -1.2
USP28-202ENST00000535607 OTUD7AQ8TE49 926 aaPredicted RBP7.55□□□□□ -1.2
USP28-202ENST00000535607 COX4I2Q96KJ9 171 aa7.55□□□□□ -1.2
USP28-202ENST00000535607 TTC14Q96N46 770 aa7.55□□□□□ -1.2
USP28-202ENST00000535607 UPF3BQ9BZI7 483 aaKnown RBP7.55□□□□□ -1.2
USP28-202ENST00000535607 MKRN2Q9H000 416 aaKnown RBP7.55□□□□□ -1.2
USP28-202ENST00000535607 OSBPL2Q9H1P3 480 aa7.55□□□□□ -1.2
USP28-202ENST00000535607 ZSWIM4Q9H7M6 989 aa7.55□□□□□ -1.2
USP28-202ENST00000535607 MTMR6Q9Y217 621 aa7.55□□□□□ -1.2
USP28-202ENST00000535607 N4BP2Q86UW6 1770 aaPredicted RBP7.55□□□□□ -1.2
USP28-202ENST00000535607 TOGARAM1Q9Y4F4 1720 aa7.55□□□□□ -1.2
USP28-202ENST00000535607 PXDNLA1KZ92 1463 aa7.55□□□□□ -1.2
USP28-202ENST00000535607 TTC41PQ6P2S7 1318 aa7.54□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms