RNA–Protein interactions for RNA: ENST00000527889.5

CD44-226, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-226ENST00000527889 CPA1P15085 419 aa4.9□□□□□ -1.63
CD44-226ENST00000527889 NME2P22392 152 aa4.9□□□□□ -1.63
CD44-226ENST00000527889 HOXA10P31260 410 aaPredicted RBP4.9□□□□□ -1.63
CD44-226ENST00000527889 HIBADHP31937 336 aaKnown RBP4.9□□□□□ -1.63
CD44-226ENST00000527889 ADD2P35612 726 aa4.9□□□□□ -1.63
CD44-226ENST00000527889 PDE6BP35913 854 aa4.9□□□□□ -1.63
CD44-226ENST00000527889 NEK4P51957 841 aa4.9□□□□□ -1.63
CD44-226ENST00000527889 GPLD1P80108 840 aa4.9□□□□□ -1.63
CD44-226ENST00000527889 COL9A3Q14050 684 aaPredicted RBP4.9□□□□□ -1.63
CD44-226ENST00000527889 TTF1Q15361 905 aaPredicted RBP4.9□□□□□ -1.63
CD44-226ENST00000527889 CAVIN4Q5BKX8 364 aa4.9□□□□□ -1.63
CD44-226ENST00000527889 SLC9C2Q5TAH2 1124 aa4.9□□□□□ -1.63
CD44-226ENST00000527889 CCDC181Q5TID7 509 aa4.9□□□□□ -1.63
CD44-226ENST00000527889 CREB3L3Q68CJ9 461 aa4.9□□□□□ -1.63
CD44-226ENST00000527889 RAB44Q7Z6P3 723 aaPredicted RBP4.9□□□□□ -1.63
CD44-226ENST00000527889 STK35Q8TDR2 534 aa4.9□□□□□ -1.63
CD44-226ENST00000527889 THAP3Q8WTV1 239 aaPredicted RBP4.9□□□□□ -1.63
CD44-226ENST00000527889 MAP4K1Q92918 833 aa4.9□□□□□ -1.63
CD44-226ENST00000527889 SNX21Q969T3 373 aa4.9□□□□□ -1.63
CD44-226ENST00000527889 MASTLQ96GX5 879 aa4.9□□□□□ -1.63
CD44-226ENST00000527889 POP1Q99575 1024 aaKnown RBP4.9□□□□□ -1.63
CD44-226ENST00000527889 UPF3BQ9BZI7 483 aaKnown RBP4.9□□□□□ -1.63
CD44-226ENST00000527889 DDX24Q9GZR7 859 aaKnown RBP eCLIP4.9□□□□□ -1.63
CD44-226ENST00000527889 PUS7LQ9H0K6 701 aaKnown RBP4.9□□□□□ -1.63
CD44-226ENST00000527889 CLEC4MQ9H2X3 399 aaPredicted RBP4.9□□□□□ -1.63
CD44-226ENST00000527889 EHMT1Q9H9B1 1298 aa4.9□□□□□ -1.63
CD44-226ENST00000527889 GNL3LQ9NVN8 582 aaKnown RBP4.9□□□□□ -1.63
CD44-226ENST00000527889 STK17AQ9UEE5 414 aa4.9□□□□□ -1.63
CD44-226ENST00000527889 ABCF2Q9UG63 623 aa4.9□□□□□ -1.63
CD44-226ENST00000527889 POLLQ9UGP5 575 aa4.9□□□□□ -1.63
CD44-226ENST00000527889 GGA1Q9UJY5 639 aa4.9□□□□□ -1.63
CD44-226ENST00000527889 PPME1Q9Y570 386 aa4.9□□□□□ -1.63
CD44-226ENST00000527889 PKD1L2Q7Z442 2459 aa4.9□□□□□ -1.63
CD44-226ENST00000527889 TCRBV5S4A2TA0A5A2 114 aa4.89□□□□□ -1.63
CD44-226ENST00000527889 B2RBV5 119 aa4.89□□□□□ -1.63
CD44-226ENST00000527889 H0YIN7 160 aa4.89□□□□□ -1.63
CD44-226ENST00000527889 FOXP2O15409 715 aa4.89□□□□□ -1.63
CD44-226ENST00000527889 TPD52L2O43399 206 aaKnown RBP4.89□□□□□ -1.63
CD44-226ENST00000527889 EPB41L2O43491 1005 aaKnown RBP4.89□□□□□ -1.63
CD44-226ENST00000527889 BBOX1O75936 387 aa4.89□□□□□ -1.63
CD44-226ENST00000527889 BPNT1O95861 308 aa4.89□□□□□ -1.63
CD44-226ENST00000527889 B3GALT4O96024 378 aa4.89□□□□□ -1.63
CD44-226ENST00000527889 VIL1P09327 827 aaKnown RBP4.89□□□□□ -1.63
CD44-226ENST00000527889 HSPD1P10809 573 aaKnown RBP4.89□□□□□ -1.63
CD44-226ENST00000527889 CASTP20810 708 aaKnown RBP4.89□□□□□ -1.63
CD44-226ENST00000527889 MAP2K3P46734 347 aa4.89□□□□□ -1.63
CD44-226ENST00000527889 HAND2P61296 217 aa4.89□□□□□ -1.63
CD44-226ENST00000527889 PCDH1Q08174 1060 aa4.89□□□□□ -1.63
CD44-226ENST00000527889 MAP3K12Q12852 859 aa4.89□□□□□ -1.63
CD44-226ENST00000527889 NECTIN1Q15223 517 aa4.89□□□□□ -1.63
CD44-226ENST00000527889 ZNF423Q2M1K9 1284 aa4.89□□□□□ -1.63
CD44-226ENST00000527889 LRRFIP1Q32MZ4 808 aaKnown RBP4.89□□□□□ -1.63
CD44-226ENST00000527889 ADCK5Q3MIX3 580 aa4.89□□□□□ -1.63
CD44-226ENST00000527889 MTERF2Q49AM1 385 aa4.89□□□□□ -1.63
CD44-226ENST00000527889 SPTY2D1Q68D10 685 aaPredicted RBP4.89□□□□□ -1.63
CD44-226ENST00000527889 TTLL5Q6EMB2 1281 aa4.89□□□□□ -1.63
CD44-226ENST00000527889 ZSCAN25Q6NSZ9 544 aa4.89□□□□□ -1.63
CD44-226ENST00000527889 LLGL2Q6P1M3 1020 aa4.89□□□□□ -1.63
CD44-226ENST00000527889 RUFY4Q6ZNE9 571 aa4.89□□□□□ -1.63
CD44-226ENST00000527889 SPATC1Q76KD6 591 aa4.89□□□□□ -1.63
CD44-226ENST00000527889 ZNF804AQ7Z570 1209 aa4.89□□□□□ -1.63
CD44-226ENST00000527889 ADGRA1Q86SQ6 560 aa4.89□□□□□ -1.63
CD44-226ENST00000527889 SP8Q8IXZ3 490 aa4.89□□□□□ -1.63
CD44-226ENST00000527889 SVOPQ8N4V2 548 aa4.89□□□□□ -1.63
CD44-226ENST00000527889 C19orf47Q8N9M1 422 aaKnown RBP4.89□□□□□ -1.63
CD44-226ENST00000527889 TBC1D16Q8TBP0 767 aa4.89□□□□□ -1.63
CD44-226ENST00000527889 GRIN3AQ8TCU5 1115 aa4.89□□□□□ -1.63
CD44-226ENST00000527889 TCEANC2Q96MN5 208 aa4.89□□□□□ -1.63
CD44-226ENST00000527889 JAKMIP1Q96N16 626 aaKnown RBP4.89□□□□□ -1.63
CD44-226ENST00000527889 RAI14Q9P0K7 980 aa4.89□□□□□ -1.63
CD44-226ENST00000527889 LRP2BPQ9P2M1 347 aa4.89□□□□□ -1.63
CD44-226ENST00000527889 DENND2AQ9ULE3 1009 aa4.89□□□□□ -1.63
CD44-226ENST00000527889 POLR3KQ9Y2Y1 108 aaPredicted RBP4.89□□□□□ -1.63
CD44-226ENST00000527889 SUGT1Q9Y2Z0 365 aa4.89□□□□□ -1.63
CD44-226ENST00000527889 ATP6V0A2Q9Y487 856 aa4.89□□□□□ -1.63
CD44-226ENST00000527889 PTCH2Q9Y6C5 1203 aa4.89□□□□□ -1.63
CD44-226ENST00000527889 PTPRFP10586 1907 aa4.89□□□□□ -1.63
CD44-226ENST00000527889 COL4A5P29400 1685 aa4.89□□□□□ -1.63
CD44-226ENST00000527889 RPAP1Q9BWH6 1393 aaPredicted RBP4.89□□□□□ -1.63
CD44-226ENST00000527889 COL11A1P12107 1806 aaPredicted RBP4.88□□□□□ -1.63
CD44-226ENST00000527889 PARP14Q460N5 1801 aa4.88□□□□□ -1.63
CD44-226ENST00000527889 KIAA1217Q5T5P2 1943 aa4.88□□□□□ -1.63
CD44-226ENST00000527889 UNC79Q9P2D8 2635 aa4.88□□□□□ -1.63
CD44-226ENST00000527889 ZNFX1Q9P2E3 1918 aaKnown RBP4.88□□□□□ -1.63
CD44-226ENST00000527889 A0A1W2PQH9 124 aa4.88□□□□□ -1.63
CD44-226ENST00000527889 SHISA8B8ZZ34 492 aa4.88□□□□□ -1.63
CD44-226ENST00000527889 MBD4O95243 580 aa4.88□□□□□ -1.63
CD44-226ENST00000527889 ATE1O95260 518 aa4.88□□□□□ -1.63
CD44-226ENST00000527889 CYP21A2P08686 494 aa4.88□□□□□ -1.63
CD44-226ENST00000527889 CYP7A1P22680 504 aa4.88□□□□□ -1.63
CD44-226ENST00000527889 ARNTP27540 789 aa4.88□□□□□ -1.63
CD44-226ENST00000527889 PRDX5P30044 214 aa4.88□□□□□ -1.63
CD44-226ENST00000527889 ALDH1B1P30837 517 aa4.88□□□□□ -1.63
CD44-226ENST00000527889 DEKP35659 375 aaKnown RBP4.88□□□□□ -1.63
CD44-226ENST00000527889 PLA2G5P39877 138 aa4.88□□□□□ -1.63
CD44-226ENST00000527889 SOX10P56693 466 aa4.88□□□□□ -1.63
CD44-226ENST00000527889 DYNLL1P63167 89 aaKnown RBP4.88□□□□□ -1.63
CD44-226ENST00000527889 RPL6Q02878 288 aaKnown RBP4.88□□□□□ -1.63
CD44-226ENST00000527889 PTPN11Q06124 597 aaPredicted RBP4.88□□□□□ -1.63
CD44-226ENST00000527889 ZNF252P-AS1Q0IIN9 211 aa4.88□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms