RNA–Protein interactions for RNA: ENST00000490800.1

CLDN1-202, Transcript of claudin 1, humanhuman

TSL 2

Gene CLDN1, Length 432 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN1-202ENST00000490800 SYNE3Q6ZMZ3 975 aa8.72□□□□□ -1.01
CLDN1-202ENST00000490800 DGKHQ86XP1 1220 aa8.72□□□□□ -1.01
CLDN1-202ENST00000490800 FAM133AQ8N9E0 248 aa8.72□□□□□ -1.01
CLDN1-202ENST00000490800 ARMC2Q8NEN0 867 aa8.72□□□□□ -1.01
CLDN1-202ENST00000490800 TNPO1Q92973 898 aaKnown RBP8.72□□□□□ -1.01
CLDN1-202ENST00000490800 TSEN34Q9BSV6 310 aaKnown RBP8.72□□□□□ -1.01
CLDN1-202ENST00000490800 A1CFQ9NQ94 594 aaKnown RBP8.72□□□□□ -1.01
CLDN1-202ENST00000490800 STARD7Q9NQZ5 370 aa8.72□□□□□ -1.01
CLDN1-202ENST00000490800 PDLIM7Q9NR12 457 aa8.72□□□□□ -1.01
CLDN1-202ENST00000490800 DDX49Q9Y6V7 483 aaKnown RBP8.72□□□□□ -1.01
CLDN1-202ENST00000490800 SYNRGQ9UMZ2 1314 aa8.72□□□□□ -1.01
CLDN1-202ENST00000490800 DHX16O60231 1041 aaKnown RBP8.71□□□□□ -1.02
CLDN1-202ENST00000490800 PQBP1O60828 265 aaKnown RBP8.71□□□□□ -1.02
CLDN1-202ENST00000490800 DDAH1O94760 285 aa8.71□□□□□ -1.02
CLDN1-202ENST00000490800 ASGR1P07306 291 aa8.71□□□□□ -1.02
CLDN1-202ENST00000490800 C6orf222P0C671 652 aaPredicted RBP8.71□□□□□ -1.02
CLDN1-202ENST00000490800 TOP1P11387 765 aaKnown RBP8.71□□□□□ -1.02
CLDN1-202ENST00000490800 FDPSP14324 419 aaKnown RBP8.71□□□□□ -1.02
CLDN1-202ENST00000490800 SYT1P21579 422 aa8.71□□□□□ -1.02
CLDN1-202ENST00000490800 HMGN5P82970 282 aaKnown RBP8.71□□□□□ -1.02
CLDN1-202ENST00000490800 KCNC4Q03721 635 aa8.71□□□□□ -1.02
CLDN1-202ENST00000490800 TROAPQ12815 778 aa8.71□□□□□ -1.02
CLDN1-202ENST00000490800 SEMA3FQ13275 785 aa8.71□□□□□ -1.02
CLDN1-202ENST00000490800 NTRK3Q16288 839 aa8.71□□□□□ -1.02
CLDN1-202ENST00000490800 RTN1Q16799 776 aa8.71□□□□□ -1.02
CLDN1-202ENST00000490800 CCDC96Q2M329 555 aa8.71□□□□□ -1.02
CLDN1-202ENST00000490800 GNASQ5JWF2 1037 aa8.71□□□□□ -1.02
CLDN1-202ENST00000490800 C9orf50Q5SZB4 431 aa8.71□□□□□ -1.02
CLDN1-202ENST00000490800 PTCRAQ6ISU1 281 aaPredicted RBP8.71□□□□□ -1.02
CLDN1-202ENST00000490800 BTNL9Q6UXG8 535 aa8.71□□□□□ -1.02
CLDN1-202ENST00000490800 CATIPQ7Z7H3 387 aa8.71□□□□□ -1.02
