RNA–Protein interactions for RNA: ENST00000509490.5

PDGFRA-208, Transcript of platelet derived growth factor receptor alpha, humanhuman

TSL 1 (best)

Gene PDGFRA, Length 2,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRA-208ENST00000509490 KCNQ2O43526 872 aa10.18□□□□□ -0.78
PDGFRA-208ENST00000509490 PAK2Q13177 524 aa10.18□□□□□ -0.78
PDGFRA-208ENST00000509490 NFIL3Q16649 462 aa10.18□□□□□ -0.78
PDGFRA-208ENST00000509490 BMT2Q1RMZ1 405 aa10.18□□□□□ -0.78
PDGFRA-208ENST00000509490 FAM83BQ5T0W9 1011 aa10.18□□□□□ -0.78
PDGFRA-208ENST00000509490 SFMBT2Q5VUG0 894 aa10.18□□□□□ -0.78
PDGFRA-208ENST00000509490 NFRKBQ6P4R8 1299 aa10.18□□□□□ -0.78
PDGFRA-208ENST00000509490 USP17L2Q6R6M4 530 aa10.18□□□□□ -0.78
PDGFRA-208ENST00000509490 SND1Q7KZF4 910 aaKnown RBP eCLIP10.18□□□□□ -0.78
PDGFRA-208ENST00000509490 C3orf20Q8ND61 904 aa10.18□□□□□ -0.78
PDGFRA-208ENST00000509490 HDAC7Q8WUI4 952 aa10.18□□□□□ -0.78
PDGFRA-208ENST00000509490 CRYGNQ8WXF5 182 aa10.18□□□□□ -0.78
PDGFRA-208ENST00000509490 CD209Q9NNX6 404 aa10.18□□□□□ -0.78
PDGFRA-208ENST00000509490 KCNMB3Q9NPA1 279 aa10.18□□□□□ -0.78
PDGFRA-208ENST00000509490 TRAF3IP3Q9Y228 551 aa10.18□□□□□ -0.78
PDGFRA-208ENST00000509490 LTBP4Q8N2S1 1624 aa10.18□□□□□ -0.78
PDGFRA-208ENST00000509490 A0A0A6YYK5 440 aaPredicted RBP10.18□□□□□ -0.78
PDGFRA-208ENST00000509490 TRIM66O15016 1216 aa10.18□□□□□ -0.78
PDGFRA-208ENST00000509490 HSPA9P38646 679 aaKnown RBP10.18□□□□□ -0.78
PDGFRA-208ENST00000509490 TXKP42681 527 aa10.18□□□□□ -0.78
PDGFRA-208ENST00000509490 USP11P51784 963 aa10.18□□□□□ -0.78
PDGFRA-208ENST00000509490 ZNF543Q08ER8 600 aa10.18□□□□□ -0.78
PDGFRA-208ENST00000509490 DIXDC1Q155Q3 683 aa10.18□□□□□ -0.78
PDGFRA-208ENST00000509490 CDC37Q16543 378 aaPredicted RBP10.18□□□□□ -0.78
PDGFRA-208ENST00000509490 SPDYCQ5MJ68 293 aa10.18□□□□□ -0.78
PDGFRA-208ENST00000509490 YTHDF3Q7Z739 585 aaKnown RBP10.18□□□□□ -0.78
PDGFRA-208ENST00000509490 SUGP1Q8IWZ8 645 aaKnown RBP10.18□□□□□ -0.78
PDGFRA-208ENST00000509490 SNX29Q8TEQ0 813 aa10.18□□□□□ -0.78
PDGFRA-208ENST00000509490 CDK5RAP3Q96JB5 506 aa10.18□□□□□ -0.78
PDGFRA-208ENST00000509490 CAPS2Q9BXY5 557 aa10.18□□□□□ -0.78
PDGFRA-208ENST00000509490 DEF6Q9H4E7 631 aa10.18□□□□□ -0.78
PDGFRA-208ENST00000509490 FAM207AQ9NSI2 230 aaPredicted RBP10.18□□□□□ -0.78
PDGFRA-208ENST00000509490 USP17L5A8MUK1 530 aa10.17□□□□□ -0.78
PDGFRA-208ENST00000509490 TBX3O15119 743 aa10.17□□□□□ -0.78
PDGFRA-208ENST00000509490 ZPR1O75312 459 aa10.17□□□□□ -0.78
PDGFRA-208ENST00000509490 GOLGA8HP0CJ92 632 aa10.17□□□□□ -0.78
PDGFRA-208ENST00000509490 SLC1A4P43007 532 aa10.17□□□□□ -0.78
PDGFRA-208ENST00000509490 NPEPPSP55786 919 aa10.17□□□□□ -0.78
PDGFRA-208ENST00000509490 FAM26FQ5R3K3 315 aa10.17□□□□□ -0.78
PDGFRA-208ENST00000509490 GPATCH4Q5T3I0 446 aaKnown RBP10.17□□□□□ -0.78
PDGFRA-208ENST00000509490 C8orf74Q6P047 294 aa10.17□□□□□ -0.78
PDGFRA-208ENST00000509490 EPM2AIP1Q7L775 607 aaPredicted RBP10.17□□□□□ -0.78
PDGFRA-208ENST00000509490 KCNK18Q7Z418 384 aa10.17□□□□□ -0.78
PDGFRA-208ENST00000509490 FRMD5Q7Z6J6 570 aa10.17□□□□□ -0.78
PDGFRA-208ENST00000509490 MAPKAPK5Q8IW41 473 aa10.17□□□□□ -0.78
PDGFRA-208ENST00000509490 TEX11Q8IYF3 940 aa10.17□□□□□ -0.78
PDGFRA-208ENST00000509490 ACTRT1Q8TDG2 376 aa10.17□□□□□ -0.78
PDGFRA-208ENST00000509490 SMCR8Q8TEV9 937 aaPredicted RBP10.17□□□□□ -0.78
PDGFRA-208ENST00000509490 MMRN2Q9H8L6 949 aa10.17□□□□□ -0.78
PDGFRA-208ENST00000509490 BIN2Q9UBW5 565 aaPredicted RBP10.17□□□□□ -0.78
PDGFRA-208ENST00000509490 HSF2BPO75031 334 aa10.17□□□□□ -0.78
PDGFRA-208ENST00000509490 TDP2O95551 362 aa10.17□□□□□ -0.78
PDGFRA-208ENST00000509490 HOXA10P31260 410 aaPredicted RBP10.17□□□□□ -0.78
PDGFRA-208ENST00000509490 EZH2Q15910 746 aaKnown RBP10.17□□□□□ -0.78
PDGFRA-208ENST00000509490 TTMPQ5BVD1 217 aa10.17□□□□□ -0.78
PDGFRA-208ENST00000509490 TMC4Q7Z404 712 aa10.17□□□□□ -0.78
PDGFRA-208ENST00000509490 SLFN11Q7Z7L1 901 aa10.17□□□□□ -0.78
PDGFRA-208ENST00000509490 CCDC65Q8IXS2 484 aa10.17□□□□□ -0.78
PDGFRA-208ENST00000509490 TSEN2Q8NCE0 465 aaKnown RBP10.17□□□□□ -0.78
PDGFRA-208ENST00000509490 SCFD2Q8WU76 684 aa10.17□□□□□ -0.78
PDGFRA-208ENST00000509490 SEC14L1Q92503 715 aa10.17□□□□□ -0.78
PDGFRA-208ENST00000509490 PBKQ96KB5 322 aa10.17□□□□□ -0.78
PDGFRA-208ENST00000509490 RBM12Q9NTZ6 932 aaKnown RBP10.17□□□□□ -0.78
PDGFRA-208ENST00000509490 TMEM260Q9NX78 707 aa10.17□□□□□ -0.78
PDGFRA-208ENST00000509490 MYH10P35580 1976 aa10.17□□□□□ -0.78
PDGFRA-208ENST00000509490 GTPBP10A4D1E9 387 aaKnown RBP10.17□□□□□ -0.78
PDGFRA-208ENST00000509490 KLRG2A4D1S0 409 aaPredicted RBP10.17□□□□□ -0.78
PDGFRA-208ENST00000509490 PHACTR2O75167 634 aa10.17□□□□□ -0.78
PDGFRA-208ENST00000509490 VPS72Q15906 364 aa10.17□□□□□ -0.78
PDGFRA-208ENST00000509490 CCDC181Q5TID7 509 aa10.17□□□□□ -0.78
PDGFRA-208ENST00000509490 PIK3R5Q8WYR1 880 aa10.17□□□□□ -0.78
PDGFRA-208ENST00000509490 HPS3Q969F9 1004 aa10.17□□□□□ -0.78
PDGFRA-208ENST00000509490 NUDT12Q9BQG2 462 aa10.17□□□□□ -0.78
PDGFRA-208ENST00000509490 JMJD4Q9H9V9 463 aa10.17□□□□□ -0.78
PDGFRA-208ENST00000509490 BMP2KQ9NSY1 1161 aaPredicted RBP10.17□□□□□ -0.78
PDGFRA-208ENST00000509490 TTC7AQ9ULT0 858 aaPredicted RBP10.17□□□□□ -0.78
PDGFRA-208ENST00000509490 UBR3Q6ZT12 1888 aa10.17□□□□□ -0.78
PDGFRA-208ENST00000509490 SLC16A3O15427 465 aaKnown RBP10.16□□□□□ -0.78
PDGFRA-208ENST00000509490 MMP14P50281 582 aa10.16□□□□□ -0.78
PDGFRA-208ENST00000509490 MRPL12P52815 198 aaKnown RBP10.16□□□□□ -0.78
PDGFRA-208ENST00000509490 GFPT1Q06210 699 aaPredicted RBP10.16□□□□□ -0.78
PDGFRA-208ENST00000509490 CUL1Q13616 776 aa10.16□□□□□ -0.78
PDGFRA-208ENST00000509490 ECM1Q16610 540 aa10.16□□□□□ -0.78
PDGFRA-208ENST00000509490 IFI16Q16666 785 aaKnown RBP10.16□□□□□ -0.78
PDGFRA-208ENST00000509490 CACNA2D4Q7Z3S7 1137 aa10.16□□□□□ -0.78
PDGFRA-208ENST00000509490 TADA2BQ86TJ2 420 aa10.16□□□□□ -0.78
PDGFRA-208ENST00000509490 RIN2Q8WYP3 895 aaPredicted RBP10.16□□□□□ -0.78
PDGFRA-208ENST00000509490 CUL5Q93034 780 aa10.16□□□□□ -0.78
PDGFRA-208ENST00000509490 EHD4Q9H223 541 aa10.16□□□□□ -0.78
PDGFRA-208ENST00000509490 PANK4Q9NVE7 773 aa10.16□□□□□ -0.78
PDGFRA-208ENST00000509490 SRP68Q9UHB9 627 aaKnown RBP10.16□□□□□ -0.78
PDGFRA-208ENST00000509490 GSPT2Q8IYD1 628 aaKnown RBP10.16□□□□□ -0.78
PDGFRA-208ENST00000509490 C10orf67Q8IYJ2 551 aa10.16□□□□□ -0.78
PDGFRA-208ENST00000509490 RASGEF1CQ8N431 466 aa10.16□□□□□ -0.78
PDGFRA-208ENST00000509490 LRRC57Q8N9N7 239 aa10.16□□□□□ -0.78
PDGFRA-208ENST00000509490 USP38Q8NB14 1042 aa10.16□□□□□ -0.78
PDGFRA-208ENST00000509490 ISCUQ9H1K1 167 aa10.16□□□□□ -0.78
PDGFRA-208ENST00000509490 DDX25Q9UHL0 483 aaKnown RBP10.16□□□□□ -0.78
PDGFRA-208ENST00000509490 RTCBQ9Y3I0 505 aaKnown RBP10.16□□□□□ -0.78
PDGFRA-208ENST00000509490 SIPA1L1O43166 1804 aa10.16□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 79.8 ms