RNA–Protein interactions for RNA: ENST00000495090.6

SYNE1-230, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 1,907 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-230ENST00000495090 CEP57Q86XR8 500 aa10.63□□□□□ -0.71
SYNE1-230ENST00000495090 DNAJC10Q8IXB1 793 aa10.63□□□□□ -0.71
SYNE1-230ENST00000495090 HVCN1Q96D96 273 aa10.63□□□□□ -0.71
SYNE1-230ENST00000495090 EEF2KMTQ96G04 330 aa10.63□□□□□ -0.71
SYNE1-230ENST00000495090 SLITRK6Q9H5Y7 841 aa10.63□□□□□ -0.71
SYNE1-230ENST00000495090 POLD4Q9HCU8 107 aa10.63□□□□□ -0.71
SYNE1-230ENST00000495090 A0A1B0GUL6 1792 aa10.63□□□□□ -0.71
SYNE1-230ENST00000495090 NUP98P52948 1817 aa10.62□□□□□ -0.71
SYNE1-230ENST00000495090 FTCDO95954 541 aa10.62□□□□□ -0.71
SYNE1-230ENST00000495090 VEGFAP15692 232 aaPredicted RBP10.62□□□□□ -0.71
SYNE1-230ENST00000495090 KCNMA1Q12791 1236 aa10.62□□□□□ -0.71
SYNE1-230ENST00000495090 ITIH4Q14624 930 aa10.62□□□□□ -0.71
SYNE1-230ENST00000495090 RPS6KA1Q15418 735 aa10.62□□□□□ -0.71
SYNE1-230ENST00000495090 ANKS1AQ92625 1134 aa10.62□□□□□ -0.71
SYNE1-230ENST00000495090 TLCD1Q96CP7 247 aa10.62□□□□□ -0.71
SYNE1-230ENST00000495090 TSG101Q99816 390 aa10.62□□□□□ -0.71
SYNE1-230ENST00000495090 EBF2Q9HAK2 575 aa10.62□□□□□ -0.71
SYNE1-230ENST00000495090 TMOD3Q9NYL9 352 aa10.62□□□□□ -0.71
SYNE1-230ENST00000495090 AIPL1Q9NZN9 384 aa10.62□□□□□ -0.71
SYNE1-230ENST00000495090 DCCP43146 1447 aa10.62□□□□□ -0.71
SYNE1-230ENST00000495090 TNKS1BP1Q9C0C2 1729 aaKnown RBP10.62□□□□□ -0.71
SYNE1-230ENST00000495090 CFAP73A6NFT4 308 aa10.62□□□□□ -0.71
SYNE1-230ENST00000495090 SMIM22K7EJ46 135 aa10.62□□□□□ -0.71
SYNE1-230ENST00000495090 ASAP2O43150 1006 aa10.62□□□□□ -0.71
SYNE1-230ENST00000495090 TLR2O60603 784 aa10.62□□□□□ -0.71
SYNE1-230ENST00000495090 ATP6V1G2O95670 118 aa10.62□□□□□ -0.71
SYNE1-230ENST00000495090 ANXA13P27216 316 aa10.62□□□□□ -0.71
SYNE1-230ENST00000495090 CLNS1AP54105 237 aaKnown RBP10.62□□□□□ -0.71
SYNE1-230ENST00000495090 IRX1P78414 480 aaPredicted RBP10.62□□□□□ -0.71
SYNE1-230ENST00000495090 ELF3P78545 371 aaPredicted RBP10.62□□□□□ -0.71
SYNE1-230ENST00000495090 EHHADHQ08426 723 aa10.62□□□□□ -0.71
SYNE1-230ENST00000495090 TRADDQ15628 312 aa10.62□□□□□ -0.71
SYNE1-230ENST00000495090 INF2Q27J81 1249 aa10.62□□□□□ -0.71
SYNE1-230ENST00000495090 FAM83BQ5T0W9 1011 aa10.62□□□□□ -0.71
SYNE1-230ENST00000495090 ERMARDQ5T6L9 678 aa10.62□□□□□ -0.71
SYNE1-230ENST00000495090 MSL1Q68DK7 614 aa10.62□□□□□ -0.71
SYNE1-230ENST00000495090 SV2BQ7L1I2 683 aa10.62□□□□□ -0.71
SYNE1-230ENST00000495090 KRT25Q7Z3Z0 450 aa10.62□□□□□ -0.71
SYNE1-230ENST00000495090 ZNF34Q8IZ26 560 aa10.62□□□□□ -0.71
SYNE1-230ENST00000495090 ANKS4BQ8N8V4 417 aa10.62□□□□□ -0.71
SYNE1-230ENST00000495090 CUL5Q93034 780 aa10.62□□□□□ -0.71
SYNE1-230ENST00000495090 CHMP6Q96FZ7 201 aa10.62□□□□□ -0.71
SYNE1-230ENST00000495090 CALML4Q96GE6 196 aa10.62□□□□□ -0.71
SYNE1-230ENST00000495090 RSRC1Q96IZ7 334 aaKnown RBP10.62□□□□□ -0.71
SYNE1-230ENST00000495090 SCLT1Q96NL6 688 aa10.62□□□□□ -0.71
SYNE1-230ENST00000495090 PSMD1Q99460 953 aa10.62□□□□□ -0.71
SYNE1-230ENST00000495090 PLIN2Q99541 437 aa10.62□□□□□ -0.71
SYNE1-230ENST00000495090 TRIM6Q9C030 488 aaPredicted RBP10.62□□□□□ -0.71
SYNE1-230ENST00000495090 LRRC27Q9C0I9 530 aa10.62□□□□□ -0.71
SYNE1-230ENST00000495090 BARHL2Q9NY43 387 aa10.62□□□□□ -0.71
SYNE1-230ENST00000495090 SLC12A4Q9UP95 1085 aa10.62□□□□□ -0.71
SYNE1-230ENST00000495090 BAZ2AQ9UIF9 1905 aaKnown RBP10.62□□□□□ -0.71
SYNE1-230ENST00000495090 ATAD5Q96QE3 1844 aa10.62□□□□□ -0.71
SYNE1-230ENST00000495090 CCT8L1PA6NM43 557 aa10.61□□□□□ -0.71
SYNE1-230ENST00000495090 PGRMC1O00264 195 aaKnown RBP10.61□□□□□ -0.71
SYNE1-230ENST00000495090 NOL4O94818 638 aa10.61□□□□□ -0.71
SYNE1-230ENST00000495090 TRIM37O94972 964 aa10.61□□□□□ -0.71
SYNE1-230ENST00000495090 KIF4AO95239 1232 aa10.61□□□□□ -0.71
SYNE1-230ENST00000495090 GNA14O95837 355 aa10.61□□□□□ -0.71
SYNE1-230ENST00000495090 MYCNP04198 464 aaPredicted RBP10.61□□□□□ -0.71
SYNE1-230ENST00000495090 IL2RBP14784 551 aa10.61□□□□□ -0.71
SYNE1-230ENST00000495090 MARSP56192 900 aaKnown RBP10.61□□□□□ -0.71
SYNE1-230ENST00000495090 GRM4Q14833 912 aa10.61□□□□□ -0.71
SYNE1-230ENST00000495090 KIAA0753Q2KHM9 967 aa10.61□□□□□ -0.71
SYNE1-230ENST00000495090 SBK1Q52WX2 424 aa10.61□□□□□ -0.71
SYNE1-230ENST00000495090 ODF2Q5BJF6 829 aa10.61□□□□□ -0.71
SYNE1-230ENST00000495090 TMC3Q7Z5M5 1100 aa10.61□□□□□ -0.71
SYNE1-230ENST00000495090 CPLX4Q7Z7G2 160 aa10.61□□□□□ -0.71
SYNE1-230ENST00000495090 DGKHQ86XP1 1220 aa10.61□□□□□ -0.71
SYNE1-230ENST00000495090 KLHL7Q8IXQ5 586 aa10.61□□□□□ -0.71
SYNE1-230ENST00000495090 RASGEF1CQ8N431 466 aa10.61□□□□□ -0.71
SYNE1-230ENST00000495090 CCDC197Q8NCU1 140 aa10.61□□□□□ -0.71
SYNE1-230ENST00000495090 RASGRP4Q8TDF6 673 aa10.61□□□□□ -0.71
SYNE1-230ENST00000495090 CARD10Q9BWT7 1032 aa10.61□□□□□ -0.71
SYNE1-230ENST00000495090 FAM129AQ9BZQ8 928 aa10.61□□□□□ -0.71
SYNE1-230ENST00000495090 SLC39A2Q9NP94 309 aa10.61□□□□□ -0.71
SYNE1-230ENST00000495090 FAM114A2Q9NRY5 505 aa10.61□□□□□ -0.71
SYNE1-230ENST00000495090 CNOT8Q9UFF9 292 aaKnown RBP10.61□□□□□ -0.71
SYNE1-230ENST00000495090 FBXL5Q9UKA1 691 aa10.61□□□□□ -0.71
SYNE1-230ENST00000495090 EPB41L3Q9Y2J2 1087 aaPredicted RBP10.61□□□□□ -0.71
SYNE1-230ENST00000495090 CYP2D7A0A087X1C5 515 aa10.6□□□□□ -0.71
SYNE1-230ENST00000495090 USP17L12C9JPN9 530 aa10.6□□□□□ -0.71
SYNE1-230ENST00000495090 USP17L21D6R901 530 aa10.6□□□□□ -0.71
SYNE1-230ENST00000495090 STXBP3O00186 592 aa10.6□□□□□ -0.71
SYNE1-230ENST00000495090 ZBTB48P10074 688 aaPredicted RBP10.6□□□□□ -0.71
SYNE1-230ENST00000495090 TMOD1P28289 359 aa10.6□□□□□ -0.71
SYNE1-230ENST00000495090 ATP2B2Q01814 1243 aa10.6□□□□□ -0.71
SYNE1-230ENST00000495090 ZKSCAN8Q15776 578 aaPredicted RBP10.6□□□□□ -0.71
SYNE1-230ENST00000495090 LRCH2Q5VUJ6 765 aa10.6□□□□□ -0.71
SYNE1-230ENST00000495090 TMC4Q7Z404 712 aa10.6□□□□□ -0.71
SYNE1-230ENST00000495090 HOOK3Q86VS8 718 aa10.6□□□□□ -0.71
SYNE1-230ENST00000495090 GPKOWQ92917 476 aaPredicted RBP eCLIP10.6□□□□□ -0.71
SYNE1-230ENST00000495090 CEP63Q96MT8 703 aa10.6□□□□□ -0.71
SYNE1-230ENST00000495090 XPO6Q96QU8 1125 aaKnown RBP10.6□□□□□ -0.71
SYNE1-230ENST00000495090 BUD13Q9BRD0 619 aaKnown RBP eCLIP10.6□□□□□ -0.71
SYNE1-230ENST00000495090 MMTAG2Q9BU76 263 aaKnown RBP10.6□□□□□ -0.71
SYNE1-230ENST00000495090 CCDC134Q9H6E4 229 aa10.6□□□□□ -0.71
SYNE1-230ENST00000495090 NOD2Q9HC29 1040 aa10.6□□□□□ -0.71
SYNE1-230ENST00000495090 ATP8A2Q9NTI2 1148 aa10.6□□□□□ -0.71
SYNE1-230ENST00000495090 ARPP21Q9UBL0 812 aaPredicted RBP10.6□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 70.8 ms