CLDN1-202ENST00000490800 NUP133Q8WUM0 1156 aa8.71□□□□□ -1.02
CLDN1-202ENST00000490800 DCAF4Q8WV16 495 aa8.71□□□□□ -1.02
CLDN1-202ENST00000490800 VTI1AQ96AJ9 217 aa8.71□□□□□ -1.02
CLDN1-202ENST00000490800 PURBQ96QR8 312 aaKnown RBP8.71□□□□□ -1.02
CLDN1-202ENST00000490800 KATNBL1Q9H079 304 aa8.71□□□□□ -1.02
CLDN1-202ENST00000490800 MTMR6Q9Y217 621 aa8.71□□□□□ -1.02
CLDN1-202ENST00000490800 FRMPD2Q68DX3 1309 aaPredicted RBP8.71□□□□□ -1.02
CLDN1-202ENST00000490800 C11orf97A0A1B0GVM6 126 aaPredicted RBP8.7□□□□□ -1.02
CLDN1-202ENST00000490800 ASB14A6NK59 587 aa8.7□□□□□ -1.02
CLDN1-202ENST00000490800 CPLX1O14810 134 aa8.7□□□□□ -1.02
CLDN1-202ENST00000490800 STX6O43752 255 aa8.7□□□□□ -1.02
CLDN1-202ENST00000490800 PPFIA3O75145 1194 aa8.7□□□□□ -1.02
CLDN1-202ENST00000490800 ICAM1P05362 532 aa8.7□□□□□ -1.02
CLDN1-202ENST00000490800 CLTBP09497 229 aa8.7□□□□□ -1.02
CLDN1-202ENST00000490800 CALM1P0DP23 149 aa8.7□□□□□ -1.02
CLDN1-202ENST00000490800 CALM2P0DP24 149 aa8.7□□□□□ -1.02
CLDN1-202ENST00000490800 CALM3P0DP25 149 aa8.7□□□□□ -1.02
CLDN1-202ENST00000490800 RAG1P15918 1043 aa8.7□□□□□ -1.02
CLDN1-202ENST00000490800 GJA9P57773 515 aa8.7□□□□□ -1.02
CLDN1-202ENST00000490800 BEX3Q00994 111 aa8.7□□□□□ -1.02
CLDN1-202ENST00000490800 TNFAIP2Q03169 654 aa8.7□□□□□ -1.02
CLDN1-202ENST00000490800 FAAP100Q0VG06 881 aa8.7□□□□□ -1.02
CLDN1-202ENST00000490800 TMEM63BQ5T3F8 832 aa8.7□□□□□ -1.02
CLDN1-202ENST00000490800 SYDE2Q5VT97 1194 aa8.7□□□□□ -1.02
CLDN1-202ENST00000490800 FOXD4L5Q5VV16 416 aaPredicted RBP8.7□□□□□ -1.02
CLDN1-202ENST00000490800 LARP1BQ659C4 914 aaKnown RBP8.7□□□□□ -1.02
CLDN1-202ENST00000490800 NSMFQ6X4W1 530 aa8.7□□□□□ -1.02
CLDN1-202ENST00000490800 FANCBQ8NB91 859 aa8.7□□□□□ -1.02
CLDN1-202ENST00000490800 PCSK9Q8NBP7 692 aaKnown RBP8.7□□□□□ -1.02
CLDN1-202ENST00000490800 SLC17A8Q8NDX2 589 aa8.7□□□□□ -1.02
CLDN1-202ENST00000490800 FOXD4L4Q8WXT5 416 aaPredicted RBP8.7□□□□□ -1.02
CLDN1-202ENST00000490800 GLT1D1Q96MS3 346 aa8.7□□□□□ -1.02
CLDN1-202ENST00000490800 TOX2Q96NM4 488 aa8.7□□□□□ -1.02
CLDN1-202ENST00000490800 RANBP17Q9H2T7 1088 aaKnown RBP8.7□□□□□ -1.02
CLDN1-202ENST00000490800 SPC25Q9HBM1 224 aa8.7□□□□□ -1.02
CLDN1-202ENST00000490800 PDGFCQ9NRA1 345 aa8.7□□□□□ -1.02
CLDN1-202ENST00000490800 TMEM39AQ9NV64 488 aa8.7□□□□□ -1.02
CLDN1-202ENST00000490800 MTMR10Q9NXD2 777 aa8.7□□□□□ -1.02
CLDN1-202ENST00000490800 CYP39A1Q9NYL5 469 aa8.7□□□□□ -1.02
CLDN1-202ENST00000490800 CCPG1Q9ULG6 757 aa8.7□□□□□ -1.02
CLDN1-202ENST00000490800 FRMPD3Q5JV73 1810 aa8.7□□□□□ -1.02
CLDN1-202ENST00000490800 MYH4Q9Y623 1939 aa8.7□□□□□ -1.02
CLDN1-202ENST00000490800 CCDC196A0A1B0GTZ2 297 aa8.69□□□□□ -1.02
CLDN1-202ENST00000490800 DCDC2CA8MYV0 355 aa8.69□□□□□ -1.02
CLDN1-202ENST00000490800 KIAA0355O15063 1070 aa8.69□□□□□ -1.02
CLDN1-202ENST00000490800 CTAGE5O15320 804 aa8.69□□□□□ -1.02
CLDN1-202ENST00000490800 DYNC1LI2O43237 492 aaPredicted RBP8.69□□□□□ -1.02
CLDN1-202ENST00000490800 CDKL5O76039 1030 aa8.69□□□□□ -1.02
CLDN1-202ENST00000490800 ZSCAN22P10073 491 aaPredicted RBP8.69□□□□□ -1.02
CLDN1-202ENST00000490800 PDHBP11177 359 aa8.69□□□□□ -1.02
CLDN1-202ENST00000490800 IFNAR1P17181 557 aa8.69□□□□□ -1.02
CLDN1-202ENST00000490800 SMPD1P17405 629 aa8.69□□□□□ -1.02
CLDN1-202ENST00000490800 PDCP20941 246 aa8.69□□□□□ -1.02
CLDN1-202ENST00000490800 PTGS1P23219 599 aa8.69□□□□□ -1.02
CLDN1-202ENST00000490800 CST5P28325 142 aaPredicted RBP8.69□□□□□ -1.02
CLDN1-202ENST00000490800 SOX11P35716 441 aa8.69□□□□□ -1.02
CLDN1-202ENST00000490800 CDK7P50613 346 aa8.69□□□□□ -1.02
CLDN1-202ENST00000490800 EPHB4P54760 987 aa8.69□□□□□ -1.02
CLDN1-202ENST00000490800 BAATQ14032 418 aaPredicted RBP8.69□□□□□ -1.02
CLDN1-202ENST00000490800 PPP2R5BQ15173 497 aa8.69□□□□□ -1.02
CLDN1-202ENST00000490800 NFKBIBQ15653 356 aa8.69□□□□□ -1.02
CLDN1-202ENST00000490800 LINC01559Q495D7 138 aa8.69□□□□□ -1.02
CLDN1-202ENST00000490800 TAPT1Q6NXT6 567 aa8.69□□□□□ -1.02
CLDN1-202ENST00000490800 CPLX2Q6PUV4 134 aaKnown RBP8.69□□□□□ -1.02
CLDN1-202ENST00000490800 CLEC17AQ6ZS10 378 aa8.69□□□□□ -1.02
CLDN1-202ENST00000490800 EEPD1Q7L9B9 569 aa8.69□□□□□ -1.02
CLDN1-202ENST00000490800 ANKRD33Q7Z3H0 272 aa8.69□□□□□ -1.02
CLDN1-202ENST00000490800 FAM184AQ8NB25 1140 aa8.69□□□□□ -1.02
CLDN1-202ENST00000490800 FAM161BQ96MY7 647 aa8.69□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms