RNA–Protein interactions for RNA: ENST00000507004.1

HMGCS1-203, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 2

Gene HMGCS1, Length 950 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-203ENST00000507004 TRIP12Q14669 1992 aaPredicted RBP16.56■□□□□ 0.24
HMGCS1-203ENST00000507004 GTPBP6O43824 516 aaPredicted RBP16.55■□□□□ 0.24
HMGCS1-203ENST00000507004 HOXC8P31273 242 aa16.55■□□□□ 0.24
HMGCS1-203ENST00000507004 RABGGTBP53611 331 aa16.55■□□□□ 0.24
HMGCS1-203ENST00000507004 EXOSC10Q01780 885 aaKnown RBP16.55■□□□□ 0.24
HMGCS1-203ENST00000507004 RTN1Q16799 776 aa16.55■□□□□ 0.24
HMGCS1-203ENST00000507004 TRIM71Q2Q1W2 868 aaKnown RBP16.55■□□□□ 0.24
HMGCS1-203ENST00000507004 CYFIP1Q7L576 1253 aa16.55■□□□□ 0.24
HMGCS1-203ENST00000507004 ATXN2LQ8WWM7 1075 aaKnown RBP16.55■□□□□ 0.24
HMGCS1-203ENST00000507004 ATP6V0A1Q93050 837 aa16.55■□□□□ 0.24
HMGCS1-203ENST00000507004 SCN5AQ14524 2016 aa16.55■□□□□ 0.24
HMGCS1-203ENST00000507004 RSPH10B2B2RC85 870 aa16.54■□□□□ 0.24
HMGCS1-203ENST00000507004 LGR5O75473 907 aa16.54■□□□□ 0.24
HMGCS1-203ENST00000507004 RSPH10BP0C881 870 aa16.54■□□□□ 0.24
HMGCS1-203ENST00000507004 RXRAP19793 462 aa16.54■□□□□ 0.24
HMGCS1-203ENST00000507004 POU3F3P20264 500 aaPredicted RBP16.54■□□□□ 0.24
HMGCS1-203ENST00000507004 IGFBP4P22692 258 aa16.54■□□□□ 0.24
HMGCS1-203ENST00000507004 FGD1P98174 961 aa16.54■□□□□ 0.24
HMGCS1-203ENST00000507004 MCTP2Q6DN12 878 aa16.54■□□□□ 0.24
HMGCS1-203ENST00000507004 HEATR3Q7Z4Q2 680 aa16.54■□□□□ 0.24
HMGCS1-203ENST00000507004 PPP1R13LQ8WUF5 828 aa16.54■□□□□ 0.24
HMGCS1-203ENST00000507004 COL25A1Q9BXS0 654 aaPredicted RBP16.54■□□□□ 0.24
HMGCS1-203ENST00000507004 NRCAMQ92823 1304 aa16.53■□□□□ 0.24
HMGCS1-203ENST00000507004 EPB41L2O43491 1005 aaKnown RBP16.53■□□□□ 0.24
HMGCS1-203ENST00000507004 TLL1O43897 1013 aa16.53■□□□□ 0.24
HMGCS1-203ENST00000507004 NBNO60934 754 aa16.53■□□□□ 0.24
HMGCS1-203ENST00000507004 CA3P07451 260 aa16.53■□□□□ 0.24
HMGCS1-203ENST00000507004 SMIM10L2AP0DMW4 78 aa16.53■□□□□ 0.24
HMGCS1-203ENST00000507004 SMIM10L2BP0DMW5 78 aa16.53■□□□□ 0.24
HMGCS1-203ENST00000507004 WDR5P61964 334 aaKnown RBP16.53■□□□□ 0.24
HMGCS1-203ENST00000507004 SEMA3FQ13275 785 aa16.53■□□□□ 0.24
HMGCS1-203ENST00000507004 AP3B2Q13367 1082 aa16.53■□□□□ 0.24
HMGCS1-203ENST00000507004 MTMR1Q13613 665 aa16.53■□□□□ 0.24
HMGCS1-203ENST00000507004 TJAP1Q5JTD0 557 aa16.53■□□□□ 0.24
HMGCS1-203ENST00000507004 ZNF618Q5T7W0 954 aa16.53■□□□□ 0.24
HMGCS1-203ENST00000507004 TAF2Q6P1X5 1199 aa16.53■□□□□ 0.24
HMGCS1-203ENST00000507004 SEPT1Q8WYJ6 367 aa16.53■□□□□ 0.24
HMGCS1-203ENST00000507004 GPKOWQ92917 476 aaPredicted RBP eCLIP16.53■□□□□ 0.243e-16■□□□□ 9.9
HMGCS1-203ENST00000507004 ZBED2Q9BTP6 218 aa16.53■□□□□ 0.24
HMGCS1-203ENST00000507004 LRRC2Q9BYS8 371 aa16.53■□□□□ 0.24
HMGCS1-203ENST00000507004 JADE2Q9NQC1 790 aa16.53■□□□□ 0.24
HMGCS1-203ENST00000507004 THEGQ9P2T0 379 aa16.53■□□□□ 0.24
HMGCS1-203ENST00000507004 PCDHA6Q9UN73 950 aa16.53■□□□□ 0.24
HMGCS1-203ENST00000507004 PCDHA8Q9Y5H6 950 aa16.53■□□□□ 0.24
HMGCS1-203ENST00000507004 UBIAD1Q9Y5Z9 338 aa16.53■□□□□ 0.24
HMGCS1-203ENST00000507004 TET1Q8NFU7 2136 aa16.52■□□□□ 0.24
HMGCS1-203ENST00000507004 CUL9Q8IWT3 2517 aa16.52■□□□□ 0.24
HMGCS1-203ENST00000507004 REC8O95072 547 aa16.52■□□□□ 0.24
HMGCS1-203ENST00000507004 THPOP40225 353 aa16.52■□□□□ 0.24
HMGCS1-203ENST00000507004 NAPAP54920 295 aa16.52■□□□□ 0.24
HMGCS1-203ENST00000507004 GPNMBQ14956 572 aa16.52■□□□□ 0.24
HMGCS1-203ENST00000507004 CMTR1Q8N1G2 835 aaKnown RBP16.52■□□□□ 0.24
HMGCS1-203ENST00000507004 CCDC82Q8N4S0 544 aa16.52■□□□□ 0.24
HMGCS1-203ENST00000507004 APBB2Q92870 758 aa16.52■□□□□ 0.24
HMGCS1-203ENST00000507004 CCDC136Q96JN2 1154 aa16.52■□□□□ 0.24
HMGCS1-203ENST00000507004 ZFP91Q96JP5 570 aaPredicted RBP16.52■□□□□ 0.24
HMGCS1-203ENST00000507004 RNPEPQ9H4A4 650 aa16.52■□□□□ 0.24
HMGCS1-203ENST00000507004 RIC8AQ9NPQ8 531 aa16.52■□□□□ 0.24
HMGCS1-203ENST00000507004 ERAP1Q9NZ08 941 aa16.52■□□□□ 0.24
HMGCS1-203ENST00000507004 GBF1Q92538 1859 aa16.52■□□□□ 0.23
HMGCS1-203ENST00000507004 CNTNAP5Q8WYK1 1306 aa16.51■□□□□ 0.23
HMGCS1-203ENST00000507004 GOLGA8AA7E2F4 631 aa16.51■□□□□ 0.23
HMGCS1-203ENST00000507004 GOLGA8BA8MQT2 603 aa16.51■□□□□ 0.23
HMGCS1-203ENST00000507004 SORBS3O60504 671 aa16.51■□□□□ 0.23
HMGCS1-203ENST00000507004 GJB5O95377 273 aa16.51■□□□□ 0.23
HMGCS1-203ENST00000507004 AMHP03971 560 aa16.51■□□□□ 0.23
HMGCS1-203ENST00000507004 KCNA2P16389 499 aa16.51■□□□□ 0.23
HMGCS1-203ENST00000507004 PSMA5P28066 241 aa16.51■□□□□ 0.23
HMGCS1-203ENST00000507004 ADGRE1Q14246 886 aa16.51■□□□□ 0.23
HMGCS1-203ENST00000507004 TRAF7Q6Q0C0 670 aa16.51■□□□□ 0.23
HMGCS1-203ENST00000507004 FAM43BQ6ZT52 329 aaPredicted RBP16.51■□□□□ 0.23
HMGCS1-203ENST00000507004 RPAINQ86UA6 219 aa16.51■□□□□ 0.23
HMGCS1-203ENST00000507004 RSPH3Q86UC2 560 aa16.51■□□□□ 0.23
HMGCS1-203ENST00000507004 FBXL16Q8N461 479 aa16.51■□□□□ 0.23
HMGCS1-203ENST00000507004 CCDC12Q8WUD4 166 aaPredicted RBP16.51■□□□□ 0.23
HMGCS1-203ENST00000507004 SEPT8Q92599 483 aa16.51■□□□□ 0.23
HMGCS1-203ENST00000507004 KCNB2Q92953 911 aa16.51■□□□□ 0.23
HMGCS1-203ENST00000507004 RAD9AQ99638 391 aa16.51■□□□□ 0.23
HMGCS1-203ENST00000507004 SMARCAD1Q9H4L7 1026 aa16.51■□□□□ 0.23
HMGCS1-203ENST00000507004 LAMA2P24043 3122 aaKnown RBP16.5■□□□□ 0.23
HMGCS1-203ENST00000507004 KLF18A0A0U1RQI7 1052 aa16.5■□□□□ 0.23
HMGCS1-203ENST00000507004 MYOGP15173 224 aa16.5■□□□□ 0.23
HMGCS1-203ENST00000507004 ITGB5P18084 799 aa16.5■□□□□ 0.23
HMGCS1-203ENST00000507004 TCF7P36402 384 aaPredicted RBP16.5■□□□□ 0.23
HMGCS1-203ENST00000507004 ADCY7P51828 1080 aa16.5■□□□□ 0.23
HMGCS1-203ENST00000507004 ZNF200P98182 395 aaPredicted RBP16.5■□□□□ 0.23
HMGCS1-203ENST00000507004 TAP1Q03518 808 aa16.5■□□□□ 0.23
HMGCS1-203ENST00000507004 AAK1Q2M2I8 961 aa16.5■□□□□ 0.23
HMGCS1-203ENST00000507004 UTP14CQ5TAP6 766 aaKnown RBP16.5■□□□□ 0.23
HMGCS1-203ENST00000507004 SDF4Q9BRK5 362 aa16.5■□□□□ 0.23
HMGCS1-203ENST00000507004 BARHL2Q9NY43 387 aa16.5■□□□□ 0.23
HMGCS1-203ENST00000507004 LMCD1Q9NZU5 365 aa16.5■□□□□ 0.23
HMGCS1-203ENST00000507004 NFASCO94856 1347 aa16.49■□□□□ 0.23
HMGCS1-203ENST00000507004 RRN3P2A6NIE6 340 aa16.49■□□□□ 0.23
HMGCS1-203ENST00000507004 TREHO43280 583 aa16.49■□□□□ 0.23
HMGCS1-203ENST00000507004 HSPA4P34932 840 aa16.49■□□□□ 0.23
HMGCS1-203ENST00000507004 UBE2SQ16763 222 aa16.49■□□□□ 0.23
HMGCS1-203ENST00000507004 PLEKHG4Q58EX7 1191 aa16.49■□□□□ 0.23
HMGCS1-203ENST00000507004 FAM26DQ5JW98 314 aa16.49■□□□□ 0.23
HMGCS1-203ENST00000507004 WWC2Q6AWC2 1192 aa16.49■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 8.9 ms