RNA–Protein interactions for RNA: ENST00000492357.1

USP54-214, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 3

Gene USP54, Length 353 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-214ENST00000492357 CEP57L1Q8IYX8 460 aa10.86□□□□□ -0.67
USP54-214ENST00000492357 CLIC6Q96NY7 704 aa10.86□□□□□ -0.67
USP54-214ENST00000492357 SDF4Q9BRK5 362 aa10.86□□□□□ -0.67
USP54-214ENST00000492357 PORCNQ9H237 461 aa10.86□□□□□ -0.67
USP54-214ENST00000492357 TNMDQ9H2S6 317 aa10.86□□□□□ -0.67
USP54-214ENST00000492357 GOLPH3LQ9H4A5 285 aa10.86□□□□□ -0.67
USP54-214ENST00000492357 AGO4Q9HCK5 861 aaKnown RBP10.86□□□□□ -0.67
USP54-214ENST00000492357 TUFT1Q9NNX1 390 aa10.86□□□□□ -0.67
USP54-214ENST00000492357 VTA1Q9NP79 307 aa10.86□□□□□ -0.67
USP54-214ENST00000492357 TMEM63CQ9P1W3 806 aa10.86□□□□□ -0.67
USP54-214ENST00000492357 VAV3Q9UKW4 847 aa10.86□□□□□ -0.67
USP54-214ENST00000492357 SOWAHBA6NEL2 793 aa10.85□□□□□ -0.67
USP54-214ENST00000492357 LYPLA2O95372 231 aa10.85□□□□□ -0.67
USP54-214ENST00000492357 XRCC6P12956 609 aaKnown RBP eCLIP10.85□□□□□ -0.67
USP54-214ENST00000492357 XRCC5P13010 732 aaKnown RBP10.85□□□□□ -0.67
USP54-214ENST00000492357 TAL1P17542 331 aaPredicted RBP10.85□□□□□ -0.67
USP54-214ENST00000492357 ADORA2AP29274 412 aa10.85□□□□□ -0.67
USP54-214ENST00000492357 TECP42680 631 aa10.85□□□□□ -0.67
USP54-214ENST00000492357 EPHA7Q15375 998 aa10.85□□□□□ -0.67
USP54-214ENST00000492357 CT47A1Q5JQC4 288 aaPredicted RBP10.85□□□□□ -0.67
USP54-214ENST00000492357 CYP4F22Q6NT55 531 aa10.85□□□□□ -0.67
USP54-214ENST00000492357 CNNM4Q6P4Q7 775 aa10.85□□□□□ -0.67
USP54-214ENST00000492357 TRIML1Q8N9V2 468 aa10.85□□□□□ -0.67
USP54-214ENST00000492357 CNNM3Q8NE01 707 aa10.85□□□□□ -0.67
USP54-214ENST00000492357 CDK5RAP3Q96JB5 506 aa10.85□□□□□ -0.67
USP54-214ENST00000492357 EFCC1Q9HA90 598 aa10.85□□□□□ -0.67
USP54-214ENST00000492357 CASP8AP2Q9UKL3 1982 aa10.85□□□□□ -0.67
USP54-214ENST00000492357 RBM47A0AV96 593 aaKnown RBP10.84□□□□□ -0.67
USP54-214ENST00000492357 WDR64B1ANS9 1081 aa10.84□□□□□ -0.67
USP54-214ENST00000492357 NKRFO15226 690 aaKnown RBP eCLIP10.84□□□□□ -0.67
USP54-214ENST00000492357 POLR2DO15514 142 aaKnown RBP10.84□□□□□ -0.67
USP54-214ENST00000492357 DHX15O43143 795 aaKnown RBP10.84□□□□□ -0.67
USP54-214ENST00000492357 ACTN4O43707 911 aaKnown RBP10.84□□□□□ -0.67
USP54-214ENST00000492357 SMC2O95347 1197 aa10.84□□□□□ -0.67
USP54-214ENST00000492357 MYCLP12524 364 aaPredicted RBP10.84□□□□□ -0.67
USP54-214ENST00000492357 GRIN1Q05586 938 aa10.84□□□□□ -0.67
USP54-214ENST00000492357 MAP2K5Q13163 448 aa10.84□□□□□ -0.67
USP54-214ENST00000492357 CRHR2Q13324 411 aa10.84□□□□□ -0.67
USP54-214ENST00000492357 ZSCAN23Q3MJ62 389 aa10.84□□□□□ -0.67
USP54-214ENST00000492357 TMEM119Q4V9L6 283 aa10.84□□□□□ -0.67
USP54-214ENST00000492357 MORN1Q5T089 497 aa10.84□□□□□ -0.67
USP54-214ENST00000492357 NT5DC1Q5TFE4 455 aa10.84□□□□□ -0.67
USP54-214ENST00000492357 RRAGBQ5VZM2 374 aa10.84□□□□□ -0.67
USP54-214ENST00000492357 OLFML2BQ68BL8 750 aa10.84□□□□□ -0.67
USP54-214ENST00000492357 PAXIP1Q6ZW49 1069 aaPredicted RBP10.84□□□□□ -0.67
USP54-214ENST00000492357 SH3RF1Q7Z6J0 888 aa10.84□□□□□ -0.67
USP54-214ENST00000492357 IL31RAQ8NI17 732 aa10.84□□□□□ -0.67
USP54-214ENST00000492357 SPATA20Q8TB22 786 aa10.84□□□□□ -0.67
USP54-214ENST00000492357 SNX29Q8TEQ0 813 aa10.84□□□□□ -0.67
USP54-214ENST00000492357 SCFD2Q8WU76 684 aa10.84□□□□□ -0.67
USP54-214ENST00000492357 USP6NLQ92738 828 aa10.84□□□□□ -0.67
USP54-214ENST00000492357 EPSTI1Q96J88 318 aa10.84□□□□□ -0.67
USP54-214ENST00000492357 HSD17B14Q9BPX1 270 aa10.84□□□□□ -0.67
USP54-214ENST00000492357 NUDT12Q9BQG2 462 aa10.84□□□□□ -0.67
USP54-214ENST00000492357 KBTBD4Q9NVX7 518 aa10.84□□□□□ -0.67
USP54-214ENST00000492357 KCND2Q9NZV8 630 aa10.84□□□□□ -0.67
USP54-214ENST00000492357 MRVI1Q9Y6F6 885 aa10.84□□□□□ -0.67
USP54-214ENST00000492357 MGAMO43451 1857 aa10.83□□□□□ -0.68
USP54-214ENST00000492357 ARP10275 920 aa10.83□□□□□ -0.68
USP54-214ENST00000492357 KCNA2P16389 499 aa10.83□□□□□ -0.68
USP54-214ENST00000492357 RGS2P41220 211 aa10.83□□□□□ -0.68
USP54-214ENST00000492357 STAT6P42226 847 aa10.83□□□□□ -0.68
USP54-214ENST00000492357 PRMT2P55345 433 aa10.83□□□□□ -0.68
USP54-214ENST00000492357 FCGRTP55899 365 aa10.83□□□□□ -0.68
USP54-214ENST00000492357 CNTN2Q02246 1040 aa10.83□□□□□ -0.68
USP54-214ENST00000492357 KIF22Q14807 665 aa10.83□□□□□ -0.68
USP54-214ENST00000492357 WDR78Q5VTH9 848 aa10.83□□□□□ -0.68
USP54-214ENST00000492357 LRSAM1Q6UWE0 723 aa10.83□□□□□ -0.68
USP54-214ENST00000492357 DPP9Q86TI2 863 aa10.83□□□□□ -0.68
USP54-214ENST00000492357 RASSF8Q8NHQ8 419 aa10.83□□□□□ -0.68
USP54-214ENST00000492357 CYP2W1Q8TAV3 490 aa10.83□□□□□ -0.68
USP54-214ENST00000492357 FGD4Q96M96 766 aa10.83□□□□□ -0.68
USP54-214ENST00000492357 GSDMAQ96QA5 445 aa10.83□□□□□ -0.68
USP54-214ENST00000492357 APBA2Q99767 749 aa10.83□□□□□ -0.68
USP54-214ENST00000492357 MMTAG2Q9BU76 263 aaKnown RBP10.83□□□□□ -0.68
USP54-214ENST00000492357 ABHD16BQ9H3Z7 469 aa10.83□□□□□ -0.68
USP54-214ENST00000492357 KIAA1468Q9P260 1216 aa10.83□□□□□ -0.68
USP54-214ENST00000492357 CPA4Q9UI42 421 aa10.83□□□□□ -0.68
USP54-214ENST00000492357 TUBE1Q9UJT0 475 aa10.83□□□□□ -0.68
USP54-214ENST00000492357 PPME1Q9Y570 386 aa10.83□□□□□ -0.68
USP54-214ENST00000492357 ASTN1O14525 1302 aa10.83□□□□□ -0.68
USP54-214ENST00000492357 POTEMA6NI47 508 aa10.82□□□□□ -0.68
USP54-214ENST00000492357 TNPO2O14787 897 aaKnown RBP10.82□□□□□ -0.68
USP54-214ENST00000492357 GTPBP6O43824 516 aaPredicted RBP10.82□□□□□ -0.68
USP54-214ENST00000492357 RGS20O76081 388 aa10.82□□□□□ -0.68
USP54-214ENST00000492357 P4HBP07237 508 aaKnown RBP10.82□□□□□ -0.68
USP54-214ENST00000492357 CCDC192P0DO97 292 aa10.82□□□□□ -0.68
USP54-214ENST00000492357 CCT6AP40227 531 aaKnown RBP10.82□□□□□ -0.68
USP54-214ENST00000492357 PPP1R2P41236 205 aa10.82□□□□□ -0.68
USP54-214ENST00000492357 UBXN2AP68543 259 aa10.82□□□□□ -0.68
USP54-214ENST00000492357 MDM2Q00987 491 aaPredicted RBP10.82□□□□□ -0.68
USP54-214ENST00000492357 TTLL4Q14679 1199 aa10.82□□□□□ -0.68
USP54-214ENST00000492357 POSTNQ15063 836 aa10.82□□□□□ -0.68
USP54-214ENST00000492357 ZRSR1Q15695 479 aaKnown RBP10.82□□□□□ -0.68
USP54-214ENST00000492357 LONRF3Q496Y0 759 aa10.82□□□□□ -0.68
USP54-214ENST00000492357 PDXDC2PQ6P474 469 aa10.82□□□□□ -0.68
USP54-214ENST00000492357 USP49Q70CQ1 688 aa10.82□□□□□ -0.68
USP54-214ENST00000492357 ARMCX2Q7L311 632 aa10.82□□□□□ -0.68
USP54-214ENST00000492357 LARP4BQ92615 738 aaKnown RBP10.82□□□□□ -0.68
USP54-214ENST00000492357 CCDC47Q96A33 483 aaKnown RBP10.82□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms