RNA–Protein interactions for RNA: ENST00000492270.1

UPF3A-209, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2 BASIC

Gene UPF3A, Length 494 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-209ENST00000492270 JAKMIP3Q5VZ66 844 aa28.24■■■□□ 2.11
UPF3A-209ENST00000492270 SESTD1Q86VW0 696 aa28.24■■■□□ 2.11
UPF3A-209ENST00000492270 GPR20Q99678 358 aa28.24■■■□□ 2.11
UPF3A-209ENST00000492270 SENP7Q9BQF6 1050 aa28.24■■■□□ 2.11
UPF3A-209ENST00000492270 ESYT2A0FGR8 921 aa28.23■■■□□ 2.11
UPF3A-209ENST00000492270 FOSP01100 380 aaPredicted RBP28.23■■■□□ 2.11
UPF3A-209ENST00000492270 LGALS2P05162 132 aa28.23■■■□□ 2.11
UPF3A-209ENST00000492270 KCNA2P16389 499 aa28.23■■■□□ 2.11
UPF3A-209ENST00000492270 MTMR1Q13613 665 aa28.23■■■□□ 2.11
UPF3A-209ENST00000492270 C7orf31Q8N865 590 aa28.23■■■□□ 2.11
UPF3A-209ENST00000492270 CYP2W1Q8TAV3 490 aa28.23■■■□□ 2.11
UPF3A-209ENST00000492270 ZMYND12Q9H0C1 365 aa28.23■■■□□ 2.11
UPF3A-209ENST00000492270 IL23AQ9NPF7 189 aa28.23■■■□□ 2.11
UPF3A-209ENST00000492270 JADE2Q9NQC1 790 aa28.23■■■□□ 2.11
UPF3A-209ENST00000492270 GTF2IRD1Q9UHL9 959 aa28.23■■■□□ 2.11
UPF3A-209ENST00000492270 NOD1Q9Y239 953 aa28.23■■■□□ 2.11
UPF3A-209ENST00000492270 KAT6AQ92794 2004 aa28.23■■■□□ 2.11
UPF3A-209ENST00000492270 AP3B2Q13367 1082 aa28.22■■■□□ 2.11
UPF3A-209ENST00000492270 Q7L0L9 218 aa28.22■■■□□ 2.11
UPF3A-209ENST00000492270 TEX2Q8IWB9 1127 aa28.22■■■□□ 2.11
UPF3A-209ENST00000492270 GLT8D2Q9H1C3 349 aa28.22■■■□□ 2.11
UPF3A-209ENST00000492270 TET1Q8NFU7 2136 aa28.21■■■□□ 2.11
UPF3A-209ENST00000492270 SREBF1P36956 1147 aa28.21■■■□□ 2.11
UPF3A-209ENST00000492270 HIC1Q14526 733 aa28.21■■■□□ 2.11
UPF3A-209ENST00000492270 ZNF365Q70YC5 407 aa28.21■■■□□ 2.11
UPF3A-209ENST00000492270 TRIM50Q86XT4 487 aa28.21■■■□□ 2.11
UPF3A-209ENST00000492270 VWCEQ96DN2 955 aa28.21■■■□□ 2.11
UPF3A-209ENST00000492270 CDHR1Q96JP9 859 aa28.21■■■□□ 2.11
UPF3A-209ENST00000492270 MXRA8Q9BRK3 442 aa28.21■■■□□ 2.11
UPF3A-209ENST00000492270 VPS54Q9P1Q0 977 aa28.21■■■□□ 2.11
UPF3A-209ENST00000492270 ZNF200P98182 395 aaPredicted RBP28.2■■■□□ 2.1
UPF3A-209ENST00000492270 CCDC12Q8WUD4 166 aaPredicted RBP28.2■■■□□ 2.1
UPF3A-209ENST00000492270 DHX38Q92620 1227 aaKnown RBP28.2■■■□□ 2.1
UPF3A-209ENST00000492270 C6orf50Q9HD87 102 aa28.2■■■□□ 2.1
UPF3A-209ENST00000492270 H3BRB1 525 aa28.19■■■□□ 2.1
UPF3A-209ENST00000492270 CPLX1O14810 134 aa28.19■■■□□ 2.1
UPF3A-209ENST00000492270 AK2P54819 239 aa28.19■■■□□ 2.1
UPF3A-209ENST00000492270 SSRP1Q08945 709 aaKnown RBP28.19■■■□□ 2.1
UPF3A-209ENST00000492270 UTP14CQ5TAP6 766 aaKnown RBP28.19■■■□□ 2.1
UPF3A-209ENST00000492270 GPR153Q6NV75 609 aa28.19■■■□□ 2.1
UPF3A-209ENST00000492270 PSRC1Q6PGN9 363 aaPredicted RBP28.19■■■□□ 2.1
UPF3A-209ENST00000492270 REXO1Q8N1G1 1221 aaKnown RBP28.19■■■□□ 2.1
UPF3A-209ENST00000492270 GIMAP8Q8ND71 665 aaPredicted RBP28.19■■■□□ 2.1
UPF3A-209ENST00000492270 RASGRP4Q8TDF6 673 aa28.19■■■□□ 2.1
UPF3A-209ENST00000492270 IL17RAQ96F46 866 aa28.19■■■□□ 2.1
UPF3A-209ENST00000492270 TUT1Q9H6E5 874 aaKnown RBP28.19■■■□□ 2.1
UPF3A-209ENST00000492270 KCNH7Q9NS40 1196 aa28.19■■■□□ 2.1
UPF3A-209ENST00000492270 TPCN1Q9ULQ1 816 aa28.19■■■□□ 2.1
UPF3A-209ENST00000492270 DTNBO60941 627 aa28.18■■■□□ 2.1
UPF3A-209ENST00000492270 ARP10275 920 aa28.18■■■□□ 2.1
UPF3A-209ENST00000492270 ARHGAP4P98171 946 aa28.18■■■□□ 2.1
UPF3A-209ENST00000492270 SCRN1Q12765 414 aa28.18■■■□□ 2.1
UPF3A-209ENST00000492270 TRIM22Q8IYM9 498 aa28.18■■■□□ 2.1
UPF3A-209ENST00000492270 RBAK-RBAKDNI3L0D1 243 aa28.17■■■□□ 2.1
UPF3A-209ENST00000492270 PITPNM1O00562 1244 aa28.17■■■□□ 2.1
UPF3A-209ENST00000492270 CEP55Q53EZ4 464 aa28.17■■■□□ 2.1
UPF3A-209ENST00000492270 FAM109BQ6ICB4 259 aaPredicted RBP28.17■■■□□ 2.1
UPF3A-209ENST00000492270 DEFB123Q8N688 67 aa28.17■■■□□ 2.1
UPF3A-209ENST00000492270 CCDC148Q8NFR7 591 aa28.17■■■□□ 2.1
UPF3A-209ENST00000492270 CRYGNQ8WXF5 182 aa28.17■■■□□ 2.1
UPF3A-209ENST00000492270 WNT8BQ93098 351 aa28.17■■■□□ 2.1
UPF3A-209ENST00000492270 GSTTP1A0A1W2PQM5 241 aa28.16■■■□□ 2.1
UPF3A-209ENST00000492270 GNA11P29992 359 aa28.16■■■□□ 2.1
UPF3A-209ENST00000492270 TCF7P36402 384 aaPredicted RBP28.16■■■□□ 2.1
UPF3A-209ENST00000492270 RASIP1Q5U651 963 aa28.16■■■□□ 2.1
UPF3A-209ENST00000492270 DEFB128Q7Z7B8 93 aa28.16■■■□□ 2.1
UPF3A-209ENST00000492270 AIFM3Q96NN9 605 aa28.16■■■□□ 2.1
UPF3A-209ENST00000492270 CXXC1Q9P0U4 656 aaPredicted RBP28.16■■■□□ 2.1
UPF3A-209ENST00000492270 MAFGO15525 162 aa28.15■■■□□ 2.1
UPF3A-209ENST00000492270 FGBP02675 491 aa28.15■■■□□ 2.1
UPF3A-209ENST00000492270 IQCF3P0C7M6 154 aa28.15■■■□□ 2.1
UPF3A-209ENST00000492270 SMIM10L2AP0DMW4 78 aa28.15■■■□□ 2.1
UPF3A-209ENST00000492270 SMIM10L2BP0DMW5 78 aa28.15■■■□□ 2.1
UPF3A-209ENST00000492270 BFSP2Q13515 415 aa28.15■■■□□ 2.1
UPF3A-209ENST00000492270 C8orf34Q49A92 452 aa28.15■■■□□ 2.1
UPF3A-209ENST00000492270 OTOP2Q7RTS6 562 aa28.15■■■□□ 2.1
UPF3A-209ENST00000492270 RETREG2Q8NC44 543 aa28.15■■■□□ 2.1
UPF3A-209ENST00000492270 PTPRSQ13332 1948 aa28.15■■■□□ 2.1
UPF3A-209ENST00000492270 WDR81Q562E7 1941 aa28.15■■■□□ 2.1
UPF3A-209ENST00000492270 FAM86B1E9PN63 330 aa28.14■■■□□ 2.1
UPF3A-209ENST00000492270 MEIS1O00470 390 aa28.14■■■□□ 2.1
UPF3A-209ENST00000492270 DEXIO95424 95 aa28.14■■■□□ 2.1
UPF3A-209ENST00000492270 FAM86B2P0C5J1 330 aa28.14■■■□□ 2.1
UPF3A-209ENST00000492270 ZNF76P36508 570 aa28.14■■■□□ 2.1
UPF3A-209ENST00000492270 SMAD3P84022 425 aaKnown RBP28.14■■■□□ 2.1
UPF3A-209ENST00000492270 ITGB3BPQ13352 177 aaPredicted RBP28.14■■■□□ 2.1
UPF3A-209ENST00000492270 CCDC155Q8N6L0 562 aa28.14■■■□□ 2.1
UPF3A-209ENST00000492270 CAGE1Q8TC20 777 aa28.14■■■□□ 2.1
UPF3A-209ENST00000492270 HERVK_113Q902F9 699 aa28.14■■■□□ 2.1
UPF3A-209ENST00000492270 SLKQ9H2G2 1235 aaPredicted RBP28.14■■■□□ 2.1
UPF3A-209ENST00000492270 AGO4Q9HCK5 861 aaKnown RBP28.14■■■□□ 2.1
UPF3A-209ENST00000492270 SH3GLB2Q9NR46 395 aa28.14■■■□□ 2.1
UPF3A-209ENST00000492270 C17orf102A2RUQ5 167 aa28.13■■■□□ 2.09
UPF3A-209ENST00000492270 PFKFB2O60825 505 aa28.13■■■□□ 2.09
UPF3A-209ENST00000492270 EIF5BO60841 1220 aaKnown RBP28.13■■■□□ 2.09
UPF3A-209ENST00000492270 LARGE1O95461 756 aa28.13■■■□□ 2.09
UPF3A-209ENST00000492270 HOXC8P31273 242 aa28.13■■■□□ 2.09
UPF3A-209ENST00000492270 TRIM71Q2Q1W2 868 aaKnown RBP28.13■■■□□ 2.09
UPF3A-209ENST00000492270 CPLX2Q6PUV4 134 aaKnown RBP28.13■■■□□ 2.09
UPF3A-209ENST00000492270 RPUSD2Q8IZ73 545 aaKnown RBP28.13■■■□□ 2.09
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms