RNA–Protein interactions for RNA: ENST00000533299.2

LMO7-223, Transcript of LIM domain 7, human

TSL 3

Gene LMO7, Length 1,845 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LMO7-223	ENST00000533299	CBX2	Q14781	532 aa	Predicted RBP	4.81	□□□□□ -1.64
LMO7-223	ENST00000533299	KIR3DS1	Q14943	382 aa		4.81	□□□□□ -1.64
LMO7-223	ENST00000533299	EGFLAM	Q63HQ2	1017 aa		4.81	□□□□□ -1.64
LMO7-223	ENST00000533299	C16orf59	Q7L2K0	433 aa		4.81	□□□□□ -1.64
LMO7-223	ENST00000533299	AHI1	Q8N157	1196 aa		4.81	□□□□□ -1.64
LMO7-223	ENST00000533299	SLC16A11	Q8NCK7	471 aa		4.81	□□□□□ -1.64
LMO7-223	ENST00000533299	MFSD3	Q96ES6	412 aa		4.81	□□□□□ -1.64
LMO7-223	ENST00000533299	TRIM39	Q9HCM9	518 aa		4.81	□□□□□ -1.64
LMO7-223	ENST00000533299	PPP1R11	O60927	126 aa	Predicted RBP	4.8	□□□□□ -1.64
LMO7-223	ENST00000533299	MAPKAPK2	P49137	400 aa		4.8	□□□□□ -1.64
LMO7-223	ENST00000533299	HMGA2	P52926	109 aa		4.8	□□□□□ -1.64
LMO7-223	ENST00000533299	GYS2	P54840	703 aa		4.8	□□□□□ -1.64
LMO7-223	ENST00000533299	DLG4	P78352	724 aa		4.8	□□□□□ -1.64
LMO7-223	ENST00000533299	CRY1	Q16526	586 aa		4.8	□□□□□ -1.64
LMO7-223	ENST00000533299	TKFC	Q3LXA3	575 aa		4.8	□□□□□ -1.64
LMO7-223	ENST00000533299	RNF187	Q5TA31	235 aa	Predicted RBP	4.8	□□□□□ -1.64
LMO7-223	ENST00000533299	ZC3H14	Q6PJT7	736 aa	Known RBP	4.8	□□□□□ -1.64
LMO7-223	ENST00000533299	NLRP10	Q86W26	655 aa		4.8	□□□□□ -1.64
LMO7-223	ENST00000533299	CLUHP3	Q96NS8	147 aa		4.8	□□□□□ -1.64
LMO7-223	ENST00000533299	KCNJ15	Q99712	375 aa		4.8	□□□□□ -1.64
LMO7-223	ENST00000533299	IPPK	Q9H8X2	491 aa		4.8	□□□□□ -1.64
LMO7-223	ENST00000533299	CATSPERZ	Q9NTU4	200 aa		4.8	□□□□□ -1.64
LMO7-223	ENST00000533299	TCRBV16S1A1N1	A0A5B0	115 aa		4.79	□□□□□ -1.64
LMO7-223	ENST00000533299	WNT9A	O14904	365 aa		4.79	□□□□□ -1.64
LMO7-223	ENST00000533299	HGS	O14964	777 aa	Predicted RBP	4.79	□□□□□ -1.64
LMO7-223	ENST00000533299	SRGAP2C	P0DJJ0	459 aa		4.79	□□□□□ -1.64
LMO7-223	ENST00000533299	TNFRSF1A	P19438	455 aa		4.79	□□□□□ -1.64
LMO7-223	ENST00000533299	DALRD3	Q5D0E6	543 aa	Known RBP	4.79	□□□□□ -1.64
LMO7-223	ENST00000533299	TMEM132E	Q6IEE7	984 aa		4.79	□□□□□ -1.64
LMO7-223	ENST00000533299	CYP4F22	Q6NT55	531 aa		4.79	□□□□□ -1.64
LMO7-223	ENST00000533299	PHOSPHO1	Q8TCT1	267 aa		4.79	□□□□□ -1.64
LMO7-223	ENST00000533299	SLITRK6	Q9H5Y7	841 aa		4.79	□□□□□ -1.64
LMO7-223	ENST00000533299	ZNF552	Q9H707	407 aa	Predicted RBP	4.79	□□□□□ -1.64
LMO7-223	ENST00000533299	PALD1	Q9ULE6	856 aa		4.79	□□□□□ -1.64
LMO7-223	ENST00000533299	PEX10	O60683	326 aa		4.79	□□□□□ -1.64
LMO7-223	ENST00000533299	RASGRP1	O95267	797 aa		4.79	□□□□□ -1.64
LMO7-223	ENST00000533299	EFEMP2	O95967	443 aa		4.79	□□□□□ -1.64
LMO7-223	ENST00000533299	STEAP3	Q658P3	488 aa		4.79	□□□□□ -1.64
LMO7-223	ENST00000533299	ZNF605	Q86T29	641 aa		4.79	□□□□□ -1.64
LMO7-223	ENST00000533299	TRIM48	Q8IWZ4	208 aa		4.79	□□□□□ -1.64
LMO7-223	ENST00000533299	PPM1K	Q8N3J5	372 aa		4.79	□□□□□ -1.64
LMO7-223	ENST00000533299	PCDH19	Q8TAB3	1148 aa		4.79	□□□□□ -1.64
LMO7-223	ENST00000533299	JAM3	Q9BX67	310 aa		4.79	□□□□□ -1.64
LMO7-223	ENST00000533299	SMOC1	Q9H4F8	434 aa		4.79	□□□□□ -1.64
LMO7-223	ENST00000533299	SLC6A20	Q9NP91	592 aa		4.79	□□□□□ -1.64
LMO7-223	ENST00000533299	SIRT5	Q9NXA8	310 aa		4.79	□□□□□ -1.64
LMO7-223	ENST00000533299	FBXL7	Q9UJT9	491 aa		4.79	□□□□□ -1.64
LMO7-223	ENST00000533299	KCTD3	Q9Y597	815 aa		4.79	□□□□□ -1.64
LMO7-223	ENST00000533299	ZC3H12D	A2A288	527 aa	Known RBP	4.78	□□□□□ -1.64
LMO7-223	ENST00000533299	DNM2	P50570	870 aa		4.78	□□□□□ -1.64
LMO7-223	ENST00000533299	YBX1	P67809	324 aa	Known RBP	4.78	□□□□□ -1.64
LMO7-223	ENST00000533299	PLP2	Q04941	152 aa		4.78	□□□□□ -1.64
LMO7-223	ENST00000533299	C21orf62-AS1	Q17RA5	79 aa		4.78	□□□□□ -1.64
LMO7-223	ENST00000533299	CFAP100	Q494V2	611 aa		4.78	□□□□□ -1.64
LMO7-223	ENST00000533299	CNNM4	Q6P4Q7	775 aa		4.78	□□□□□ -1.64
LMO7-223	ENST00000533299	RPTN	Q6XPR3	784 aa		4.78	□□□□□ -1.64
LMO7-223	ENST00000533299	OTOP3	Q7RTS5	596 aa		4.78	□□□□□ -1.64
LMO7-223	ENST00000533299	FGD2	Q7Z6J4	655 aa		4.78	□□□□□ -1.64
LMO7-223	ENST00000533299	LRRTM3	Q86VH5	581 aa		4.78	□□□□□ -1.64
LMO7-223	ENST00000533299	DHX37	Q8IY37	1157 aa	Known RBP	4.78	□□□□□ -1.64
LMO7-223	ENST00000533299	NLGN4X	Q8N0W4	816 aa		4.78	□□□□□ -1.64
LMO7-223	ENST00000533299	PPIL4	Q8WUA2	492 aa	Known RBP eCLIP	4.78	□□□□□ -1.64
LMO7-223	ENST00000533299	SCLY	Q96I15	445 aa		4.78	□□□□□ -1.64
LMO7-223	ENST00000533299	WNK4	Q96J92	1243 aa		4.78	□□□□□ -1.64
LMO7-223	ENST00000533299	CELF4	Q9BZC1	486 aa	Known RBP	4.78	□□□□□ -1.64
LMO7-223	ENST00000533299	CABP5	Q9NP86	173 aa		4.78	□□□□□ -1.64
LMO7-223	ENST00000533299	PPARGC1A	Q9UBK2	798 aa	Known RBP	4.78	□□□□□ -1.64
LMO7-223	ENST00000533299	ZNF652	Q9Y2D9	606 aa		4.78	□□□□□ -1.64
LMO7-223	ENST00000533299	CCDC66	A2RUB6	948 aa		4.77	□□□□□ -1.65
LMO7-223	ENST00000533299	IRS4	O14654	1257 aa	Predicted RBP	4.77	□□□□□ -1.65
LMO7-223	ENST00000533299	DNAJC8	O75937	253 aa	Predicted RBP	4.77	□□□□□ -1.65
LMO7-223	ENST00000533299	SDHB	P21912	280 aa		4.77	□□□□□ -1.65
LMO7-223	ENST00000533299	NEK4	P51957	841 aa		4.77	□□□□□ -1.65
LMO7-223	ENST00000533299	GPR19	Q15760	415 aa		4.77	□□□□□ -1.65
LMO7-223	ENST00000533299	ARHGAP44	Q17R89	818 aa		4.77	□□□□□ -1.65
LMO7-223	ENST00000533299	TM4SF20	Q53R12	229 aa		4.77	□□□□□ -1.65
LMO7-223	ENST00000533299	EMC4	Q5J8M3	183 aa		4.77	□□□□□ -1.65
LMO7-223	ENST00000533299	ZCCHC8	Q6NZY4	707 aa	Known RBP	4.77	□□□□□ -1.65
LMO7-223	ENST00000533299	MILR1	Q7Z6M3	343 aa		4.77	□□□□□ -1.65
LMO7-223	ENST00000533299	TSPAN17	Q96FV3	270 aa		4.77	□□□□□ -1.65
LMO7-223	ENST00000533299	CDIP1	Q9H305	208 aa		4.77	□□□□□ -1.65
LMO7-223	ENST00000533299	NGRN	Q9NPE2	291 aa	Known RBP	4.77	□□□□□ -1.65
LMO7-223	ENST00000533299	SAMD15	Q9P1V8	674 aa		4.77	□□□□□ -1.65
LMO7-223	ENST00000533299	KLHL14	Q9P2G3	628 aa		4.77	□□□□□ -1.65
LMO7-223	ENST00000533299	DSE	Q9UL01	958 aa		4.77	□□□□□ -1.65
LMO7-223	ENST00000533299	TNPO3	Q9Y5L0	923 aa	Known RBP	4.77	□□□□□ -1.65
LMO7-223	ENST00000533299	JMJD7	P0C870	316 aa		4.76	□□□□□ -1.65
LMO7-223	ENST00000533299	PYGM	P11217	842 aa		4.76	□□□□□ -1.65
LMO7-223	ENST00000533299	MYCLP1	P12525	358 aa	Predicted RBP	4.76	□□□□□ -1.65
LMO7-223	ENST00000533299	SDS	P20132	328 aa		4.76	□□□□□ -1.65
LMO7-223	ENST00000533299	SRSF3	P84103	164 aa	Known RBP	4.76	□□□□□ -1.65
LMO7-223	ENST00000533299	PRR5	P85299	388 aa		4.76	□□□□□ -1.65
LMO7-223	ENST00000533299	TARBP2	Q15633	366 aa	Known RBP	4.76	□□□□□ -1.65
LMO7-223	ENST00000533299	PLEKHN1	Q494U1	663 aa	Predicted RBP	4.76	□□□□□ -1.65
LMO7-223	ENST00000533299	TMC6	Q7Z403	805 aa		4.76	□□□□□ -1.65
LMO7-223	ENST00000533299	DDX1	Q92499	740 aa	Known RBP	4.76	□□□□□ -1.65
LMO7-223	ENST00000533299	ALG3	Q92685	438 aa		4.76	□□□□□ -1.65
LMO7-223	ENST00000533299	DDX11	Q96FC9	970 aa		4.76	□□□□□ -1.65
LMO7-223	ENST00000533299	YIPF4	Q9BSR8	244 aa		4.76	□□□□□ -1.65
LMO7-223	ENST00000533299	FBLN5	Q9UBX5	448 aa		4.76	□□□□□ -1.65

Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms