RNA–Protein interactions for RNA: ENST00000522515.5

LSM1-204, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 1,568 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-204ENST00000522515 LRCH2Q5VUJ6 765 aa18.38■□□□□ 0.53
LSM1-204ENST00000522515 FBXO46Q6PJ61 603 aaPredicted RBP18.38■□□□□ 0.53
LSM1-204ENST00000522515 SLFN12Q8IYM2 578 aa18.38■□□□□ 0.53
LSM1-204ENST00000522515 COPS5Q92905 334 aa18.38■□□□□ 0.53
LSM1-204ENST00000522515 SPATA32Q96LK8 384 aa18.38■□□□□ 0.53
LSM1-204ENST00000522515 DOCK5Q9H7D0 1870 aa18.38■□□□□ 0.53
LSM1-204ENST00000522515 DDX39AO00148 427 aaKnown RBP18.38■□□□□ 0.53
LSM1-204ENST00000522515 CNGA1P29973 690 aa18.38■□□□□ 0.53
LSM1-204ENST00000522515 TNFAIP2Q03169 654 aa18.38■□□□□ 0.53
LSM1-204ENST00000522515 SLC9C1Q4G0N8 1177 aa18.38■□□□□ 0.53
LSM1-204ENST00000522515 DUSP28Q4G0W2 176 aa18.38■□□□□ 0.53
LSM1-204ENST00000522515 ARL6IP4Q66PJ3 421 aaKnown RBP18.38■□□□□ 0.53
LSM1-204ENST00000522515 RIT2Q99578 217 aa18.38■□□□□ 0.53
LSM1-204ENST00000522515 SCAND2PQ9GZW5 306 aaPredicted RBP18.38■□□□□ 0.53
LSM1-204ENST00000522515 TTC12Q9H892 705 aaPredicted RBP18.38■□□□□ 0.53
LSM1-204ENST00000522515 TBC1D22BQ9NU19 505 aa18.38■□□□□ 0.53
LSM1-204ENST00000522515 FAM184BQ9ULE4 1060 aa18.38■□□□□ 0.53
LSM1-204ENST00000522515 PCDHA12Q9UN75 941 aa18.38■□□□□ 0.53
LSM1-204ENST00000522515 MORC2Q9Y6X9 1032 aaPredicted RBP18.38■□□□□ 0.53
LSM1-204ENST00000522515 NFASCO94856 1347 aa18.37■□□□□ 0.53
LSM1-204ENST00000522515 GAS7O60861 476 aa18.37■□□□□ 0.53
LSM1-204ENST00000522515 GGPS1O95749 300 aa18.37■□□□□ 0.53
LSM1-204ENST00000522515 GRIN1Q05586 938 aa18.37■□□□□ 0.53
LSM1-204ENST00000522515 NEDD9Q14511 834 aa18.37■□□□□ 0.53
LSM1-204ENST00000522515 PKN2Q16513 984 aaKnown RBP18.37■□□□□ 0.53
LSM1-204ENST00000522515 DTHD1Q6ZMT9 781 aa18.37■□□□□ 0.53
LSM1-204ENST00000522515 CLEC17AQ6ZS10 378 aa18.37■□□□□ 0.53
LSM1-204ENST00000522515 CYFIP1Q7L576 1253 aa18.37■□□□□ 0.53
LSM1-204ENST00000522515 LENG1Q96BZ8 264 aaPredicted RBP18.37■□□□□ 0.53
LSM1-204ENST00000522515 FBXO2Q9UK22 296 aaPredicted RBP18.37■□□□□ 0.53
LSM1-204ENST00000522515 VAV3Q9UKW4 847 aa18.37■□□□□ 0.53
LSM1-204ENST00000522515 VWA3AA6NCI4 1184 aa18.36■□□□□ 0.53
LSM1-204ENST00000522515 SEPT4O43236 478 aa18.36■□□□□ 0.53
LSM1-204ENST00000522515 PPP6R2O75170 966 aa18.36■□□□□ 0.53
LSM1-204ENST00000522515 AKR1A1P14550 325 aa18.36■□□□□ 0.53
LSM1-204ENST00000522515 TECP42680 631 aa18.36■□□□□ 0.53
LSM1-204ENST00000522515 CELF3Q5SZQ8 465 aaKnown RBP18.36■□□□□ 0.53
LSM1-204ENST00000522515 GIMAP8Q8ND71 665 aaPredicted RBP18.36■□□□□ 0.53
LSM1-204ENST00000522515 KCNG4Q8TDN1 519 aa18.36■□□□□ 0.53
LSM1-204ENST00000522515 SDF4Q9BRK5 362 aa18.36■□□□□ 0.53
LSM1-204ENST00000522515 TEKT3Q9BXF9 490 aa18.36■□□□□ 0.53
LSM1-204ENST00000522515 GNEQ9Y223 722 aaKnown RBP18.36■□□□□ 0.53
LSM1-204ENST00000522515 TELO2Q9Y4R8 837 aa18.36■□□□□ 0.53
LSM1-204ENST00000522515 SRPRBQ9Y5M8 271 aaKnown RBP18.36■□□□□ 0.53
LSM1-204ENST00000522515 POTEFA5A3E0 1075 aa18.35■□□□□ 0.53
LSM1-204ENST00000522515 FARP2O94887 1054 aaPredicted RBP18.35■□□□□ 0.53
LSM1-204ENST00000522515 ARHGAP1Q07960 439 aa18.35■□□□□ 0.53
LSM1-204ENST00000522515 SPIRE1Q08AE8 756 aa18.35■□□□□ 0.53
LSM1-204ENST00000522515 B3GNT9Q6UX72 402 aa18.35■□□□□ 0.53
LSM1-204ENST00000522515 DHX37Q8IY37 1157 aaKnown RBP18.35■□□□□ 0.53
LSM1-204ENST00000522515 FERMT2Q96AC1 680 aa18.35■□□□□ 0.53
LSM1-204ENST00000522515 CLIC6Q96NY7 704 aa18.35■□□□□ 0.53
LSM1-204ENST00000522515 UNC45AQ9H3U1 944 aa18.35■□□□□ 0.53
LSM1-204ENST00000522515 NKRFO15226 690 aaKnown RBP eCLIP18.34■□□□□ 0.53
LSM1-204ENST00000522515 CHMP2AO43633 222 aa18.34■□□□□ 0.53
LSM1-204ENST00000522515 CCNE2O96020 404 aa18.34■□□□□ 0.53
LSM1-204ENST00000522515 GH1P01241 217 aa18.34■□□□□ 0.53
LSM1-204ENST00000522515 ME1P48163 572 aa18.34■□□□□ 0.53
LSM1-204ENST00000522515 FXR2P51116 673 aaKnown RBP eCLIP18.34■□□□□ 0.53
LSM1-204ENST00000522515 SP4Q02446 784 aa18.34■□□□□ 0.53
LSM1-204ENST00000522515 METTL7BQ6UX53 244 aa18.34■□□□□ 0.53
LSM1-204ENST00000522515 KRI1Q8N9T8 703 aaKnown RBP18.34■□□□□ 0.53
LSM1-204ENST00000522515 MLXIPQ9HAP2 919 aa18.34■□□□□ 0.53
LSM1-204ENST00000522515 JPH1Q9HDC5 661 aaPredicted RBP18.34■□□□□ 0.53
LSM1-204ENST00000522515 HMX1Q9NP08 348 aaPredicted RBP18.34■□□□□ 0.53
LSM1-204ENST00000522515 SLC9A2Q9UBY0 812 aa18.34■□□□□ 0.53
LSM1-204ENST00000522515 PCDHA7Q9UN72 937 aa18.34■□□□□ 0.53
LSM1-204ENST00000522515 POTEMA6NI47 508 aa18.34■□□□□ 0.53
LSM1-204ENST00000522515 PPP2R5CQ13362 524 aa18.34■□□□□ 0.53
LSM1-204ENST00000522515 TMEM266Q2M3C6 531 aa18.34■□□□□ 0.53
LSM1-204ENST00000522515 IGSF22Q8N9C0 903 aa18.34■□□□□ 0.53
LSM1-204ENST00000522515 EML1O00423 815 aa18.33■□□□□ 0.52
LSM1-204ENST00000522515 DYNC1LI2O43237 492 aaPredicted RBP18.33■□□□□ 0.52
LSM1-204ENST00000522515 DUSP11O75319 330 aaKnown RBP18.33■□□□□ 0.52
LSM1-204ENST00000522515 MYCP01106 439 aaPredicted RBP18.33■□□□□ 0.52
LSM1-204ENST00000522515 KRT76Q01546 638 aa18.33■□□□□ 0.52
LSM1-204ENST00000522515 LAMC2Q13753 1193 aa18.33■□□□□ 0.52
LSM1-204ENST00000522515 MTFR1Q15390 333 aa18.33■□□□□ 0.52
LSM1-204ENST00000522515 HSDL1Q3SXM5 330 aa18.33■□□□□ 0.52
LSM1-204ENST00000522515 AXDND1Q5T1B0 1012 aaPredicted RBP18.33■□□□□ 0.52
LSM1-204ENST00000522515 NCAPH2Q6IBW4 605 aa18.33■□□□□ 0.52
LSM1-204ENST00000522515 GBP4Q96PP9 640 aa18.33■□□□□ 0.52
LSM1-204ENST00000522515 CSRNP2Q9H175 543 aa18.33■□□□□ 0.52
LSM1-204ENST00000522515 UNC93B1Q9H1C4 597 aa18.33■□□□□ 0.52
LSM1-204ENST00000522515 ELP1O95163 1332 aa18.32■□□□□ 0.52
LSM1-204ENST00000522515 PP2D1A8MPX8 630 aa18.32■□□□□ 0.52
LSM1-204ENST00000522515 ACTR2P61160 394 aa18.32■□□□□ 0.52
LSM1-204ENST00000522515 IRX5P78411 483 aaPredicted RBP18.32■□□□□ 0.52
LSM1-204ENST00000522515 PDIA5Q14554 519 aa18.32■□□□□ 0.52
LSM1-204ENST00000522515 SPECC1Q5M775 1068 aa18.32■□□□□ 0.52
LSM1-204ENST00000522515 ZNF746Q6NUN9 644 aaPredicted RBP18.32■□□□□ 0.52
LSM1-204ENST00000522515 TLK2Q86UE8 772 aa18.32■□□□□ 0.52
LSM1-204ENST00000522515 OR6J1Q8NGC5 347 aa18.32■□□□□ 0.52
LSM1-204ENST00000522515 EMID1Q96A84 441 aaPredicted RBP18.32■□□□□ 0.52
LSM1-204ENST00000522515 SPATA33Q96N06 139 aa18.32■□□□□ 0.52
LSM1-204ENST00000522515 LRWD1Q9UFC0 647 aa18.32■□□□□ 0.52
LSM1-204ENST00000522515 DDX20Q9UHI6 824 aaKnown RBP18.32■□□□□ 0.52
LSM1-204ENST00000522515 CUTAO60888 179 aa18.31■□□□□ 0.52
LSM1-204ENST00000522515 RARBP10826 455 aa18.31■□□□□ 0.52
LSM1-204ENST00000522515 CDC25AP30304 524 aa18.31■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms