RNA–Protein interactions for RNA: ENST00000491233.1

COL6A3-211, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 3

Gene COL6A3, Length 652 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-211ENST00000491233 SIP14410 1827 aa15.72■□□□□ 0.11
COL6A3-211ENST00000491233 CHD7Q9P2D1 2997 aa15.71■□□□□ 0.11
COL6A3-211ENST00000491233 C17orf102A2RUQ5 167 aa15.71■□□□□ 0.11
COL6A3-211ENST00000491233 EPOPA6NHQ4 379 aa15.71■□□□□ 0.11
COL6A3-211ENST00000491233 SPATA31C2B4DYI2 1134 aa15.71■□□□□ 0.11
COL6A3-211ENST00000491233 KIF28PB7ZC32 967 aa15.71■□□□□ 0.11
COL6A3-211ENST00000491233 H3BRB1 525 aa15.71■□□□□ 0.11
COL6A3-211ENST00000491233 RFXAPO00287 272 aa15.71■□□□□ 0.11
COL6A3-211ENST00000491233 TLL1O43897 1013 aa15.71■□□□□ 0.11
COL6A3-211ENST00000491233 SMIM10L2AP0DMW4 78 aa15.71■□□□□ 0.11
COL6A3-211ENST00000491233 SMIM10L2BP0DMW5 78 aa15.71■□□□□ 0.11
COL6A3-211ENST00000491233 TAP1Q03518 808 aa15.71■□□□□ 0.11
COL6A3-211ENST00000491233 MBTPS1Q14703 1052 aa15.71■□□□□ 0.11
COL6A3-211ENST00000491233 BMP2KLQ5H9B9 411 aa15.71■□□□□ 0.11
COL6A3-211ENST00000491233 PCNX4Q63HM2 1172 aa15.71■□□□□ 0.11
COL6A3-211ENST00000491233 METTL7BQ6UX53 244 aa15.71■□□□□ 0.11
COL6A3-211ENST00000491233 CYFIP1Q7L576 1253 aa15.71■□□□□ 0.11
COL6A3-211ENST00000491233 TMCO2Q7Z6W1 182 aaPredicted RBP15.71■□□□□ 0.11
COL6A3-211ENST00000491233 SERINC5Q86VE9 423 aa15.71■□□□□ 0.11
COL6A3-211ENST00000491233 MICU3Q86XE3 530 aa15.71■□□□□ 0.11
COL6A3-211ENST00000491233 TRIM50Q86XT4 487 aa15.71■□□□□ 0.11
COL6A3-211ENST00000491233 TUT1Q9H6E5 874 aaKnown RBP15.71■□□□□ 0.11
COL6A3-211ENST00000491233 SLC12A7Q9Y666 1083 aa15.71■□□□□ 0.11
COL6A3-211ENST00000491233 KAT6AQ92794 2004 aa15.71■□□□□ 0.11
COL6A3-211ENST00000491233 hCG_1642624A0A1W2PR95 340 aa15.7■□□□□ 0.1
COL6A3-211ENST00000491233 HOXC8P31273 242 aa15.7■□□□□ 0.1
COL6A3-211ENST00000491233 THPOP40225 353 aa15.7■□□□□ 0.1
COL6A3-211ENST00000491233 SP4Q02446 784 aa15.7■□□□□ 0.1
COL6A3-211ENST00000491233 XRRA1Q6P2D8 792 aa15.7■□□□□ 0.1
COL6A3-211ENST00000491233 TMTC3Q6ZXV5 915 aa15.7■□□□□ 0.1
COL6A3-211ENST00000491233 SPRED2Q7Z698 418 aa15.7■□□□□ 0.1
COL6A3-211ENST00000491233 ARNTL2Q8WYA1 636 aa15.7■□□□□ 0.1
COL6A3-211ENST00000491233 ATP6V0A1Q93050 837 aa15.7■□□□□ 0.1
COL6A3-211ENST00000491233 GPR20Q99678 358 aa15.7■□□□□ 0.1
COL6A3-211ENST00000491233 TELO2Q9Y4R8 837 aa15.7■□□□□ 0.1
COL6A3-211ENST00000491233 ABHD14A-ACY1A0A1B0GW23 586 aa15.69■□□□□ 0.1
COL6A3-211ENST00000491233 LCHNA4D1U4 455 aa15.69■□□□□ 0.1
COL6A3-211ENST00000491233 LGR5O75473 907 aa15.69■□□□□ 0.1
COL6A3-211ENST00000491233 UBE2SQ16763 222 aa15.69■□□□□ 0.1
COL6A3-211ENST00000491233 UTP14CQ5TAP6 766 aaKnown RBP15.69■□□□□ 0.1
COL6A3-211ENST00000491233 RNF20Q5VTR2 975 aa15.69■□□□□ 0.1
COL6A3-211ENST00000491233 CENPQQ7L2Z9 268 aaPredicted RBP15.69■□□□□ 0.1
COL6A3-211ENST00000491233 NLRX1Q86UT6 975 aa15.69■□□□□ 0.1
COL6A3-211ENST00000491233 SGMS1Q86VZ5 419 aa15.69■□□□□ 0.1
COL6A3-211ENST00000491233 CCDC82Q8N4S0 544 aa15.69■□□□□ 0.1
COL6A3-211ENST00000491233 ATXN2LQ8WWM7 1075 aaKnown RBP15.69■□□□□ 0.1
COL6A3-211ENST00000491233 ZBED2Q9BTP6 218 aa15.69■□□□□ 0.1
COL6A3-211ENST00000491233 USP26Q9BXU7 913 aa15.69■□□□□ 0.1
COL6A3-211ENST00000491233 EMSYQ7Z589 1322 aa15.68■□□□□ 0.1
COL6A3-211ENST00000491233 CNTNAP5Q8WYK1 1306 aa15.68■□□□□ 0.1
COL6A3-211ENST00000491233 PRRC2BQ5JSZ5 2229 aaKnown RBP15.68■□□□□ 0.1
COL6A3-211ENST00000491233 TREHO43280 583 aa15.68■□□□□ 0.1
COL6A3-211ENST00000491233 GTPBP6O43824 516 aaPredicted RBP15.68■□□□□ 0.1
COL6A3-211ENST00000491233 EFCAB14O75071 495 aa15.68■□□□□ 0.1
COL6A3-211ENST00000491233 IKBKEQ14164 716 aa15.68■□□□□ 0.1
COL6A3-211ENST00000491233 HEATR3Q7Z4Q2 680 aa15.68■□□□□ 0.1
COL6A3-211ENST00000491233 FANCBQ8NB91 859 aa15.68■□□□□ 0.1
COL6A3-211ENST00000491233 TCEANC2Q96MN5 208 aa15.68■□□□□ 0.1
COL6A3-211ENST00000491233 SENP7Q9BQF6 1050 aa15.68■□□□□ 0.1
COL6A3-211ENST00000491233 RNPEPQ9H4A4 650 aa15.68■□□□□ 0.1
COL6A3-211ENST00000491233 PSTPIP2Q9H939 334 aa15.68■□□□□ 0.1
COL6A3-211ENST00000491233 ZNF215Q9UL58 517 aaPredicted RBP15.68■□□□□ 0.1
COL6A3-211ENST00000491233 MTCH2Q9Y6C9 303 aa15.68■□□□□ 0.1
COL6A3-211ENST00000491233 SPDYE3A6NKU9 549 aa15.67■□□□□ 0.1
COL6A3-211ENST00000491233 RSPH10B2B2RC85 870 aa15.67■□□□□ 0.1
COL6A3-211ENST00000491233 GJB5O95377 273 aa15.67■□□□□ 0.1
COL6A3-211ENST00000491233 CTSHP09668 335 aa15.67■□□□□ 0.1
COL6A3-211ENST00000491233 RSPH10BP0C881 870 aa15.67■□□□□ 0.1
COL6A3-211ENST00000491233 KRT40Q6A162 431 aa15.67■□□□□ 0.1
COL6A3-211ENST00000491233 APOA5Q6Q788 366 aa15.67■□□□□ 0.1
COL6A3-211ENST00000491233 SYNE3Q6ZMZ3 975 aa15.67■□□□□ 0.1
COL6A3-211ENST00000491233 GPRASP2Q96D09 838 aa15.67■□□□□ 0.1
COL6A3-211ENST00000491233 NEK1Q96PY6 1258 aa15.67■□□□□ 0.1
COL6A3-211ENST00000491233 ASB2Q96Q27 587 aa15.67■□□□□ 0.1
COL6A3-211ENST00000491233 TSPYL2Q9H2G4 693 aaPredicted RBP15.67■□□□□ 0.1
COL6A3-211ENST00000491233 SETD4Q9NVD3 440 aa15.67■□□□□ 0.1
COL6A3-211ENST00000491233 NLRC5Q86WI3 1866 aa15.67■□□□□ 0.1
COL6A3-211ENST00000491233 TCF20Q9UGU0 1960 aaKnown RBP15.66■□□□□ 0.1
COL6A3-211ENST00000491233 CDC45O75419 566 aa15.66■□□□□ 0.1
COL6A3-211ENST00000491233 KCNA2P16389 499 aa15.66■□□□□ 0.1
COL6A3-211ENST00000491233 ITGB5P18084 799 aa15.66■□□□□ 0.1
COL6A3-211ENST00000491233 POU3F3P20264 500 aaPredicted RBP15.66■□□□□ 0.1
COL6A3-211ENST00000491233 MRPS5P82675 430 aaKnown RBP15.66■□□□□ 0.1
COL6A3-211ENST00000491233 GRB10Q13322 594 aa15.66■□□□□ 0.1
COL6A3-211ENST00000491233 SKIV2LQ15477 1246 aaKnown RBP15.66■□□□□ 0.1
COL6A3-211ENST00000491233 FAM117BQ6P1L5 589 aa15.66■□□□□ 0.1
COL6A3-211ENST00000491233 GIMAP8Q8ND71 665 aaPredicted RBP15.66■□□□□ 0.1
COL6A3-211ENST00000491233 DBF4BQ8NFT6 615 aa15.66■□□□□ 0.1
COL6A3-211ENST00000491233 LMBR1Q8WVP7 490 aa15.66■□□□□ 0.1
COL6A3-211ENST00000491233 CDHR1Q96JP9 859 aa15.66■□□□□ 0.1
COL6A3-211ENST00000491233 PKD2L1Q9P0L9 805 aa15.66■□□□□ 0.1
COL6A3-211ENST00000491233 ATP9AO75110 1047 aa15.65■□□□□ 0.1
COL6A3-211ENST00000491233 CAND2O75155 1236 aa15.65■□□□□ 0.1
COL6A3-211ENST00000491233 GNAT1P11488 350 aa15.65■□□□□ 0.1
COL6A3-211ENST00000491233 TCF7P36402 384 aaPredicted RBP15.65■□□□□ 0.1
COL6A3-211ENST00000491233 ARHGAP4P98171 946 aa15.65■□□□□ 0.1
COL6A3-211ENST00000491233 MKRN4PQ13434 485 aaPredicted RBP15.65■□□□□ 0.1
COL6A3-211ENST00000491233 RTN1Q16799 776 aa15.65■□□□□ 0.1
COL6A3-211ENST00000491233 PLEKHG4Q58EX7 1191 aa15.65■□□□□ 0.1
COL6A3-211ENST00000491233 WWC2Q6AWC2 1192 aa15.65■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms