RNA–Protein interactions for RNA: ENST00000513024.5

LIMCH1-218, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,129 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-218ENST00000513024 STAT1P42224 750 aa9.43□□□□□ -0.9
LIMCH1-218ENST00000513024 ADCY1Q08828 1119 aa9.43□□□□□ -0.9
LIMCH1-218ENST00000513024 DPCR1Q3MIW9 517 aa9.43□□□□□ -0.9
LIMCH1-218ENST00000513024 USP33Q8TEY7 942 aa9.43□□□□□ -0.9
LIMCH1-218ENST00000513024 SUCLG2Q96I99 432 aa9.43□□□□□ -0.9
LIMCH1-218ENST00000513024 UPF3AQ9H1J1 476 aaKnown RBP9.43□□□□□ -0.9
LIMCH1-218ENST00000513024 STK10O94804 968 aaKnown RBP9.42□□□□□ -0.9
LIMCH1-218ENST00000513024 SLC4A1P02730 911 aa9.42□□□□□ -0.9
LIMCH1-218ENST00000513024 SERPINB1P30740 379 aa9.42□□□□□ -0.9
LIMCH1-218ENST00000513024 STX1BP61266 288 aa9.42□□□□□ -0.9
LIMCH1-218ENST00000513024 MRPS35P82673 323 aaKnown RBP9.42□□□□□ -0.9
LIMCH1-218ENST00000513024 C11orf57Q6ZUT1 292 aaPredicted RBP9.42□□□□□ -0.9
LIMCH1-218ENST00000513024 MYCT1Q8N699 235 aa9.42□□□□□ -0.9
LIMCH1-218ENST00000513024 TRIM8Q9BZR9 551 aa9.42□□□□□ -0.9
LIMCH1-218ENST00000513024 HAUS2Q9NVX0 235 aa9.42□□□□□ -0.9
LIMCH1-218ENST00000513024 KCNG1Q9UIX4 513 aa9.42□□□□□ -0.9
LIMCH1-218ENST00000513024 A0A0D9SFI3 127 aa9.42□□□□□ -0.9
LIMCH1-218ENST00000513024 ARHGEF35A5YM69 484 aa9.42□□□□□ -0.9
LIMCH1-218ENST00000513024 BCRP11274 1271 aa9.42□□□□□ -0.9
LIMCH1-218ENST00000513024 PRKG1Q13976 671 aa9.42□□□□□ -0.9
LIMCH1-218ENST00000513024 SKIV2LQ15477 1246 aaKnown RBP9.42□□□□□ -0.9
LIMCH1-218ENST00000513024 FAM47CQ5HY64 1035 aa9.42□□□□□ -0.9
LIMCH1-218ENST00000513024 ARL10Q8N8L6 244 aa9.42□□□□□ -0.9
LIMCH1-218ENST00000513024 AP5M1Q9H0R1 490 aa9.42□□□□□ -0.9
LIMCH1-218ENST00000513024 AZI2Q9H6S1 392 aa9.42□□□□□ -0.9
LIMCH1-218ENST00000513024 MAP3K5Q99683 1374 aa9.42□□□□□ -0.9
LIMCH1-218ENST00000513024 TRIM66O15016 1216 aa9.42□□□□□ -0.9
LIMCH1-218ENST00000513024 NBNO60934 754 aa9.42□□□□□ -0.9
LIMCH1-218ENST00000513024 DCTN3O75935 186 aa9.42□□□□□ -0.9
LIMCH1-218ENST00000513024 CD19P15391 556 aa9.42□□□□□ -0.9
LIMCH1-218ENST00000513024 SPATA1Q5VX52 437 aa9.42□□□□□ -0.9
LIMCH1-218ENST00000513024 OLFML1Q6UWY5 402 aa9.42□□□□□ -0.9
LIMCH1-218ENST00000513024 NOSTRINQ8IVI9 506 aa9.42□□□□□ -0.9
LIMCH1-218ENST00000513024 RAD21L1Q9H4I0 556 aa9.42□□□□□ -0.9
LIMCH1-218ENST00000513024 MRPL44Q9H9J2 332 aaKnown RBP9.42□□□□□ -0.9
LIMCH1-218ENST00000513024 CLIC4Q9Y696 253 aa9.42□□□□□ -0.9
LIMCH1-218ENST00000513024 ABCC4O15439 1325 aa9.42□□□□□ -0.9
LIMCH1-218ENST00000513024 SETBP1Q9Y6X0 1596 aa9.42□□□□□ -0.9
LIMCH1-218ENST00000513024 BTBD18B2RXH4 712 aa9.42□□□□□ -0.9
LIMCH1-218ENST00000513024 SMTNP53814 917 aa9.42□□□□□ -0.9
LIMCH1-218ENST00000513024 STRN3Q13033 797 aa9.42□□□□□ -0.9
LIMCH1-218ENST00000513024 ODR4Q5SWX8 454 aa9.42□□□□□ -0.9
LIMCH1-218ENST00000513024 TMC5Q6UXY8 1006 aa9.42□□□□□ -0.9
LIMCH1-218ENST00000513024 HORMAD1Q86X24 394 aa9.42□□□□□ -0.9
LIMCH1-218ENST00000513024 TAB3Q8N5C8 712 aaPredicted RBP9.42□□□□□ -0.9
LIMCH1-218ENST00000513024 ING2Q9H160 280 aa9.42□□□□□ -0.9
LIMCH1-218ENST00000513024 ZSWIM6Q9HCJ5 1215 aa9.42□□□□□ -0.9
LIMCH1-218ENST00000513024 EPB41L5Q9HCM4 733 aa9.42□□□□□ -0.9
LIMCH1-218ENST00000513024 DNM3Q9UQ16 869 aa9.42□□□□□ -0.9
LIMCH1-218ENST00000513024 RWDD3Q9Y3V2 267 aa9.42□□□□□ -0.9
LIMCH1-218ENST00000513024 SESN1Q9Y6P5 492 aa9.42□□□□□ -0.9
LIMCH1-218ENST00000513024 PHLPP2Q6ZVD8 1323 aa9.42□□□□□ -0.9
LIMCH1-218ENST00000513024 VWDEQ8N2E2 1590 aa9.42□□□□□ -0.9
LIMCH1-218ENST00000513024 KAT6BQ8WYB5 2073 aa9.41□□□□□ -0.9
LIMCH1-218ENST00000513024 ESYT2A0FGR8 921 aa9.41□□□□□ -0.9
LIMCH1-218ENST00000513024 TMEM191CA6NGB0 347 aa9.41□□□□□ -0.9
LIMCH1-218ENST00000513024 LRRIQ3A6PVS8 624 aaPredicted RBP9.41□□□□□ -0.9
LIMCH1-218ENST00000513024 H0YC42 278 aa9.41□□□□□ -0.9
LIMCH1-218ENST00000513024 CHL1O00533 1208 aa9.41□□□□□ -0.9
LIMCH1-218ENST00000513024 RASGRF2O14827 1237 aa9.41□□□□□ -0.9
LIMCH1-218ENST00000513024 GYG2O15488 501 aa9.41□□□□□ -0.9
LIMCH1-218ENST00000513024 CAND2O75155 1236 aa9.41□□□□□ -0.9
LIMCH1-218ENST00000513024 ZNF189O75820 626 aaPredicted RBP9.41□□□□□ -0.9
LIMCH1-218ENST00000513024 FMNL1O95466 1100 aaPredicted RBP9.41□□□□□ -0.9
LIMCH1-218ENST00000513024 TMEM191BP0C7N4 346 aa9.41□□□□□ -0.9
LIMCH1-218ENST00000513024 ATP2B4P23634 1241 aa9.41□□□□□ -0.9
LIMCH1-218ENST00000513024 KIF23Q02241 960 aaPredicted RBP9.41□□□□□ -0.9
LIMCH1-218ENST00000513024 CALCRLQ16602 461 aa9.41□□□□□ -0.9
LIMCH1-218ENST00000513024 TTLL7Q6ZT98 887 aa9.41□□□□□ -0.9
LIMCH1-218ENST00000513024 SLC10A4Q96EP9 437 aa9.41□□□□□ -0.9
LIMCH1-218ENST00000513024 GID8Q9NWU2 228 aa9.41□□□□□ -0.9
LIMCH1-218ENST00000513024 DAPK3O43293 454 aa9.41□□□□□ -0.9
LIMCH1-218ENST00000513024 S100A9P06702 114 aaKnown RBP9.41□□□□□ -0.9
LIMCH1-218ENST00000513024 POLR2FP61218 127 aaKnown RBP9.41□□□□□ -0.9
LIMCH1-218ENST00000513024 ADCK1Q86TW2 530 aa9.41□□□□□ -0.9
LIMCH1-218ENST00000513024 GRK7Q8WTQ7 553 aa9.41□□□□□ -0.9
LIMCH1-218ENST00000513024 LZICQ8WZA0 190 aa9.41□□□□□ -0.9
LIMCH1-218ENST00000513024 ZBED2Q9BTP6 218 aa9.41□□□□□ -0.9
LIMCH1-218ENST00000513024 TRAIPQ9BWF2 469 aa9.41□□□□□ -0.9
LIMCH1-218ENST00000513024 KIF9Q9HAQ2 790 aa9.41□□□□□ -0.9
LIMCH1-218ENST00000513024 SLC38A10Q9HBR0 1119 aa9.41□□□□□ -0.9
LIMCH1-218ENST00000513024 NCOA3Q9Y6Q9 1424 aa9.41□□□□□ -0.9
LIMCH1-218ENST00000513024 ITGA6P23229 1130 aa9.41□□□□□ -0.9
LIMCH1-218ENST00000513024 HIBADHP31937 336 aaKnown RBP9.41□□□□□ -0.9
LIMCH1-218ENST00000513024 ZAP70P43403 619 aa9.41□□□□□ -0.9
LIMCH1-218ENST00000513024 STAT2P52630 851 aa9.41□□□□□ -0.9
LIMCH1-218ENST00000513024 RASSF7Q02833 373 aa9.41□□□□□ -0.9
LIMCH1-218ENST00000513024 AP1B1Q10567 949 aa9.41□□□□□ -0.9
LIMCH1-218ENST00000513024 STX3Q13277 289 aa9.41□□□□□ -0.9
LIMCH1-218ENST00000513024 TCP11X2Q5H9J9 407 aa9.41□□□□□ -0.9
LIMCH1-218ENST00000513024 BBOF1Q8ND07 529 aa9.41□□□□□ -0.9
LIMCH1-218ENST00000513024 MORC2Q9Y6X9 1032 aaPredicted RBP9.41□□□□□ -0.9
LIMCH1-218ENST00000513024 HEXIM1O94992 359 aaKnown RBP9.41□□□□□ -0.9
LIMCH1-218ENST00000513024 CXCR5P32302 372 aa9.41□□□□□ -0.9
LIMCH1-218ENST00000513024 PDE6CP51160 858 aa9.41□□□□□ -0.9
LIMCH1-218ENST00000513024 KRT25Q7Z3Z0 450 aa9.41□□□□□ -0.9
LIMCH1-218ENST00000513024 TTLL6Q8N841 843 aa9.41□□□□□ -0.9
LIMCH1-218ENST00000513024 PROCA1Q8NCQ7 364 aaPredicted RBP9.41□□□□□ -0.9
LIMCH1-218ENST00000513024 FAM193BQ96PV7 902 aaPredicted RBP9.41□□□□□ -0.9
LIMCH1-218ENST00000513024 ELAC2Q9BQ52 826 aaKnown RBP9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 75.1 ms