RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 C5P01031 1676 aa11.8□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 ZMYND10O75800 440 aa11.8□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 CD44P16070 742 aaKnown RBP11.8□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 HMGB2P26583 209 aaKnown RBP11.8□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 COPB1P53618 953 aaKnown RBP11.8□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 RHBDL3P58872 404 aa11.8□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 ATP2C1P98194 919 aaPredicted RBP11.8□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 ZNF543Q08ER8 600 aa11.8□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 DPH6Q7L8W6 267 aa11.8□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 CYP2W1Q8TAV3 490 aa11.8□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 DDX12PQ92771 950 aa11.8□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 TBC1D31Q96DN5 1066 aa11.8□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 CNOT6LQ96LI5 555 aaKnown RBP11.8□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 SWAP70Q9UH65 585 aa11.8□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 ANAPC4Q9UJX5 808 aa11.8□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 ARHGEF35A5YM69 484 aa11.8□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 GCOM1H8Y6P7 765 aaPredicted RBP11.8□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 PRPF6O94906 941 aaKnown RBP11.8□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 POLR2MP0CAP2 368 aa11.8□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 FAM26FQ5R3K3 315 aa11.8□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 DHX36Q9H2U1 1008 aaKnown RBP11.8□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 PCIF1Q9H4Z3 704 aa11.8□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 PPANQ9NQ55 473 aaKnown RBP11.8□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 TMEM110-MUSTN1A8MSY1 372 aa11.79□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 SLC8A1P32418 973 aa11.79□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 ELF1P32519 619 aa11.79□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 STK4Q13043 487 aa11.79□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 ARHGAP44Q17R89 818 aa11.79□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 APOBEC3HQ6NTF7 200 aaKnown RBP11.79□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 SPATS2Q86XZ4 545 aaKnown RBP11.79□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 WRNIP1Q96S55 665 aa11.79□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 PPP1R16BQ96T49 567 aa11.79□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 ZHX2Q9Y6X8 837 aa11.79□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 BICDL2A1A5D9 508 aa11.79□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 HNRNPH1P31943 449 aaKnown RBP11.79□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 RASSF7Q02833 373 aa11.79□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 SF3A3Q12874 501 aaKnown RBP eCLIP11.79□□□□□ -0.522e-6■■■□□ 19.1
MSH5-SAPCD1-207ENST00000493662 STRIP1Q5VSL9 837 aa11.79□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 TOGARAM2Q6ZUX3 1019 aa11.79□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 TMEM179Q6ZVK1 233 aa11.79□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 TMC4Q7Z404 712 aa11.79□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 FAM114A1Q8IWE2 563 aa11.79□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 ANKS4BQ8N8V4 417 aa11.79□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 CHURC1Q8WUH1 139 aa11.79□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 CCDC127Q96BQ5 260 aa11.79□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 ALS2CR12Q96Q35 445 aa11.79□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 LRRC37A3O60309 1634 aa11.79□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 N4BP2Q86UW6 1770 aaPredicted RBP11.79□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 CYLC1P35663 651 aaPredicted RBP11.79□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 GADL1Q6ZQY3 521 aa11.79□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 KSR1Q8IVT5 923 aa11.79□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 SLC35F6Q8N357 371 aa11.79□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 UTP18Q9Y5J1 556 aaKnown RBP eCLIP11.79□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 ABCB11O95342 1321 aa11.79□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 STRCP1A6NGW2 1772 aa11.79□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 ARHGAP4P98171 946 aa11.78□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 GPR162Q16538 588 aa11.78□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 LRRN4CLQ8ND94 238 aa11.78□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 TACO1Q9BSH4 297 aaKnown RBP11.78□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 BUB1O43683 1085 aa11.78□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 HAUS3Q68CZ6 603 aa11.78□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 DLK2Q6UY11 383 aa11.78□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 MICALL2Q8IY33 904 aa11.78□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 MYOCDQ8IZQ8 938 aa11.78□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 ZKSCAN4Q969J2 545 aaPredicted RBP11.78□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 GLIS2Q9BZE0 524 aaPredicted RBP11.78□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 ACTN4O43707 911 aaKnown RBP11.78□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 FGFR1OPO95684 399 aaKnown RBP11.78□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 GJC1P36383 396 aa11.78□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 TRAPPC10P48553 1259 aa11.78□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 PPP4CP60510 307 aa11.78□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 KCTD16Q68DU8 428 aa11.78□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 HS2ST1Q7LGA3 356 aa11.78□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 CCDC155Q8N6L0 562 aa11.78□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 EHMT1Q9H9B1 1298 aa11.78□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 MARF1Q9Y4F3 1742 aaKnown RBP11.78□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 KIF5AQ12840 1032 aa11.77□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 WDR24Q96S15 920 aa11.77□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 NUDT12Q9BQG2 462 aa11.77□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 ZNF577Q9BSK1 485 aa11.77□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 FUT8Q9BYC5 575 aa11.77□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 N4BP1O75113 896 aaKnown RBP11.77□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 SHMT1P34896 483 aa11.77□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 KLK7P49862 253 aa11.77□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 ADAM9Q13443 819 aa11.77□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 PPP1R7Q15435 360 aa11.77□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 ARHGEF16Q5VV41 709 aa11.77□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 AGBL1Q96MI9 1066 aa11.77□□□□□ -0.52
MSH5-SAPCD1-207ENST00000493662 TACC1O75410 805 aa11.77□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 IL1R1P14778 569 aa11.77□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 CXCR5P32302 372 aa11.77□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 HMGCS2P54868 508 aa11.77□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 POLR2FP61218 127 aaKnown RBP11.77□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 KRT83P78385 493 aa11.77□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 VSTM4Q8IW00 320 aa11.77□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 ARMC2Q8NEN0 867 aa11.77□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 ENOX1Q8TC92 643 aaKnown RBP11.77□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 ZNF70Q9UC06 446 aaPredicted RBP11.77□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 SAR1BQ9Y6B6 198 aa11.77□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 KDM3BQ7LBC6 1761 aa11.77□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms