RNA–Protein interactions for RNA: ENST00000489862.1

DEPDC1-204, Transcript of DEP domain containing 1, humanhuman

TSL 1 (best)

Gene DEPDC1, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC1-204ENST00000489862 GMLQ99445 158 aa4.43□□□□□ -1.7
DEPDC1-204ENST00000489862 TMEFF2Q9UIK5 374 aaPredicted RBP4.43□□□□□ -1.7
DEPDC1-204ENST00000489862 TCAF1Q9Y4C2 921 aa4.43□□□□□ -1.7
DEPDC1-204ENST00000489862 MUSKO15146 869 aa4.43□□□□□ -1.7
DEPDC1-204ENST00000489862 DDAH1O94760 285 aa4.43□□□□□ -1.7
DEPDC1-204ENST00000489862 BMS1Q14692 1282 aaKnown RBP4.43□□□□□ -1.7
DEPDC1-204ENST00000489862 SLC9A5Q14940 896 aa4.43□□□□□ -1.7
DEPDC1-204ENST00000489862 SF1Q15637 639 aaKnown RBP4.43□□□□□ -1.7
DEPDC1-204ENST00000489862 MRM1Q6IN84 353 aaKnown RBP4.43□□□□□ -1.7
DEPDC1-204ENST00000489862 B3GNT8Q7Z7M8 397 aa4.43□□□□□ -1.7
DEPDC1-204ENST00000489862 RPUSD2Q8IZ73 545 aaKnown RBP4.43□□□□□ -1.7
DEPDC1-204ENST00000489862 NPLOC4Q8TAT6 608 aa4.43□□□□□ -1.7
DEPDC1-204ENST00000489862 SYT3Q9BQG1 590 aa4.43□□□□□ -1.7
DEPDC1-204ENST00000489862 BUD13Q9BRD0 619 aaKnown RBP eCLIP4.43□□□□□ -1.7
DEPDC1-204ENST00000489862 LRP2BPQ9P2M1 347 aa4.43□□□□□ -1.7
DEPDC1-204ENST00000489862 PRKAG3Q9UGI9 489 aa4.43□□□□□ -1.7
DEPDC1-204ENST00000489862 A0A087X1B8 175 aa4.42□□□□□ -1.7
DEPDC1-204ENST00000489862 C22orf46C9J442 243 aa4.42□□□□□ -1.7
DEPDC1-204ENST00000489862 SUSD5O60279 629 aa4.42□□□□□ -1.7
DEPDC1-204ENST00000489862 ZBTB7AO95365 584 aa4.42□□□□□ -1.7
DEPDC1-204ENST00000489862 ITGB6P18564 788 aa4.42□□□□□ -1.7
DEPDC1-204ENST00000489862 ECI1P42126 302 aa4.42□□□□□ -1.7
DEPDC1-204ENST00000489862 SELENOPP49908 381 aa4.42□□□□□ -1.7
DEPDC1-204ENST00000489862 INHBCP55103 352 aa4.42□□□□□ -1.7
DEPDC1-204ENST00000489862 ICAM4Q14773 271 aa4.42□□□□□ -1.7
DEPDC1-204ENST00000489862 PRSS53Q2L4Q9 553 aa4.42□□□□□ -1.7
DEPDC1-204ENST00000489862 TNNI3KQ59H18 835 aa4.42□□□□□ -1.7
DEPDC1-204ENST00000489862 ZNF227Q86WZ6 799 aa4.42□□□□□ -1.7
DEPDC1-204ENST00000489862 MCF2L2Q86YR7 1114 aa4.42□□□□□ -1.7
DEPDC1-204ENST00000489862 CCDC103Q8IW40 242 aa4.42□□□□□ -1.7
DEPDC1-204ENST00000489862 STAG1Q8WVM7 1258 aa4.42□□□□□ -1.7
DEPDC1-204ENST00000489862 DDX11Q96FC9 970 aa4.42□□□□□ -1.7
DEPDC1-204ENST00000489862 PSMD1Q99460 953 aa4.42□□□□□ -1.7
DEPDC1-204ENST00000489862 SGSM2O43147 1006 aa4.41□□□□□ -1.7
DEPDC1-204ENST00000489862 PEX14O75381 377 aa4.41□□□□□ -1.7
DEPDC1-204ENST00000489862 SNRPB2P08579 225 aaKnown RBP4.41□□□□□ -1.7
DEPDC1-204ENST00000489862 FPR2P25090 351 aa4.41□□□□□ -1.7
DEPDC1-204ENST00000489862 HOXC12P31275 282 aa4.41□□□□□ -1.7
DEPDC1-204ENST00000489862 CACNB2Q08289 660 aaPredicted RBP4.41□□□□□ -1.7
DEPDC1-204ENST00000489862 GNL2Q13823 731 aaKnown RBP4.41□□□□□ -1.7
DEPDC1-204ENST00000489862 CPA5Q8WXQ8 436 aa4.41□□□□□ -1.7
DEPDC1-204ENST00000489862 ZNF408Q9H9D4 720 aa4.41□□□□□ -1.7
DEPDC1-204ENST00000489862 TESMINQ9Y4I5 508 aa4.41□□□□□ -1.7
DEPDC1-204ENST00000489862 hCG_2014768A0A024R1R8 64 aa4.4□□□□□ -1.7
DEPDC1-204ENST00000489862 FGRP09769 529 aa4.4□□□□□ -1.7
DEPDC1-204ENST00000489862 MCM7P33993 719 aa4.4□□□□□ -1.7
DEPDC1-204ENST00000489862 BCL6P41182 706 aa4.4□□□□□ -1.7
DEPDC1-204ENST00000489862 SMAD4Q13485 552 aaKnown RBP4.4□□□□□ -1.7
DEPDC1-204ENST00000489862 FXNQ16595 210 aa4.4□□□□□ -1.7
DEPDC1-204ENST00000489862 IQCEQ6IPM2 695 aa4.4□□□□□ -1.7
DEPDC1-204ENST00000489862 ZNF585AQ6P3V2 769 aa4.4□□□□□ -1.7
DEPDC1-204ENST00000489862 CEP68Q76N32 757 aa4.4□□□□□ -1.7
DEPDC1-204ENST00000489862 DCP2Q8IU60 420 aaKnown RBP4.4□□□□□ -1.7
DEPDC1-204ENST00000489862 FAM26EQ8N5C1 309 aa4.4□□□□□ -1.7
DEPDC1-204ENST00000489862 KREMEN2Q8NCW0 462 aa4.4□□□□□ -1.7
DEPDC1-204ENST00000489862 ADAMTS17Q8TE56 1095 aa4.4□□□□□ -1.7
DEPDC1-204ENST00000489862 DIO2Q92813 273 aa4.4□□□□□ -1.7
DEPDC1-204ENST00000489862 ZBTB8AQ96BR9 441 aa4.4□□□□□ -1.7
DEPDC1-204ENST00000489862 TRIM8Q9BZR9 551 aa4.4□□□□□ -1.7
DEPDC1-204ENST00000489862 CD248Q9HCU0 757 aa4.4□□□□□ -1.7
DEPDC1-204ENST00000489862 SPATA6Q9NWH7 488 aaPredicted RBP4.4□□□□□ -1.7
DEPDC1-204ENST00000489862 FBXL7Q9UJT9 491 aa4.4□□□□□ -1.7
DEPDC1-204ENST00000489862 TIMM13Q9Y5L4 95 aaPredicted RBP4.4□□□□□ -1.7
DEPDC1-204ENST00000489862 PLEKHD1A6NEE1 506 aa4.39□□□□□ -1.71
DEPDC1-204ENST00000489862 MEFVO15553 781 aaPredicted RBP4.39□□□□□ -1.71
DEPDC1-204ENST00000489862 TPD52L2O43399 206 aaKnown RBP4.39□□□□□ -1.71
DEPDC1-204ENST00000489862 GJB6O95452 261 aa4.39□□□□□ -1.71
DEPDC1-204ENST00000489862 C8BP07358 591 aa4.39□□□□□ -1.71
DEPDC1-204ENST00000489862 LCP1P13796 627 aa4.39□□□□□ -1.71
DEPDC1-204ENST00000489862 KCNJ6P48051 423 aa4.39□□□□□ -1.71
DEPDC1-204ENST00000489862 KRTAP10-11P60412 298 aa4.39□□□□□ -1.71
DEPDC1-204ENST00000489862 RPL11P62913 178 aaKnown RBP4.39□□□□□ -1.71
DEPDC1-204ENST00000489862 ARID5AQ03989 594 aa4.39□□□□□ -1.71
DEPDC1-204ENST00000489862 SPDYAQ5MJ70 313 aa4.39□□□□□ -1.71
DEPDC1-204ENST00000489862 DENND5AQ6IQ26 1287 aa4.39□□□□□ -1.71
DEPDC1-204ENST00000489862 STK32CQ86UX6 486 aa4.39□□□□□ -1.71
DEPDC1-204ENST00000489862 NLRP10Q86W26 655 aa4.39□□□□□ -1.71
DEPDC1-204ENST00000489862 RCBTB1Q8NDN9 531 aa4.39□□□□□ -1.71
DEPDC1-204ENST00000489862 AP5M1Q9H0R1 490 aa4.39□□□□□ -1.71
DEPDC1-204ENST00000489862 OSBPL2Q9H1P3 480 aa4.39□□□□□ -1.71
DEPDC1-204ENST00000489862 ST7Q9NRC1 585 aa4.39□□□□□ -1.71
DEPDC1-204ENST00000489862 GABBR1Q9UBS5 961 aa4.39□□□□□ -1.71
DEPDC1-204ENST00000489862 ONECUT2O95948 504 aa4.39□□□□□ -1.71
DEPDC1-204ENST00000489862 SCG5P05408 212 aa4.39□□□□□ -1.71
DEPDC1-204ENST00000489862 GRIA2P42262 883 aa4.39□□□□□ -1.71
DEPDC1-204ENST00000489862 IL12RB1P42701 662 aa4.39□□□□□ -1.71
DEPDC1-204ENST00000489862 IGBP1P78318 339 aa4.39□□□□□ -1.71
DEPDC1-204ENST00000489862 E4F1Q66K89 784 aaPredicted RBP4.39□□□□□ -1.71
DEPDC1-204ENST00000489862 CD300LDQ6UXZ3 194 aa4.39□□□□□ -1.71
DEPDC1-204ENST00000489862 ETV3LQ6ZN32 361 aa4.39□□□□□ -1.71
DEPDC1-204ENST00000489862 MILR1Q7Z6M3 343 aa4.39□□□□□ -1.71
DEPDC1-204ENST00000489862 EXOC8Q8IYI6 725 aa4.39□□□□□ -1.71
DEPDC1-204ENST00000489862 CELF2-AS1Q8N7Q2 184 aa4.39□□□□□ -1.71
DEPDC1-204ENST00000489862 TMEM145Q8NBT3 493 aa4.39□□□□□ -1.71
DEPDC1-204ENST00000489862 HNRNPLLQ8WVV9 542 aaKnown RBP4.39□□□□□ -1.71
DEPDC1-204ENST00000489862 SEC14L1Q92503 715 aa4.39□□□□□ -1.71
DEPDC1-204ENST00000489862 EVI5LQ96CN4 794 aa4.39□□□□□ -1.71
DEPDC1-204ENST00000489862 TRMT2BQ96GJ1 504 aaKnown RBP4.39□□□□□ -1.71
DEPDC1-204ENST00000489862 GORASP1Q9BQQ3 440 aa4.39□□□□□ -1.71
DEPDC1-204ENST00000489862 KANSL2Q9H9L4 492 aa4.39□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms