RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 RABEP1Q15276 862 aa14.82□□□□□ -0.04
VPS28-216ENST00000533806 GALNT17Q6IS24 598 aa14.82□□□□□ -0.04
VPS28-216ENST00000533806 NFRKBQ6P4R8 1299 aa14.82□□□□□ -0.04
VPS28-216ENST00000533806 CHRDL2Q6WN34 429 aa14.82□□□□□ -0.04
VPS28-216ENST00000533806 CYFIP1Q7L576 1253 aa14.82□□□□□ -0.04
VPS28-216ENST00000533806 RASGRP4Q8TDF6 673 aa14.82□□□□□ -0.04
VPS28-216ENST00000533806 GPR20Q99678 358 aa14.82□□□□□ -0.04
VPS28-216ENST00000533806 C16orf70Q9BSU1 422 aa14.82□□□□□ -0.04
VPS28-216ENST00000533806 MLXIPQ9HAP2 919 aa14.82□□□□□ -0.04
VPS28-216ENST00000533806 GJB4Q9NTQ9 266 aa14.82□□□□□ -0.04
VPS28-216ENST00000533806 ORC3Q9UBD5 711 aaPredicted RBP14.82□□□□□ -0.04
VPS28-216ENST00000533806 LAMA3Q16787 3333 aa14.81□□□□□ -0.04
VPS28-216ENST00000533806 SORBS3O60504 671 aa14.81□□□□□ -0.04
VPS28-216ENST00000533806 JAK2O60674 1132 aa14.81□□□□□ -0.04
VPS28-216ENST00000533806 ARP10275 920 aa14.81□□□□□ -0.04
VPS28-216ENST00000533806 PTPN11Q06124 597 aaPredicted RBP14.81□□□□□ -0.04
VPS28-216ENST00000533806 SESTD1Q86VW0 696 aa14.81□□□□□ -0.04
VPS28-216ENST00000533806 BLIDQ8IZY5 108 aa14.81□□□□□ -0.04
VPS28-216ENST00000533806 GIMAP8Q8ND71 665 aaPredicted RBP14.81□□□□□ -0.04
VPS28-216ENST00000533806 ZSCAN31Q96LW9 406 aaPredicted RBP14.81□□□□□ -0.04
VPS28-216ENST00000533806 TRPV6Q9H1D0 765 aa14.81□□□□□ -0.04
VPS28-216ENST00000533806 KCNJ14Q9UNX9 436 aa14.81□□□□□ -0.04
VPS28-216ENST00000533806 SCN10AQ9Y5Y9 1956 aa14.81□□□□□ -0.04
VPS28-216ENST00000533806 B4GALT4O60513 344 aa14.8□□□□□ -0.04
VPS28-216ENST00000533806 ITGB3BPQ13352 177 aaPredicted RBP14.8□□□□□ -0.04
VPS28-216ENST00000533806 LENG9Q96B70 501 aa14.8□□□□□ -0.04
VPS28-216ENST00000533806 CTAGE1Q96RT6 745 aa14.8□□□□□ -0.04
VPS28-216ENST00000533806 UPF2Q9HAU5 1272 aaKnown RBP14.8□□□□□ -0.04
VPS28-216ENST00000533806 AGO4Q9HCK5 861 aaKnown RBP14.8□□□□□ -0.04
VPS28-216ENST00000533806 TMEM39AQ9NV64 488 aa14.8□□□□□ -0.04
VPS28-216ENST00000533806 GSTTP1A0A1W2PQM5 241 aa14.79□□□□□ -0.04
VPS28-216ENST00000533806 DHX15O43143 795 aaKnown RBP14.79□□□□□ -0.04
VPS28-216ENST00000533806 NFASCO94856 1347 aa14.79□□□□□ -0.04
VPS28-216ENST00000533806 CD2BP2O95400 341 aaKnown RBP14.79□□□□□ -0.04
VPS28-216ENST00000533806 ZNF286BP0CG31 522 aa14.79□□□□□ -0.04
VPS28-216ENST00000533806 HOXC8P31273 242 aa14.79□□□□□ -0.04
VPS28-216ENST00000533806 USP11P51784 963 aa14.79□□□□□ -0.04
VPS28-216ENST00000533806 PPP1R13LQ8WUF5 828 aa14.79□□□□□ -0.04
VPS28-216ENST00000533806 WASF1Q92558 559 aa14.79□□□□□ -0.04
VPS28-216ENST00000533806 LLPHQ9BRT6 129 aaKnown RBP14.79□□□□□ -0.04
VPS28-216ENST00000533806 ALG1Q9BT22 464 aa14.79□□□□□ -0.04
VPS28-216ENST00000533806 PRDM5Q9NQX1 630 aaPredicted RBP14.79□□□□□ -0.04
VPS28-216ENST00000533806 SH2B1Q9NRF2 756 aaPredicted RBP14.79□□□□□ -0.04
VPS28-216ENST00000533806 CYP3A7-CYP3A51PA0A087WV96 503 aa14.78□□□□□ -0.04
VPS28-216ENST00000533806 TLR3O15455 904 aaKnown RBP14.78□□□□□ -0.04
VPS28-216ENST00000533806 TIMP1P01033 207 aa14.78□□□□□ -0.04
VPS28-216ENST00000533806 LGALS2P05162 132 aa14.78□□□□□ -0.04
VPS28-216ENST00000533806 CYP3A7P24462 503 aa14.78□□□□□ -0.04
VPS28-216ENST00000533806 PSEN2P49810 448 aa14.78□□□□□ -0.04
VPS28-216ENST00000533806 MDM2Q00987 491 aaPredicted RBP14.78□□□□□ -0.04
VPS28-216ENST00000533806 HABP4Q5JVS0 413 aaKnown RBP14.78□□□□□ -0.04
VPS28-216ENST00000533806 CCDC83Q8IWF9 413 aa14.78□□□□□ -0.04
VPS28-216ENST00000533806 OXER1Q8TDS5 423 aa14.78□□□□□ -0.04
VPS28-216ENST00000533806 TBCKQ8TEA7 893 aa14.78□□□□□ -0.04
VPS28-216ENST00000533806 BADQ92934 168 aa14.78□□□□□ -0.04
VPS28-216ENST00000533806 TNFRSF25Q93038 417 aa14.78□□□□□ -0.04
VPS28-216ENST00000533806 MBOAT7Q96N66 472 aa14.78□□□□□ -0.04
VPS28-216ENST00000533806 TRMT13Q9NUP7 481 aaKnown RBP14.78□□□□□ -0.04
VPS28-216ENST00000533806 PRKAG2Q9UGJ0 569 aa14.78□□□□□ -0.04
VPS28-216ENST00000533806 LAMA2P24043 3122 aaKnown RBP14.78□□□□□ -0.04
VPS28-216ENST00000533806 A0A1W2PPC1 479 aa14.77□□□□□ -0.05
VPS28-216ENST00000533806 H3BRB1 525 aa14.77□□□□□ -0.05
VPS28-216ENST00000533806 ATG7O95352 703 aa14.77□□□□□ -0.05
VPS28-216ENST00000533806 SUPT20HL2P0C7V6 817 aa14.77□□□□□ -0.05
VPS28-216ENST00000533806 RAG1P15918 1043 aa14.77□□□□□ -0.05
VPS28-216ENST00000533806 XBP1P17861 261 aa14.77□□□□□ -0.05
VPS28-216ENST00000533806 HIC1Q14526 733 aa14.77□□□□□ -0.05
VPS28-216ENST00000533806 MFSD10Q14728 455 aa14.77□□□□□ -0.05
VPS28-216ENST00000533806 KIAA0753Q2KHM9 967 aa14.77□□□□□ -0.05
VPS28-216ENST00000533806 PLA2G4DQ86XP0 818 aa14.77□□□□□ -0.05
VPS28-216ENST00000533806 SEPT1Q8WYJ6 367 aa14.77□□□□□ -0.05
VPS28-216ENST00000533806 NOC4LQ9BVI4 516 aaKnown RBP14.77□□□□□ -0.05
VPS28-216ENST00000533806 KATNAL1Q9BW62 490 aa14.77□□□□□ -0.05
VPS28-216ENST00000533806 TUT1Q9H6E5 874 aaKnown RBP14.77□□□□□ -0.05
VPS28-216ENST00000533806 GTF2IRD1Q9UHL9 959 aa14.77□□□□□ -0.05
VPS28-216ENST00000533806 TRIOBPQ9H2D6 2365 aa14.77□□□□□ -0.05
VPS28-216ENST00000533806 NOP56O00567 594 aaKnown RBP14.76□□□□□ -0.05
VPS28-216ENST00000533806 LGR5O75473 907 aa14.76□□□□□ -0.05
VPS28-216ENST00000533806 CCNE2O96020 404 aa14.76□□□□□ -0.05
VPS28-216ENST00000533806 TCF7P36402 384 aaPredicted RBP14.76□□□□□ -0.05
VPS28-216ENST00000533806 ZNF76P36508 570 aa14.76□□□□□ -0.05
VPS28-216ENST00000533806 GDF6Q6KF10 455 aaPredicted RBP14.76□□□□□ -0.05
VPS28-216ENST00000533806 MFSD5Q6N075 450 aa14.76□□□□□ -0.05
VPS28-216ENST00000533806 MOXD1Q6UVY6 613 aa14.76□□□□□ -0.05
VPS28-216ENST00000533806 KRT25Q7Z3Z0 450 aa14.76□□□□□ -0.05
VPS28-216ENST00000533806 VWCEQ96DN2 955 aa14.76□□□□□ -0.05
VPS28-216ENST00000533806 PCYT2Q99447 389 aa14.76□□□□□ -0.05
VPS28-216ENST00000533806 JPH1Q9HDC5 661 aaPredicted RBP14.76□□□□□ -0.05
VPS28-216ENST00000533806 PKD2L1Q9P0L9 805 aa14.76□□□□□ -0.05
VPS28-216ENST00000533806 HDAC6Q9UBN7 1215 aa14.76□□□□□ -0.05
VPS28-216ENST00000533806 SLC9A2Q9UBY0 812 aa14.76□□□□□ -0.05
VPS28-216ENST00000533806 LTBP2Q14767 1821 aa14.76□□□□□ -0.05
VPS28-216ENST00000533806 UMODL1Q5DID0 1318 aa14.75□□□□□ -0.05
VPS28-216ENST00000533806 IGKV6D-21A0A0A0MT36 114 aa14.75□□□□□ -0.05
VPS28-216ENST00000533806 IPO5O00410 1097 aaKnown RBP14.75□□□□□ -0.05
VPS28-216ENST00000533806 ST18O60284 1047 aa14.75□□□□□ -0.05
VPS28-216ENST00000533806 MMP1P03956 469 aa14.75□□□□□ -0.05
VPS28-216ENST00000533806 CYP2C9P11712 490 aa14.75□□□□□ -0.05
VPS28-216ENST00000533806 EPHB4P54760 987 aa14.75□□□□□ -0.05
VPS28-216ENST00000533806 ACTR2P61160 394 aa14.75□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms