RNA–Protein interactions for RNA: ENST00000531539.5

FOXR1-202, Transcript of forkhead box R1, humanhuman

TSL 1 (best)

Gene FOXR1, Length 1,053 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FOXR1-202ENST00000531539 KIF2CQ99661 725 aa16.51■□□□□ 0.23
FOXR1-202ENST00000531539 PPP1R12CQ9BZL4 782 aa16.51■□□□□ 0.23
FOXR1-202ENST00000531539 UPF2Q9HAU5 1272 aaKnown RBP16.51■□□□□ 0.23
FOXR1-202ENST00000531539 TBX21Q9UL17 535 aa16.51■□□□□ 0.23
FOXR1-202ENST00000531539 TELO2Q9Y4R8 837 aa16.51■□□□□ 0.23
FOXR1-202ENST00000531539 CYP2C9P11712 490 aa16.5■□□□□ 0.23
FOXR1-202ENST00000531539 CYP2C18P33260 490 aa16.5■□□□□ 0.23
FOXR1-202ENST00000531539 PTPN11Q06124 597 aaPredicted RBP16.5■□□□□ 0.23
FOXR1-202ENST00000531539 MFSD10Q14728 455 aa16.5■□□□□ 0.23
FOXR1-202ENST00000531539 KIAA0753Q2KHM9 967 aa16.5■□□□□ 0.23
FOXR1-202ENST00000531539 UTP14CQ5TAP6 766 aaKnown RBP16.5■□□□□ 0.23
FOXR1-202ENST00000531539 C7orf31Q8N865 590 aa16.5■□□□□ 0.23
FOXR1-202ENST00000531539 UIMC1Q96RL1 719 aa16.5■□□□□ 0.23
FOXR1-202ENST00000531539 GPR20Q99678 358 aa16.5■□□□□ 0.23
FOXR1-202ENST00000531539 KCNH7Q9NS40 1196 aa16.5■□□□□ 0.23
FOXR1-202ENST00000531539 ORC3Q9UBD5 711 aaPredicted RBP16.5■□□□□ 0.23
FOXR1-202ENST00000531539 KCNJ14Q9UNX9 436 aa16.5■□□□□ 0.23
FOXR1-202ENST00000531539 LIMCH1Q9UPQ0 1083 aa16.5■□□□□ 0.23
FOXR1-202ENST00000531539 MEIS1O00470 390 aa16.49■□□□□ 0.23
FOXR1-202ENST00000531539 CYP3A4P08684 503 aa16.49■□□□□ 0.23
FOXR1-202ENST00000531539 KCNA2P16389 499 aa16.49■□□□□ 0.23
FOXR1-202ENST00000531539 RBM25P49756 843 aaKnown RBP16.49■□□□□ 0.23
FOXR1-202ENST00000531539 PLA2G4DQ86XP0 818 aa16.49■□□□□ 0.23
FOXR1-202ENST00000531539 BLIDQ8IZY5 108 aa16.49■□□□□ 0.23
FOXR1-202ENST00000531539 GTF3C6Q969F1 213 aa16.49■□□□□ 0.23
FOXR1-202ENST00000531539 C16orf70Q9BSU1 422 aa16.49■□□□□ 0.23
FOXR1-202ENST00000531539 KATNAL1Q9BW62 490 aa16.49■□□□□ 0.23
FOXR1-202ENST00000531539 HIPK3Q9H422 1215 aa16.49■□□□□ 0.23
FOXR1-202ENST00000531539 HDAC6Q9UBN7 1215 aa16.49■□□□□ 0.23
FOXR1-202ENST00000531539 PCDHA4Q9UN74 947 aa16.49■□□□□ 0.23
FOXR1-202ENST00000531539 NOD1Q9Y239 953 aa16.49■□□□□ 0.23
FOXR1-202ENST00000531539 H3BRB1 525 aa16.48■□□□□ 0.23
FOXR1-202ENST00000531539 LGALS2P05162 132 aa16.48■□□□□ 0.23
FOXR1-202ENST00000531539 HOXD8P13378 290 aaPredicted RBP16.48■□□□□ 0.23
FOXR1-202ENST00000531539 XBP1P17861 261 aa16.48■□□□□ 0.23
FOXR1-202ENST00000531539 CCL23P55773 120 aa16.48■□□□□ 0.23
FOXR1-202ENST00000531539 FPGSQ05932 587 aa16.48■□□□□ 0.23
FOXR1-202ENST00000531539 PTGISQ16647 500 aa16.48■□□□□ 0.23
FOXR1-202ENST00000531539 MFSD5Q6N075 450 aa16.48■□□□□ 0.23
FOXR1-202ENST00000531539 TDHQ8IZJ6 230 aa16.48■□□□□ 0.23
FOXR1-202ENST00000531539 TMEM199Q8N511 208 aa16.48■□□□□ 0.23
FOXR1-202ENST00000531539 SEPT1Q8WYJ6 367 aa16.48■□□□□ 0.23
FOXR1-202ENST00000531539 WASF1Q92558 559 aa16.48■□□□□ 0.23
FOXR1-202ENST00000531539 TUT1Q9H6E5 874 aaKnown RBP16.48■□□□□ 0.23
FOXR1-202ENST00000531539 GJB4Q9NTQ9 266 aa16.48■□□□□ 0.23
FOXR1-202ENST00000531539 TRIOBPQ9H2D6 2365 aa16.48■□□□□ 0.23
FOXR1-202ENST00000531539 UMODL1Q5DID0 1318 aa16.47■□□□□ 0.23
FOXR1-202ENST00000531539 A0A1W2PPC1 479 aa16.47■□□□□ 0.23
FOXR1-202ENST00000531539 GSTTP1A0A1W2PQM5 241 aa16.47■□□□□ 0.23
FOXR1-202ENST00000531539 FAM86B1E9PN63 330 aa16.47■□□□□ 0.23
FOXR1-202ENST00000531539 HAS3O00219 553 aa16.47■□□□□ 0.23
FOXR1-202ENST00000531539 F2P00734 622 aa16.47■□□□□ 0.23
FOXR1-202ENST00000531539 FAM86B2P0C5J1 330 aa16.47■□□□□ 0.23
FOXR1-202ENST00000531539 FDPSP14324 419 aaKnown RBP16.47■□□□□ 0.23
FOXR1-202ENST00000531539 SHHQ15465 462 aa16.47■□□□□ 0.23
FOXR1-202ENST00000531539 GDF6Q6KF10 455 aaPredicted RBP16.47■□□□□ 0.23
FOXR1-202ENST00000531539 ZSCAN31Q96LW9 406 aaPredicted RBP16.47■□□□□ 0.23
FOXR1-202ENST00000531539 SDF4Q9BRK5 362 aa16.47■□□□□ 0.23
FOXR1-202ENST00000531539 NOC4LQ9BVI4 516 aaKnown RBP16.47■□□□□ 0.23
FOXR1-202ENST00000531539 AGO4Q9HCK5 861 aaKnown RBP16.47■□□□□ 0.23
FOXR1-202ENST00000531539 STK36Q9NRP7 1315 aa16.46■□□□□ 0.23
FOXR1-202ENST00000531539 CSF2RAP15509 400 aa16.46■□□□□ 0.23
FOXR1-202ENST00000531539 TCF7P36402 384 aaPredicted RBP16.46■□□□□ 0.23
FOXR1-202ENST00000531539 EPHB4P54760 987 aa16.46■□□□□ 0.23
FOXR1-202ENST00000531539 ZNF200P98182 395 aaPredicted RBP16.46■□□□□ 0.23
FOXR1-202ENST00000531539 GALNT17Q6IS24 598 aa16.46■□□□□ 0.23
FOXR1-202ENST00000531539 NIPA1Q7RTP0 329 aa16.46■□□□□ 0.23
FOXR1-202ENST00000531539 CCDC83Q8IWF9 413 aa16.46■□□□□ 0.23
FOXR1-202ENST00000531539 RETREG2Q8NC44 543 aa16.46■□□□□ 0.23
FOXR1-202ENST00000531539 NSUN7Q8NE18 718 aaKnown RBP16.46■□□□□ 0.23
FOXR1-202ENST00000531539 CRYGNQ8WXF5 182 aa16.46■□□□□ 0.23
FOXR1-202ENST00000531539 PHF20Q9BVI0 1012 aa16.46■□□□□ 0.23
FOXR1-202ENST00000531539 SLC9A2Q9UBY0 812 aa16.46■□□□□ 0.23
FOXR1-202ENST00000531539 DDX39AO00148 427 aaKnown RBP16.45■□□□□ 0.22
FOXR1-202ENST00000531539 JAK2O60674 1132 aa16.45■□□□□ 0.22
FOXR1-202ENST00000531539 ACRP10323 421 aa16.45■□□□□ 0.22
FOXR1-202ENST00000531539 USP11P51784 963 aa16.45■□□□□ 0.22
FOXR1-202ENST00000531539 FOSBP53539 338 aa16.45■□□□□ 0.22
FOXR1-202ENST00000531539 ITGB3BPQ13352 177 aaPredicted RBP16.45■□□□□ 0.22
FOXR1-202ENST00000531539 PPIGQ13427 754 aaKnown RBP eCLIP16.45■□□□□ 0.22
FOXR1-202ENST00000531539 RABEP1Q15276 862 aa16.45■□□□□ 0.22
FOXR1-202ENST00000531539 PRR16Q569H4 304 aa16.45■□□□□ 0.22
FOXR1-202ENST00000531539 C9orf50Q5SZB4 431 aa16.45■□□□□ 0.22
FOXR1-202ENST00000531539 SESTD1Q86VW0 696 aa16.45■□□□□ 0.22
FOXR1-202ENST00000531539 TRIM50Q86XT4 487 aa16.45■□□□□ 0.22
FOXR1-202ENST00000531539 FAM177A1Q8N128 213 aaPredicted RBP16.45■□□□□ 0.22
FOXR1-202ENST00000531539 DAGLBQ8NCG7 672 aa16.45■□□□□ 0.22
FOXR1-202ENST00000531539 TBCKQ8TEA7 893 aa16.45■□□□□ 0.22
FOXR1-202ENST00000531539 GLG1Q92896 1179 aa16.45■□□□□ 0.22
FOXR1-202ENST00000531539 ZNF577Q9BSK1 485 aa16.45■□□□□ 0.22
FOXR1-202ENST00000531539 JPH1Q9HDC5 661 aaPredicted RBP16.45■□□□□ 0.22
FOXR1-202ENST00000531539 GTF2IRD1Q9UHL9 959 aa16.45■□□□□ 0.22
FOXR1-202ENST00000531539 IGLV3-22A0A075B6J6 115 aa16.44■□□□□ 0.22
FOXR1-202ENST00000531539 EDIL3O43854 480 aa16.44■□□□□ 0.22
FOXR1-202ENST00000531539 CIITAP33076 1130 aa16.44■□□□□ 0.22
FOXR1-202ENST00000531539 FXR1P51114 621 aaKnown RBP eCLIP16.44■□□□□ 0.22
FOXR1-202ENST00000531539 NONOQ15233 471 aaKnown RBP eCLIP16.44■□□□□ 0.22
FOXR1-202ENST00000531539 NPY5RQ15761 445 aa16.44■□□□□ 0.22
FOXR1-202ENST00000531539 C16orf59Q7L2K0 433 aa16.44■□□□□ 0.22
FOXR1-202ENST00000531539 SCLYQ96I15 445 aa16.44■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms