RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 RCAN1P53805 252 aa17.81■□□□□ 0.44
CCDC88B-209ENST00000494080 SEPT2Q15019 361 aa17.81■□□□□ 0.44
CCDC88B-209ENST00000494080 CCDC127Q96BQ5 260 aa17.81■□□□□ 0.44
CCDC88B-209ENST00000494080 RWDD2AQ9UIY3 292 aa17.81■□□□□ 0.44
CCDC88B-209ENST00000494080 CCDC160A6NGH7 325 aa17.81■□□□□ 0.44
CCDC88B-209ENST00000494080 ORC4O43929 436 aa17.81■□□□□ 0.44
CCDC88B-209ENST00000494080 MOCS3O95396 460 aa17.81■□□□□ 0.44
CCDC88B-209ENST00000494080 GCFC2P16383 781 aaKnown RBP17.81■□□□□ 0.44
CCDC88B-209ENST00000494080 STAT1P42224 750 aa17.81■□□□□ 0.44
CCDC88B-209ENST00000494080 DENND2CQ68D51 928 aa17.81■□□□□ 0.44
CCDC88B-209ENST00000494080 RBM43Q6ZSC3 357 aaKnown RBP17.81■□□□□ 0.44
CCDC88B-209ENST00000494080 ZNF579Q8NAF0 562 aaKnown RBP17.81■□□□□ 0.44
CCDC88B-209ENST00000494080 U2AF1L4Q8WU68 220 aaKnown RBP17.81■□□□□ 0.44
CCDC88B-209ENST00000494080 TRIM49BA6NDI0 452 aa17.8■□□□□ 0.44
CCDC88B-209ENST00000494080 K7ENM7 598 aa17.8■□□□□ 0.44
CCDC88B-209ENST00000494080 IFNAR2P48551 515 aa17.8■□□□□ 0.44
CCDC88B-209ENST00000494080 CORO7P57737 925 aa17.8■□□□□ 0.44
CCDC88B-209ENST00000494080 MXRA7P84157 204 aa17.8■□□□□ 0.44
CCDC88B-209ENST00000494080 USP49Q70CQ1 688 aa17.8■□□□□ 0.44
CCDC88B-209ENST00000494080 CLEC10AQ8IUN9 316 aa17.8■□□□□ 0.44
CCDC88B-209ENST00000494080 NFU1Q9UMS0 254 aa17.8■□□□□ 0.44
CCDC88B-209ENST00000494080 HPS5Q9UPZ3 1129 aa17.8■□□□□ 0.44
CCDC88B-209ENST00000494080 CCNE1P24864 410 aa17.8■□□□□ 0.44
CCDC88B-209ENST00000494080 STAT2P52630 851 aa17.8■□□□□ 0.44
CCDC88B-209ENST00000494080 EMBQ6PCB8 327 aa17.8■□□□□ 0.44
CCDC88B-209ENST00000494080 ENGASEQ8NFI3 743 aa17.8■□□□□ 0.44
CCDC88B-209ENST00000494080 NAP1L3Q99457 506 aaPredicted RBP17.8■□□□□ 0.44
CCDC88B-209ENST00000494080 TEKT3Q9BXF9 490 aa17.8■□□□□ 0.44
CCDC88B-209ENST00000494080 SPATA31A5Q5VU36 1347 aa17.8■□□□□ 0.44
CCDC88B-209ENST00000494080 SPATA31A7Q8IWB4 1347 aa17.8■□□□□ 0.44
CCDC88B-209ENST00000494080 GBP1P32455 592 aa17.8■□□□□ 0.44
CCDC88B-209ENST00000494080 FKBP3Q00688 224 aaKnown RBP17.8■□□□□ 0.44
CCDC88B-209ENST00000494080 SYDE2Q5VT97 1194 aa17.8■□□□□ 0.44
CCDC88B-209ENST00000494080 NUCKS1Q9H1E3 243 aaKnown RBP17.8■□□□□ 0.44
CCDC88B-209ENST00000494080 SERPINA10Q9UK55 444 aa17.8■□□□□ 0.44
CCDC88B-209ENST00000494080 USP17L10C9JJH3 530 aa17.79■□□□□ 0.44
CCDC88B-209ENST00000494080 DKC1O60832 514 aaKnown RBP eCLIP17.79■□□□□ 0.44
CCDC88B-209ENST00000494080 HIP1RO75146 1068 aa17.79■□□□□ 0.44
CCDC88B-209ENST00000494080 TSNAXIP1Q2TAA8 658 aa17.79■□□□□ 0.44
CCDC88B-209ENST00000494080 FOXP4Q8IVH2 680 aaPredicted RBP17.79■□□□□ 0.44
CCDC88B-209ENST00000494080 ANKRD42Q8N9B4 389 aa17.79■□□□□ 0.44
CCDC88B-209ENST00000494080 NHEJ1Q9H9Q4 299 aaPredicted RBP17.79■□□□□ 0.44
CCDC88B-209ENST00000494080 STK17AQ9UEE5 414 aa17.79■□□□□ 0.44
CCDC88B-209ENST00000494080 ATF5Q9Y2D1 282 aaPredicted RBP17.79■□□□□ 0.44
CCDC88B-209ENST00000494080 TAOK1Q7L7X3 1001 aa17.79■□□□□ 0.44
CCDC88B-209ENST00000494080 TC2NQ8N9U0 490 aa17.79■□□□□ 0.44
CCDC88B-209ENST00000494080 CCDC197Q8NCU1 140 aa17.79■□□□□ 0.44
CCDC88B-209ENST00000494080 KCNB2Q92953 911 aa17.79■□□□□ 0.44
CCDC88B-209ENST00000494080 POLD4Q9HCU8 107 aa17.79■□□□□ 0.44
CCDC88B-209ENST00000494080 MTUS1Q9ULD2 1270 aa17.79■□□□□ 0.44
CCDC88B-209ENST00000494080 SIGLEC1Q9BZZ2 1709 aa17.79■□□□□ 0.44
CCDC88B-209ENST00000494080 H3BQF6 201 aa17.79■□□□□ 0.44
CCDC88B-209ENST00000494080 AKR1B1P15121 316 aa17.79■□□□□ 0.44
CCDC88B-209ENST00000494080 CCDC38Q502W7 563 aa17.79■□□□□ 0.44
CCDC88B-209ENST00000494080 PODNQ7Z5L7 613 aa17.79■□□□□ 0.44
CCDC88B-209ENST00000494080 HOOK2Q96ED9 719 aa17.79■□□□□ 0.44
CCDC88B-209ENST00000494080 ANO3Q9BYT9 981 aa17.79■□□□□ 0.44
CCDC88B-209ENST00000494080 CLIC2O15247 247 aa17.79■□□□□ 0.44
CCDC88B-209ENST00000494080 GRM4Q14833 912 aa17.79■□□□□ 0.44
CCDC88B-209ENST00000494080 ZNF577Q9BSK1 485 aa17.79■□□□□ 0.44
CCDC88B-209ENST00000494080 ARHGAP23Q9P227 1491 aa17.78■□□□□ 0.44
CCDC88B-209ENST00000494080 BCRP11274 1271 aa17.78■□□□□ 0.44
CCDC88B-209ENST00000494080 AOC3Q16853 763 aa17.78■□□□□ 0.44
CCDC88B-209ENST00000494080 METTL16Q86W50 562 aaKnown RBP17.78■□□□□ 0.44
CCDC88B-209ENST00000494080 TBC1D16Q8TBP0 767 aa17.78■□□□□ 0.44
CCDC88B-209ENST00000494080 KIFAP3Q92845 792 aa17.78■□□□□ 0.44
CCDC88B-209ENST00000494080 SH3GLB2Q9NR46 395 aa17.78■□□□□ 0.44
CCDC88B-209ENST00000494080 SLIT1O75093 1534 aa17.78■□□□□ 0.44
CCDC88B-209ENST00000494080 hCG_1984214I3L0E3 225 aa17.78■□□□□ 0.44
CCDC88B-209ENST00000494080 CCDC93Q567U6 631 aa17.78■□□□□ 0.44
CCDC88B-209ENST00000494080 ZNF713Q8N859 430 aaPredicted RBP17.78■□□□□ 0.44
CCDC88B-209ENST00000494080 NOA1Q8NC60 698 aaKnown RBP17.78■□□□□ 0.44
CCDC88B-209ENST00000494080 GLG1Q92896 1179 aa17.78■□□□□ 0.44
CCDC88B-209ENST00000494080 ACTR5Q9H9F9 607 aaPredicted RBP17.78■□□□□ 0.44
CCDC88B-209ENST00000494080 CTNND1O60716 968 aaKnown RBP17.78■□□□□ 0.44
CCDC88B-209ENST00000494080 TNNI1P19237 187 aa17.78■□□□□ 0.44
CCDC88B-209ENST00000494080 RC3H1Q5TC82 1133 aaKnown RBP17.78■□□□□ 0.44
CCDC88B-209ENST00000494080 NEDD1Q8NHV4 660 aa17.78■□□□□ 0.44
CCDC88B-209ENST00000494080 SEL1L2Q5TEA6 688 aa17.77■□□□□ 0.44
CCDC88B-209ENST00000494080 DCAF15Q66K64 600 aa17.77■□□□□ 0.44
CCDC88B-209ENST00000494080 ADAT2Q7Z6V5 191 aaKnown RBP17.77■□□□□ 0.44
CCDC88B-209ENST00000494080 TTLL6Q8N841 843 aa17.77■□□□□ 0.44
CCDC88B-209ENST00000494080 IQCDQ96DY2 449 aa17.77■□□□□ 0.44
CCDC88B-209ENST00000494080 PLA2G4BP0C869 781 aa17.77■□□□□ 0.44
CCDC88B-209ENST00000494080 RAD9BQ6WBX8 426 aa17.77■□□□□ 0.44
CCDC88B-209ENST00000494080 STMN2Q93045 179 aa17.77■□□□□ 0.44
CCDC88B-209ENST00000494080 AZI2Q9H6S1 392 aa17.77■□□□□ 0.44
CCDC88B-209ENST00000494080 BARHL2Q9NY43 387 aa17.77■□□□□ 0.44
CCDC88B-209ENST00000494080 LCMT1Q9UIC8 334 aa17.77■□□□□ 0.44
CCDC88B-209ENST00000494080 JCADQ9P266 1359 aa17.77■□□□□ 0.44
CCDC88B-209ENST00000494080 EXOC3L4Q17RC7 722 aa17.77■□□□□ 0.44
CCDC88B-209ENST00000494080 TMEM179Q6ZVK1 233 aa17.77■□□□□ 0.44
CCDC88B-209ENST00000494080 FBXO33Q7Z6M2 555 aa17.77■□□□□ 0.44
CCDC88B-209ENST00000494080 ANKRD35Q8N283 1001 aa17.77■□□□□ 0.44
CCDC88B-209ENST00000494080 PLCB1Q9NQ66 1216 aa17.77■□□□□ 0.44
CCDC88B-209ENST00000494080 ZBED6P86452 979 aa17.77■□□□□ 0.43
CCDC88B-209ENST00000494080 TCP11X2Q5H9J9 407 aa17.77■□□□□ 0.43
CCDC88B-209ENST00000494080 NAA35Q5VZE5 725 aa17.77■□□□□ 0.43
CCDC88B-209ENST00000494080 ARHGEF2Q92974 986 aaKnown RBP17.77■□□□□ 0.43
CCDC88B-209ENST00000494080 PNKPQ96T60 521 aa17.77■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms