RNA–Protein interactions for RNA: ENST00000524023.1

HDAC9-228, Transcript of histone deacetylase 9, humanhuman

TSL 2 BASIC

Gene HDAC9, Length 2,199 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-228ENST00000524023 GNA14O95837 355 aa12.23□□□□□ -0.45
HDAC9-228ENST00000524023 PLA2G4BP0C869 781 aa12.23□□□□□ -0.45
HDAC9-228ENST00000524023 CXCR5P32302 372 aa12.23□□□□□ -0.45
HDAC9-228ENST00000524023 GGCXP38435 758 aa12.23□□□□□ -0.45
HDAC9-228ENST00000524023 SLC1A4P43007 532 aa12.23□□□□□ -0.45
HDAC9-228ENST00000524023 DDR1Q08345 913 aa12.23□□□□□ -0.45
HDAC9-228ENST00000524023 SLC9C1Q4G0N8 1177 aa12.23□□□□□ -0.45
HDAC9-228ENST00000524023 TDRD12Q587J7 1177 aaKnown RBP12.23□□□□□ -0.45
HDAC9-228ENST00000524023 TRIM59Q8IWR1 403 aa12.23□□□□□ -0.45
HDAC9-228ENST00000524023 CCDC65Q8IXS2 484 aa12.23□□□□□ -0.45
HDAC9-228ENST00000524023 SP8Q8IXZ3 490 aa12.23□□□□□ -0.45
HDAC9-228ENST00000524023 RNF10Q8N5U6 811 aaKnown RBP12.23□□□□□ -0.45
HDAC9-228ENST00000524023 HDAC7Q8WUI4 952 aa12.23□□□□□ -0.45
HDAC9-228ENST00000524023 TRERF1Q96PN7 1200 aa12.23□□□□□ -0.45
HDAC9-228ENST00000524023 DMGDHQ9UI17 866 aaKnown RBP12.23□□□□□ -0.45
HDAC9-228ENST00000524023 NPHP3-ACAD11A0A0J9YXS1 232 aa12.23□□□□□ -0.45
HDAC9-228ENST00000524023 POTEB3A0JP26 581 aa12.23□□□□□ -0.45
HDAC9-228ENST00000524023 POTECB2RU33 542 aa12.23□□□□□ -0.45
HDAC9-228ENST00000524023 USP17L15C9J2P7 530 aa12.23□□□□□ -0.45
HDAC9-228ENST00000524023 USP17L13C9JLJ4 530 aa12.23□□□□□ -0.45
HDAC9-228ENST00000524023 USP17L11C9JVI0 530 aa12.23□□□□□ -0.45
HDAC9-228ENST00000524023 USP17L18D6R9N7 530 aa12.23□□□□□ -0.45
HDAC9-228ENST00000524023 USP17L22D6RA61 530 aa12.23□□□□□ -0.45
HDAC9-228ENST00000524023 USP17L17D6RBQ6 530 aa12.23□□□□□ -0.45
HDAC9-228ENST00000524023 USP17L19D6RCP7 530 aa12.23□□□□□ -0.45
HDAC9-228ENST00000524023 USP17L20D6RJB6 530 aa12.23□□□□□ -0.45
HDAC9-228ENST00000524023 AGPSO00116 658 aa12.23□□□□□ -0.45
HDAC9-228ENST00000524023 MPHOSPH10O00566 681 aaKnown RBP12.23□□□□□ -0.45
HDAC9-228ENST00000524023 PPEF1O14829 653 aaPredicted RBP12.23□□□□□ -0.45
HDAC9-228ENST00000524023 NCK2O43639 380 aa12.23□□□□□ -0.45
HDAC9-228ENST00000524023 SERPING1P05155 500 aa12.23□□□□□ -0.45
HDAC9-228ENST00000524023 MARSP56192 900 aaKnown RBP12.23□□□□□ -0.45
HDAC9-228ENST00000524023 IRX5P78411 483 aaPredicted RBP12.23□□□□□ -0.45
HDAC9-228ENST00000524023 USP17L24Q0WX57 530 aa12.23□□□□□ -0.45
HDAC9-228ENST00000524023 KLHDC7AQ5VTJ3 777 aa12.23□□□□□ -0.45
HDAC9-228ENST00000524023 SFMBT2Q5VUG0 894 aa12.23□□□□□ -0.45
HDAC9-228ENST00000524023 USP17L6PQ6QN14 398 aa12.23□□□□□ -0.45
HDAC9-228ENST00000524023 POTEBQ6S5H4 581 aa12.23□□□□□ -0.45
HDAC9-228ENST00000524023 TMC4Q7Z404 712 aa12.23□□□□□ -0.45
HDAC9-228ENST00000524023 NELFCDQ8IXH7 590 aa12.23□□□□□ -0.45
HDAC9-228ENST00000524023 GOLGA6L1Q8N7Z2 621 aa12.23□□□□□ -0.45
HDAC9-228ENST00000524023 AFAP1L1Q8TED9 768 aa12.23□□□□□ -0.45
HDAC9-228ENST00000524023 RIN2Q8WYP3 895 aaPredicted RBP12.23□□□□□ -0.45
HDAC9-228ENST00000524023 NOX5Q96PH1 765 aa12.23□□□□□ -0.45
HDAC9-228ENST00000524023 UIMC1Q96RL1 719 aa12.23□□□□□ -0.45
HDAC9-228ENST00000524023 PSMB7Q99436 277 aa12.23□□□□□ -0.45
HDAC9-228ENST00000524023 HINFPQ9BQA5 517 aa12.23□□□□□ -0.45
HDAC9-228ENST00000524023 LSM14BQ9BX40 385 aaKnown RBP12.23□□□□□ -0.45
HDAC9-228ENST00000524023 TLR10Q9BXR5 811 aa12.23□□□□□ -0.45
HDAC9-228ENST00000524023 KCNMB3Q9NPA1 279 aa12.23□□□□□ -0.45
HDAC9-228ENST00000524023 EHD2Q9NZN4 543 aa12.23□□□□□ -0.45
HDAC9-228ENST00000524023 ADAMTSL1Q8N6G6 1762 aa12.23□□□□□ -0.45
HDAC9-228ENST00000524023 BUB1O43683 1085 aa12.22□□□□□ -0.45
HDAC9-228ENST00000524023 IVLP07476 585 aa12.22□□□□□ -0.45
HDAC9-228ENST00000524023 CYP11B2P19099 503 aa12.22□□□□□ -0.45
HDAC9-228ENST00000524023 USP11P51784 963 aa12.22□□□□□ -0.45
HDAC9-228ENST00000524023 POLR2FP61218 127 aaKnown RBP12.22□□□□□ -0.45
HDAC9-228ENST00000524023 HERC4Q5GLZ8 1057 aaPredicted RBP12.22□□□□□ -0.45
HDAC9-228ENST00000524023 CCDC181Q5TID7 509 aa12.22□□□□□ -0.45
HDAC9-228ENST00000524023 CDC42EP5Q6NZY7 148 aa12.22□□□□□ -0.45
HDAC9-228ENST00000524023 GPBP1Q86WP2 473 aa12.22□□□□□ -0.45
HDAC9-228ENST00000524023 SCFD1Q8WVM8 642 aa12.22□□□□□ -0.45
HDAC9-228ENST00000524023 MXD3Q9BW11 206 aa12.22□□□□□ -0.45
HDAC9-228ENST00000524023 GLT8D2Q9H1C3 349 aa12.22□□□□□ -0.45
HDAC9-228ENST00000524023 KCTD10Q9H3F6 313 aa12.22□□□□□ -0.45
HDAC9-228ENST00000524023 EMILIN3Q9NT22 766 aa12.22□□□□□ -0.45
HDAC9-228ENST00000524023 SMARCAL1Q9NZC9 954 aa12.22□□□□□ -0.45
HDAC9-228ENST00000524023 UTP18Q9Y5J1 556 aaKnown RBP eCLIP12.22□□□□□ -0.45
HDAC9-228ENST00000524023 CYP3A7-CYP3A51PA0A087WV96 503 aa12.22□□□□□ -0.45
HDAC9-228ENST00000524023 POLRMTO00411 1230 aaKnown RBP12.22□□□□□ -0.45
HDAC9-228ENST00000524023 SLC26A4O43511 780 aa12.22□□□□□ -0.45
HDAC9-228ENST00000524023 HLA-DOAP06340 250 aa12.22□□□□□ -0.45
HDAC9-228ENST00000524023 SLURP2P0DP57 97 aa12.22□□□□□ -0.45
HDAC9-228ENST00000524023 CYP3A7P24462 503 aa12.22□□□□□ -0.45
HDAC9-228ENST00000524023 PAFAH1B1P43034 410 aa12.22□□□□□ -0.45
HDAC9-228ENST00000524023 MATR3P43243 847 aaKnown RBP eCLIP12.22□□□□□ -0.45
HDAC9-228ENST00000524023 SCNN1DP51172 638 aa12.22□□□□□ -0.45
HDAC9-228ENST00000524023 CACNB1Q02641 598 aaPredicted RBP12.22□□□□□ -0.45
HDAC9-228ENST00000524023 QRICH1Q2TAL8 776 aa12.22□□□□□ -0.45
HDAC9-228ENST00000524023 ZC3H3Q8IXZ2 948 aaKnown RBP12.22□□□□□ -0.45
HDAC9-228ENST00000524023 TSKSQ9UJT2 592 aa12.22□□□□□ -0.45
HDAC9-228ENST00000524023 ATP6V0A2Q9Y487 856 aa12.22□□□□□ -0.45
HDAC9-228ENST00000524023 EP400Q96L91 3159 aa12.21□□□□□ -0.45
HDAC9-228ENST00000524023 FRMD3A2A2Y4 597 aa12.21□□□□□ -0.45
HDAC9-228ENST00000524023 GOLGA6BA6NDN3 693 aa12.21□□□□□ -0.45
HDAC9-228ENST00000524023 MED24O75448 989 aa12.21□□□□□ -0.45
HDAC9-228ENST00000524023 SLC7A5Q01650 507 aa12.21□□□□□ -0.45
HDAC9-228ENST00000524023 APBA1Q02410 837 aa12.21□□□□□ -0.45
HDAC9-228ENST00000524023 ARSHQ5FYA8 562 aa12.21□□□□□ -0.45
HDAC9-228ENST00000524023 HAUS3Q68CZ6 603 aa12.21□□□□□ -0.45
HDAC9-228ENST00000524023 MBOAT7Q96N66 472 aa12.21□□□□□ -0.45
HDAC9-228ENST00000524023 ANO3Q9BYT9 981 aa12.21□□□□□ -0.45
HDAC9-228ENST00000524023 KANSL2Q9H9L4 492 aa12.21□□□□□ -0.45
HDAC9-228ENST00000524023 STIM2Q9P246 746 aa12.21□□□□□ -0.45
HDAC9-228ENST00000524023 PCDHA1Q9Y5I3 950 aa12.21□□□□□ -0.45
HDAC9-228ENST00000524023 STAT3P40763 770 aa12.2□□□□□ -0.46
HDAC9-228ENST00000524023 SLC12A3P55017 1021 aa12.2□□□□□ -0.46
HDAC9-228ENST00000524023 NAP1L1P55209 391 aaKnown RBP12.2□□□□□ -0.46
HDAC9-228ENST00000524023 MRPS25P82663 173 aaKnown RBP12.2□□□□□ -0.46
HDAC9-228ENST00000524023 NFIAQ12857 509 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms