RNA–Protein interactions for RNA: ENST00000494654.1

MDC1-208, Transcript of mediator of DNA damage checkpoint 1, human

TSL 3

Gene MDC1, Length 148 nt, Biotype processed transcript, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MDC1-208	ENST00000494654	ATP1A1	P05023	1023 aa	Known RBP	3	□□□□□ -1.93
MDC1-208	ENST00000494654	UBTFL1	P0CB47	393 aa	Predicted RBP	3	□□□□□ -1.93
MDC1-208	ENST00000494654	IDO1	P14902	403 aa		3	□□□□□ -1.93
MDC1-208	ENST00000494654	NQO1	P15559	274 aa	Known RBP	3	□□□□□ -1.93
MDC1-208	ENST00000494654	ATP2A2	P16615	1042 aa	Known RBP	3	□□□□□ -1.93
MDC1-208	ENST00000494654	ATF3	P18847	181 aa		3	□□□□□ -1.93
MDC1-208	ENST00000494654	ATP6V1C1	P21283	382 aa		3	□□□□□ -1.93
MDC1-208	ENST00000494654	SP100	P23497	879 aa	Predicted RBP	3	□□□□□ -1.93
MDC1-208	ENST00000494654	ERCC5	P28715	1186 aa	Predicted RBP	3	□□□□□ -1.93
MDC1-208	ENST00000494654	KIF5B	P33176	963 aa		3	□□□□□ -1.93
MDC1-208	ENST00000494654	HSPA9	P38646	679 aa	Known RBP	3	□□□□□ -1.93
MDC1-208	ENST00000494654	SKIV2L2	P42285	1042 aa	Known RBP	3	□□□□□ -1.93
MDC1-208	ENST00000494654	CTSO	P43234	321 aa	Predicted RBP	3	□□□□□ -1.93
MDC1-208	ENST00000494654	SYK	P43405	635 aa		3	□□□□□ -1.93
MDC1-208	ENST00000494654	VEGFB	P49765	207 aa		3	□□□□□ -1.93
MDC1-208	ENST00000494654	SMCP	P49901	116 aa	Predicted RBP	3	□□□□□ -1.93
MDC1-208	ENST00000494654	ATP1A2	P50993	1020 aa		3	□□□□□ -1.93
MDC1-208	ENST00000494654	ADK	P55263	362 aa	Known RBP	3	□□□□□ -1.93
MDC1-208	ENST00000494654	PHEX	P78562	749 aa		3	□□□□□ -1.93
MDC1-208	ENST00000494654	LACTB	P83111	547 aa	Predicted RBP	3	□□□□□ -1.93
MDC1-208	ENST00000494654	MXRA7	P84157	204 aa		3	□□□□□ -1.93
MDC1-208	ENST00000494654	SULT2A1	Q06520	285 aa		3	□□□□□ -1.93
MDC1-208	ENST00000494654	SPAG1	Q07617	926 aa		3	□□□□□ -1.93
MDC1-208	ENST00000494654	C2orf54	Q08AI8	447 aa		3	□□□□□ -1.93
MDC1-208	ENST00000494654	MAP3K12	Q12852	859 aa		3	□□□□□ -1.93
MDC1-208	ENST00000494654	STK3	Q13188	491 aa		3	□□□□□ -1.93
MDC1-208	ENST00000494654	NMI	Q13287	307 aa	Predicted RBP	3	□□□□□ -1.93
MDC1-208	ENST00000494654	BIRC3	Q13489	604 aa		3	□□□□□ -1.93
MDC1-208	ENST00000494654	NR1I3	Q14994	352 aa		3	□□□□□ -1.93
MDC1-208	ENST00000494654	LAPTM4A	Q15012	233 aa		3	□□□□□ -1.93
MDC1-208	ENST00000494654	RRS1	Q15050	365 aa	Known RBP	3	□□□□□ -1.93
MDC1-208	ENST00000494654	PPP1R7	Q15435	360 aa		3	□□□□□ -1.93
MDC1-208	ENST00000494654	SF3A1	Q15459	793 aa	Known RBP	3	□□□□□ -1.93
MDC1-208	ENST00000494654	TAF11	Q15544	211 aa		3	□□□□□ -1.93
MDC1-208	ENST00000494654	DBN1	Q16643	649 aa		3	□□□□□ -1.93
MDC1-208	ENST00000494654	SLC4A8	Q2Y0W8	1093 aa		3	□□□□□ -1.93
MDC1-208	ENST00000494654	KBTBD12	Q3ZCT8	623 aa		3	□□□□□ -1.93
MDC1-208	ENST00000494654	PABPC1L	Q4VXU2	614 aa	Known RBP	3	□□□□□ -1.93
MDC1-208	ENST00000494654	ANKRD20A2	Q5SQ80	823 aa		3	□□□□□ -1.93
MDC1-208	ENST00000494654	ANKRD20A1	Q5TYW2	823 aa		3	□□□□□ -1.93
MDC1-208	ENST00000494654	GKAP1	Q5VSY0	366 aa	Predicted RBP	3	□□□□□ -1.93
MDC1-208	ENST00000494654	ANKRD20A3	Q5VUR7	823 aa		3	□□□□□ -1.93
MDC1-208	ENST00000494654	CDKAL1	Q5VV42	579 aa		3	□□□□□ -1.93
MDC1-208	ENST00000494654	RESP18	Q5W5W9	173 aa		3	□□□□□ -1.93
MDC1-208	ENST00000494654	HIBCH	Q6NVY1	386 aa	Predicted RBP	3	□□□□□ -1.93
MDC1-208	ENST00000494654	IRGC	Q6NXR0	463 aa		3	□□□□□ -1.93
MDC1-208	ENST00000494654	C8orf74	Q6P047	294 aa		3	□□□□□ -1.93
MDC1-208	ENST00000494654		Q6ZUG5	572 aa		3	□□□□□ -1.93
MDC1-208	ENST00000494654	BRINP3	Q76B58	766 aa		3	□□□□□ -1.93
MDC1-208	ENST00000494654	DDX46	Q7L014	1031 aa	Known RBP	3	□□□□□ -1.93
MDC1-208	ENST00000494654	ARMCX6	Q7L4S7	300 aa		3	□□□□□ -1.93
MDC1-208	ENST00000494654	APTX	Q7Z2E3	356 aa	Known RBP	3	□□□□□ -1.93
MDC1-208	ENST00000494654	METTL16	Q86W50	562 aa	Known RBP	3	□□□□□ -1.93
MDC1-208	ENST00000494654	PPFIBP1	Q86W92	1011 aa		3	□□□□□ -1.93
MDC1-208	ENST00000494654	KIAA0825	Q8IV33	1275 aa		3	□□□□□ -1.93
MDC1-208	ENST00000494654	FAM114A1	Q8IWE2	563 aa		3	□□□□□ -1.93
MDC1-208	ENST00000494654	KIRREL3	Q8IZU9	778 aa		3	□□□□□ -1.93
MDC1-208	ENST00000494654	CRIPAK	Q8N1N5	446 aa		3	□□□□□ -1.93
MDC1-208	ENST00000494654	LRRC43	Q8N309	656 aa		3	□□□□□ -1.93
MDC1-208	ENST00000494654	SH2D3C	Q8N5H7	860 aa		3	□□□□□ -1.93
MDC1-208	ENST00000494654	MEIOB	Q8N635	442 aa		3	□□□□□ -1.93
MDC1-208	ENST00000494654	EIF1AD	Q8N9N8	165 aa	Known RBP	3	□□□□□ -1.93
MDC1-208	ENST00000494654	CNBD1	Q8NA66	436 aa		3	□□□□□ -1.93
MDC1-208	ENST00000494654	SMYD1	Q8NB12	490 aa		3	□□□□□ -1.93
MDC1-208	ENST00000494654	CCDC197	Q8NCU1	140 aa		3	□□□□□ -1.93
MDC1-208	ENST00000494654	CAGE1	Q8TC20	777 aa		3	□□□□□ -1.93
MDC1-208	ENST00000494654	FBF1	Q8TES7	1133 aa		3	□□□□□ -1.93
MDC1-208	ENST00000494654	SH3TC2	Q8TF17	1288 aa		3	□□□□□ -1.93
MDC1-208	ENST00000494654	AGAP11	Q8TF27	550 aa		3	□□□□□ -1.93
MDC1-208	ENST00000494654	WHAMM	Q8TF30	809 aa		3	□□□□□ -1.93
MDC1-208	ENST00000494654	HDAC7	Q8WUI4	952 aa		3	□□□□□ -1.93
MDC1-208	ENST00000494654	ATRIP	Q8WXE1	791 aa		3	□□□□□ -1.93
MDC1-208	ENST00000494654	NCSTN	Q92542	709 aa		3	□□□□□ -1.93
MDC1-208	ENST00000494654	KIFAP3	Q92845	792 aa		3	□□□□□ -1.93
MDC1-208	ENST00000494654	GLMN	Q92990	594 aa		3	□□□□□ -1.93
MDC1-208	ENST00000494654	OPTN	Q96CV9	577 aa		3	□□□□□ -1.93
MDC1-208	ENST00000494654	IQCD	Q96DY2	449 aa		3	□□□□□ -1.93
MDC1-208	ENST00000494654	NAF1	Q96HR8	494 aa	Known RBP	3	□□□□□ -1.93
MDC1-208	ENST00000494654	SEC16B	Q96JE7	1060 aa		3	□□□□□ -1.93
MDC1-208	ENST00000494654	C8orf76	Q96K31	380 aa		3	□□□□□ -1.93
MDC1-208	ENST00000494654	AGAP3	Q96P47	875 aa		3	□□□□□ -1.93
MDC1-208	ENST00000494654	IWS1	Q96ST2	819 aa		3	□□□□□ -1.93
MDC1-208	ENST00000494654	FAM129A	Q9BZQ8	928 aa		3	□□□□□ -1.93
MDC1-208	ENST00000494654	KRT23	Q9C075	422 aa		3	□□□□□ -1.93
MDC1-208	ENST00000494654	FAM192A	Q9GZU8	254 aa		3	□□□□□ -1.93
MDC1-208	ENST00000494654	NSRP1	Q9H0G5	558 aa	Known RBP	3	□□□□□ -1.93
MDC1-208	ENST00000494654	VCX	Q9H320	206 aa		3	□□□□□ -1.93
MDC1-208	ENST00000494654	VCX3B	Q9H321	246 aa		3	□□□□□ -1.93
MDC1-208	ENST00000494654	RABEP2	Q9H5N1	569 aa		3	□□□□□ -1.93
MDC1-208	ENST00000494654	CNOT10	Q9H9A5	744 aa	Known RBP	3	□□□□□ -1.93
MDC1-208	ENST00000494654	TMBIM4	Q9HC24	238 aa		3	□□□□□ -1.93
MDC1-208	ENST00000494654	VCX3A	Q9NNX9	186 aa		3	□□□□□ -1.93
MDC1-208	ENST00000494654	IL1RAPL2	Q9NP60	686 aa		3	□□□□□ -1.93
MDC1-208	ENST00000494654	DMAP1	Q9NPF5	467 aa	Predicted RBP	3	□□□□□ -1.93
MDC1-208	ENST00000494654	PLCB1	Q9NQ66	1216 aa		3	□□□□□ -1.93
MDC1-208	ENST00000494654	GDF3	Q9NR23	364 aa		3	□□□□□ -1.93
MDC1-208	ENST00000494654	ECHDC1	Q9NTX5	307 aa		3	□□□□□ -1.93
MDC1-208	ENST00000494654	SDAD1	Q9NVU7	687 aa	Known RBP eCLIP	3	□□□□□ -1.93
MDC1-208	ENST00000494654	SWAP70	Q9UH65	585 aa		3	□□□□□ -1.93
MDC1-208	ENST00000494654	BAIAP2L1	Q9UHR4	511 aa		3	□□□□□ -1.93

Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms