RNA–Protein interactions for RNA: ENST00000513960.5

VCAN-210, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 3,973 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-210ENST00000513960 LAD1O00515 517 aa10.6□□□□□ -0.71
VCAN-210ENST00000513960 KCNK3O14649 394 aa10.6□□□□□ -0.71
VCAN-210ENST00000513960 GNA11P29992 359 aa10.6□□□□□ -0.71
VCAN-210ENST00000513960 PSEN1P49768 467 aa10.6□□□□□ -0.71
VCAN-210ENST00000513960 GRIK5Q16478 980 aa10.6□□□□□ -0.71
VCAN-210ENST00000513960 LETM2Q2VYF4 491 aa10.6□□□□□ -0.71
VCAN-210ENST00000513960 TUBB8Q3ZCM7 444 aa10.6□□□□□ -0.71
VCAN-210ENST00000513960 CREG2Q8IUH2 290 aa10.6□□□□□ -0.71
VCAN-210ENST00000513960 MICAL1Q8TDZ2 1067 aa10.6□□□□□ -0.71
VCAN-210ENST00000513960 THOC1Q96FV9 657 aaKnown RBP10.6□□□□□ -0.71
VCAN-210ENST00000513960 MTRQ99707 1265 aa10.6□□□□□ -0.71
VCAN-210ENST00000513960 LUC7LQ9NQ29 371 aaKnown RBP10.6□□□□□ -0.71
VCAN-210ENST00000513960 KIF1CO43896 1103 aaKnown RBP10.6□□□□□ -0.71
VCAN-210ENST00000513960 RASA1P20936 1047 aa10.6□□□□□ -0.71
VCAN-210ENST00000513960 CALRP27797 417 aaKnown RBP10.6□□□□□ -0.71
VCAN-210ENST00000513960 CDK8P49336 464 aa10.6□□□□□ -0.71
VCAN-210ENST00000513960 TNNC1P63316 161 aa10.6□□□□□ -0.71
VCAN-210ENST00000513960 TRADDQ15628 312 aa10.6□□□□□ -0.71
VCAN-210ENST00000513960 KRT25Q7Z3Z0 450 aa10.6□□□□□ -0.71
VCAN-210ENST00000513960 AMIGO3Q86WK7 504 aa10.6□□□□□ -0.71
VCAN-210ENST00000513960 DDX42Q86XP3 938 aaKnown RBP eCLIP10.6□□□□□ -0.71
VCAN-210ENST00000513960 C4orf32Q8N8J7 132 aa10.6□□□□□ -0.71
VCAN-210ENST00000513960 ATP6V1G3Q96LB4 118 aa10.6□□□□□ -0.71
VCAN-210ENST00000513960 CD209Q9NNX6 404 aa10.6□□□□□ -0.71
VCAN-210ENST00000513960 OPLAHO14841 1288 aa10.59□□□□□ -0.71
VCAN-210ENST00000513960 ATP2B4P23634 1241 aa10.59□□□□□ -0.71
VCAN-210ENST00000513960 NONOQ15233 471 aaKnown RBP eCLIP10.59□□□□□ -0.71
VCAN-210ENST00000513960 ADAT2Q7Z6V5 191 aaKnown RBP10.59□□□□□ -0.71
VCAN-210ENST00000513960 CCDC170Q8IYT3 715 aa10.59□□□□□ -0.71
VCAN-210ENST00000513960 ZNF622Q969S3 477 aaKnown RBP eCLIP10.59□□□□□ -0.71
VCAN-210ENST00000513960 CYFIP2Q96F07 1278 aa10.59□□□□□ -0.71
VCAN-210ENST00000513960 AP1M1Q9BXS5 423 aa10.59□□□□□ -0.71
VCAN-210ENST00000513960 TMEM60Q9H2L4 133 aa10.59□□□□□ -0.71
VCAN-210ENST00000513960 CCDC88AQ3V6T2 1871 aa10.59□□□□□ -0.71
VCAN-210ENST00000513960 PALM3A6NDB9 673 aaPredicted RBP10.59□□□□□ -0.71
VCAN-210ENST00000513960 SMCO2A6NFE2 343 aa10.59□□□□□ -0.71
VCAN-210ENST00000513960 LRRC53A6NM62 1247 aa10.59□□□□□ -0.71
VCAN-210ENST00000513960 PHF20L1A8MW92 1017 aa10.59□□□□□ -0.71
VCAN-210ENST00000513960 STXBP3O00186 592 aa10.59□□□□□ -0.71
VCAN-210ENST00000513960 CYTH3O43739 400 aa10.59□□□□□ -0.71
VCAN-210ENST00000513960 CCNT1O60563 726 aaKnown RBP10.59□□□□□ -0.71
VCAN-210ENST00000513960 GPSM2P81274 684 aa10.59□□□□□ -0.71
VCAN-210ENST00000513960 FAM133BQ5BKY9 247 aaKnown RBP10.59□□□□□ -0.71
VCAN-210ENST00000513960 MFSD14BQ5SR56 506 aa10.59□□□□□ -0.71
VCAN-210ENST00000513960 NAIF1Q69YI7 327 aaPredicted RBP10.59□□□□□ -0.71
VCAN-210ENST00000513960 MMGT1Q8N4V1 131 aa10.59□□□□□ -0.71
VCAN-210ENST00000513960 DAGLBQ8NCG7 672 aa10.59□□□□□ -0.71
VCAN-210ENST00000513960 DYDC1Q8WWB3 177 aa10.59□□□□□ -0.71
VCAN-210ENST00000513960 DNAJC7Q99615 494 aa10.59□□□□□ -0.71
VCAN-210ENST00000513960 CPVLQ9H3G5 476 aa10.59□□□□□ -0.71
VCAN-210ENST00000513960 BICDL2A1A5D9 508 aa10.59□□□□□ -0.71
VCAN-210ENST00000513960 C6orf229H3BNL8 230 aa10.59□□□□□ -0.71
VCAN-210ENST00000513960 MYL1P05976 194 aa10.59□□□□□ -0.71
VCAN-210ENST00000513960 VIMP08670 466 aaKnown RBP10.59□□□□□ -0.71
VCAN-210ENST00000513960 FCER1AP12319 257 aa10.59□□□□□ -0.71
VCAN-210ENST00000513960 CDC25CP30307 473 aa10.59□□□□□ -0.71
VCAN-210ENST00000513960 SLC1A4P43007 532 aa10.59□□□□□ -0.71
VCAN-210ENST00000513960 MYO1EQ12965 1108 aa10.59□□□□□ -0.71
VCAN-210ENST00000513960 CYB5D1Q6P9G0 228 aa10.59□□□□□ -0.71
VCAN-210ENST00000513960 GOLPH3Q9H4A6 298 aa10.59□□□□□ -0.71
VCAN-210ENST00000513960 VCPKMTQ9H867 229 aa10.59□□□□□ -0.71
VCAN-210ENST00000513960 GGT7Q9UJ14 662 aa10.59□□□□□ -0.71
VCAN-210ENST00000513960 ROBO3Q96MS0 1386 aa10.59□□□□□ -0.71
VCAN-210ENST00000513960 LRRC10BA6NIK2 292 aa10.58□□□□□ -0.71
VCAN-210ENST00000513960 PALMO75781 387 aa10.58□□□□□ -0.71
VCAN-210ENST00000513960 GSCP56915 257 aaPredicted RBP10.58□□□□□ -0.71
VCAN-210ENST00000513960 GKAP1Q5VSY0 366 aaPredicted RBP10.58□□□□□ -0.71
VCAN-210ENST00000513960 USP17L2Q6R6M4 530 aa10.58□□□□□ -0.71
VCAN-210ENST00000513960 TBC1D1Q86TI0 1168 aaPredicted RBP10.58□□□□□ -0.71
VCAN-210ENST00000513960 SLC51AQ86UW1 340 aa10.58□□□□□ -0.71
VCAN-210ENST00000513960 CABP7Q86V35 215 aa10.58□□□□□ -0.71
VCAN-210ENST00000513960 RBM17Q96I25 401 aaKnown RBP10.58□□□□□ -0.71
VCAN-210ENST00000513960 SPZ1Q9BXG8 430 aa10.58□□□□□ -0.71
VCAN-210ENST00000513960 RTFDC1Q9BY42 306 aaPredicted RBP10.58□□□□□ -0.71
VCAN-210ENST00000513960 CCSER1Q9C0I3 900 aa10.58□□□□□ -0.71
VCAN-210ENST00000513960 KANSL2Q9H9L4 492 aa10.58□□□□□ -0.71
VCAN-210ENST00000513960 IRS2Q9Y4H2 1338 aa10.58□□□□□ -0.72
VCAN-210ENST00000513960 ZNF233A6NK53 670 aa10.58□□□□□ -0.72
VCAN-210ENST00000513960 OR52Z1P0C646 297 aa10.58□□□□□ -0.72
VCAN-210ENST00000513960 IFNAR2P48551 515 aa10.58□□□□□ -0.72
VCAN-210ENST00000513960 SARNPP82979 210 aaKnown RBP10.58□□□□□ -0.72
VCAN-210ENST00000513960 PRR5LQ6MZQ0 368 aa10.58□□□□□ -0.72
VCAN-210ENST00000513960 ADSSL1Q8N142 457 aa10.58□□□□□ -0.72
VCAN-210ENST00000513960 NEDD1Q8NHV4 660 aa10.58□□□□□ -0.72
VCAN-210ENST00000513960 P2RX5Q93086 422 aa10.58□□□□□ -0.72
VCAN-210ENST00000513960 TRIM6Q9C030 488 aaPredicted RBP10.58□□□□□ -0.72
VCAN-210ENST00000513960 SH2D4AQ9H788 454 aa10.58□□□□□ -0.72
VCAN-210ENST00000513960 ZC3H4Q9UPT8 1303 aaKnown RBP10.58□□□□□ -0.72
VCAN-210ENST00000513960 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP10.58□□□□□ -0.72
VCAN-210ENST00000513960 GMNCA6NCL1 334 aa10.58□□□□□ -0.72
VCAN-210ENST00000513960 UBAP1LF5GYI3 381 aa10.58□□□□□ -0.72
VCAN-210ENST00000513960 LRRC41Q15345 812 aa10.58□□□□□ -0.72
VCAN-210ENST00000513960 AK8Q96MA6 479 aa10.58□□□□□ -0.72
VCAN-210ENST00000513960 SH3GL2Q99962 352 aa10.58□□□□□ -0.72
VCAN-210ENST00000513960 TBC1D7Q9P0N9 293 aa10.58□□□□□ -0.72
VCAN-210ENST00000513960 STK38LQ9Y2H1 464 aa10.58□□□□□ -0.72
VCAN-210ENST00000513960 FSBPO95073 299 aa10.58□□□□□ -0.72
VCAN-210ENST00000513960 PRPHP41219 470 aa10.58□□□□□ -0.72
VCAN-210ENST00000513960 AMPD3Q01432 767 aa10.58□□□□□ -0.72
VCAN-210ENST00000513960 ANKRD40Q6AI12 368 aa10.58□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms