RNA–Protein interactions for RNA: ENST00000513643.5

RNF4-221, Transcript of ring finger protein 4, humanhuman

TSL 3

Gene RNF4, Length 516 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-221ENST00000513643 C6orf50Q9HD87 102 aa11.11□□□□□ -0.63
RNF4-221ENST00000513643 KCNH7Q9NS40 1196 aa11.11□□□□□ -0.63
RNF4-221ENST00000513643 TRMT13Q9NUP7 481 aaKnown RBP11.11□□□□□ -0.63
RNF4-221ENST00000513643 CHD9Q3L8U1 2897 aa11.11□□□□□ -0.63
RNF4-221ENST00000513643 STK36Q9NRP7 1315 aa11.1□□□□□ -0.63
RNF4-221ENST00000513643 GSTTP1A0A1W2PQM5 241 aa11.1□□□□□ -0.63
RNF4-221ENST00000513643 FAM86B1E9PN63 330 aa11.1□□□□□ -0.63
RNF4-221ENST00000513643 SOX1O00570 391 aaPredicted RBP11.1□□□□□ -0.63
RNF4-221ENST00000513643 TLR3O15455 904 aaKnown RBP11.1□□□□□ -0.63
RNF4-221ENST00000513643 DHX15O43143 795 aaKnown RBP11.1□□□□□ -0.63
RNF4-221ENST00000513643 LARGE1O95461 756 aa11.1□□□□□ -0.63
RNF4-221ENST00000513643 FAM86B2P0C5J1 330 aa11.1□□□□□ -0.63
RNF4-221ENST00000513643 SUPT20HL2P0C7V6 817 aa11.1□□□□□ -0.63
RNF4-221ENST00000513643 ARP10275 920 aa11.1□□□□□ -0.63
RNF4-221ENST00000513643 RAG1P15918 1043 aa11.1□□□□□ -0.63
RNF4-221ENST00000513643 PSEN2P49810 448 aa11.1□□□□□ -0.63
RNF4-221ENST00000513643 NEK4P51957 841 aa11.1□□□□□ -0.63
RNF4-221ENST00000513643 ADAM17P78536 824 aa11.1□□□□□ -0.63
RNF4-221ENST00000513643 SSRP1Q08945 709 aaKnown RBP11.1□□□□□ -0.63
RNF4-221ENST00000513643 MTMR1Q13613 665 aa11.1□□□□□ -0.63
RNF4-221ENST00000513643 RASIP1Q5U651 963 aa11.1□□□□□ -0.63
RNF4-221ENST00000513643 GTF3C6Q969F1 213 aa11.1□□□□□ -0.63
RNF4-221ENST00000513643 LENG9Q96B70 501 aa11.1□□□□□ -0.63
RNF4-221ENST00000513643 PGBD1Q96JS3 809 aa11.1□□□□□ -0.63
RNF4-221ENST00000513643 AIFM3Q96NN9 605 aa11.1□□□□□ -0.63
RNF4-221ENST00000513643 LBHD1Q9BQE6 289 aaPredicted RBP11.1□□□□□ -0.63
RNF4-221ENST00000513643 WNT8AQ9H1J5 351 aa11.1□□□□□ -0.63
RNF4-221ENST00000513643 MLXIPQ9HAP2 919 aa11.1□□□□□ -0.63
RNF4-221ENST00000513643 PRDM5Q9NQX1 630 aaPredicted RBP11.1□□□□□ -0.63
RNF4-221ENST00000513643 VPS54Q9P1Q0 977 aa11.1□□□□□ -0.63
RNF4-221ENST00000513643 GTF2IRD1Q9UHL9 959 aa11.1□□□□□ -0.63
RNF4-221ENST00000513643 NFASCO94856 1347 aa11.09□□□□□ -0.63
RNF4-221ENST00000513643 UMODL1Q5DID0 1318 aa11.09□□□□□ -0.63
RNF4-221ENST00000513643 CPLX1O14810 134 aa11.09□□□□□ -0.63
RNF4-221ENST00000513643 ATG7O95352 703 aa11.09□□□□□ -0.63
RNF4-221ENST00000513643 SLC34A2O95436 690 aa11.09□□□□□ -0.63
RNF4-221ENST00000513643 LGALS2P05162 132 aa11.09□□□□□ -0.63
RNF4-221ENST00000513643 AKAP17AQ02040 695 aaKnown RBP11.09□□□□□ -0.63
RNF4-221ENST00000513643 STK3Q13188 491 aa11.09□□□□□ -0.63
RNF4-221ENST00000513643 ITGB3BPQ13352 177 aaPredicted RBP11.09□□□□□ -0.63
RNF4-221ENST00000513643 MFSD10Q14728 455 aa11.09□□□□□ -0.63
RNF4-221ENST00000513643 GPNMBQ14956 572 aa11.09□□□□□ -0.63
RNF4-221ENST00000513643 SHHQ15465 462 aa11.09□□□□□ -0.63
RNF4-221ENST00000513643 TRIM71Q2Q1W2 868 aaKnown RBP11.09□□□□□ -0.63
RNF4-221ENST00000513643 C9orf50Q5SZB4 431 aa11.09□□□□□ -0.63
RNF4-221ENST00000513643 JAKMIP3Q5VZ66 844 aa11.09□□□□□ -0.63
RNF4-221ENST00000513643 GALNT17Q6IS24 598 aa11.09□□□□□ -0.63
RNF4-221ENST00000513643 GDF6Q6KF10 455 aaPredicted RBP11.09□□□□□ -0.63
RNF4-221ENST00000513643 GPR153Q6NV75 609 aa11.09□□□□□ -0.63
RNF4-221ENST00000513643 TRAF7Q6Q0C0 670 aa11.09□□□□□ -0.63
RNF4-221ENST00000513643 TRIM22Q8IYM9 498 aa11.09□□□□□ -0.63
RNF4-221ENST00000513643 REXO1Q8N1G1 1221 aaKnown RBP11.09□□□□□ -0.63
RNF4-221ENST00000513643 CCDC148Q8NFR7 591 aa11.09□□□□□ -0.63
RNF4-221ENST00000513643 BICD2Q8TD16 824 aa11.09□□□□□ -0.63
RNF4-221ENST00000513643 DHX38Q92620 1227 aaKnown RBP11.09□□□□□ -0.63
RNF4-221ENST00000513643 PHF20Q9BVI0 1012 aa11.09□□□□□ -0.63
RNF4-221ENST00000513643 KATNAL1Q9BW62 490 aa11.09□□□□□ -0.63
RNF4-221ENST00000513643 SLKQ9H2G2 1235 aaPredicted RBP11.09□□□□□ -0.63
RNF4-221ENST00000513643 EHMT1Q9H9B1 1298 aa11.09□□□□□ -0.63
RNF4-221ENST00000513643 AGO4Q9HCK5 861 aaKnown RBP11.09□□□□□ -0.63
RNF4-221ENST00000513643 HDAC6Q9UBN7 1215 aa11.09□□□□□ -0.63
RNF4-221ENST00000513643 PCDHA4Q9UN74 947 aa11.09□□□□□ -0.63
RNF4-221ENST00000513643 CDH23Q9H251 3354 aa11.08□□□□□ -0.64
RNF4-221ENST00000513643 COL6A3P12111 3177 aa11.08□□□□□ -0.64
RNF4-221ENST00000513643 CYP3A7-CYP3A51PA0A087WV96 503 aa11.08□□□□□ -0.64
RNF4-221ENST00000513643 IGKV6D-21A0A0A0MT36 114 aa11.08□□□□□ -0.64
RNF4-221ENST00000513643 H3BRB1 525 aa11.08□□□□□ -0.64
RNF4-221ENST00000513643 PITPNM1O00562 1244 aa11.08□□□□□ -0.64
RNF4-221ENST00000513643 LGR5O75473 907 aa11.08□□□□□ -0.64
RNF4-221ENST00000513643 CDKL5O76039 1030 aa11.08□□□□□ -0.64
RNF4-221ENST00000513643 ZNF286BP0CG31 522 aa11.08□□□□□ -0.64
RNF4-221ENST00000513643 CYP2C9P11712 490 aa11.08□□□□□ -0.64
RNF4-221ENST00000513643 CYP3A7P24462 503 aa11.08□□□□□ -0.64
RNF4-221ENST00000513643 CYP2C18P33260 490 aa11.08□□□□□ -0.64
RNF4-221ENST00000513643 USP11P51784 963 aa11.08□□□□□ -0.64
RNF4-221ENST00000513643 FPGSQ05932 587 aa11.08□□□□□ -0.64
RNF4-221ENST00000513643 KIAA0753Q2KHM9 967 aa11.08□□□□□ -0.64
RNF4-221ENST00000513643 TMEM240Q5SV17 173 aa11.08□□□□□ -0.64
RNF4-221ENST00000513643 CPLX2Q6PUV4 134 aaKnown RBP11.08□□□□□ -0.64
RNF4-221ENST00000513643 NSUN7Q8NE18 718 aaKnown RBP11.08□□□□□ -0.64
RNF4-221ENST00000513643 IL27Q8NEV9 243 aa11.08□□□□□ -0.64
RNF4-221ENST00000513643 RASGRP4Q8TDF6 673 aa11.08□□□□□ -0.64
RNF4-221ENST00000513643 PPP1R13LQ8WUF5 828 aa11.08□□□□□ -0.64
RNF4-221ENST00000513643 SEPT1Q8WYJ6 367 aa11.08□□□□□ -0.64
RNF4-221ENST00000513643 MBOAT7Q96N66 472 aa11.08□□□□□ -0.64
RNF4-221ENST00000513643 PCYT2Q99447 389 aa11.08□□□□□ -0.64
RNF4-221ENST00000513643 C22orf23Q9BZE7 217 aa11.08□□□□□ -0.64
RNF4-221ENST00000513643 HIPK3Q9H422 1215 aa11.08□□□□□ -0.64
RNF4-221ENST00000513643 TUT1Q9H6E5 874 aaKnown RBP11.08□□□□□ -0.64
RNF4-221ENST00000513643 MYH7BA7E2Y1 1941 aa11.07□□□□□ -0.64
RNF4-221ENST00000513643 CHD7Q9P2D1 2997 aa11.07□□□□□ -0.64
RNF4-221ENST00000513643 SORBS3O60504 671 aa11.07□□□□□ -0.64
RNF4-221ENST00000513643 CSF2RAP15509 400 aa11.07□□□□□ -0.64
RNF4-221ENST00000513643 PTGISQ16647 500 aa11.07□□□□□ -0.64
RNF4-221ENST00000513643 TMEM199Q8N511 208 aa11.07□□□□□ -0.64
RNF4-221ENST00000513643 NECAB1Q8N987 351 aa11.07□□□□□ -0.64
RNF4-221ENST00000513643 LIMCH1Q9UPQ0 1083 aa11.07□□□□□ -0.64
RNF4-221ENST00000513643 CCNE2O96020 404 aa11.06□□□□□ -0.64
RNF4-221ENST00000513643 IQCF3P0C7M6 154 aa11.06□□□□□ -0.64
RNF4-221ENST00000513643 TCF7P36402 384 aaPredicted RBP11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms