RNA–Protein interactions for RNA: ENST00000487984.1

SDC3-204, Transcript of syndecan 3, humanhuman

TSL 3

Gene SDC3, Length 355 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-204ENST00000487984 CXCL10P02778 98 aa14.14□□□□□ -0.15
SDC3-204ENST00000487984 CA3P07451 260 aa14.14□□□□□ -0.15
SDC3-204ENST00000487984 UBE2SQ16763 222 aa14.14□□□□□ -0.15
SDC3-204ENST00000487984 TSGA10IPQ3SY00 556 aa14.14□□□□□ -0.15
SDC3-204ENST00000487984 ZNF618Q5T7W0 954 aa14.14□□□□□ -0.15
SDC3-204ENST00000487984 TRAF7Q6Q0C0 670 aa14.14□□□□□ -0.15
SDC3-204ENST00000487984 SYNE3Q6ZMZ3 975 aa14.14□□□□□ -0.15
SDC3-204ENST00000487984 DHX32Q7L7V1 743 aaKnown RBP14.14□□□□□ -0.15
SDC3-204ENST00000487984 PHOSPHO2Q8TCD6 241 aa14.14□□□□□ -0.15
SDC3-204ENST00000487984 GPR20Q99678 358 aa14.14□□□□□ -0.15
SDC3-204ENST00000487984 TUT1Q9H6E5 874 aaKnown RBP14.14□□□□□ -0.15
SDC3-204ENST00000487984 TELO2Q9Y4R8 837 aa14.14□□□□□ -0.15
SDC3-204ENST00000487984 CNTNAP5Q8WYK1 1306 aa14.14□□□□□ -0.15
SDC3-204ENST00000487984 SPTBN5Q9NRC6 3674 aaKnown RBP14.13□□□□□ -0.15
SDC3-204ENST00000487984 C17orf102A2RUQ5 167 aa14.13□□□□□ -0.15
SDC3-204ENST00000487984 PARNO95453 639 aaKnown RBP14.13□□□□□ -0.15
SDC3-204ENST00000487984 SMIM10L2AP0DMW4 78 aa14.13□□□□□ -0.15
SDC3-204ENST00000487984 SMIM10L2BP0DMW5 78 aa14.13□□□□□ -0.15
SDC3-204ENST00000487984 HOXC8P31273 242 aa14.13□□□□□ -0.15
SDC3-204ENST00000487984 WDR5P61964 334 aaKnown RBP14.13□□□□□ -0.15
SDC3-204ENST00000487984 TCTN1Q2MV58 587 aa14.13□□□□□ -0.15
SDC3-204ENST00000487984 HEATR3Q7Z4Q2 680 aa14.13□□□□□ -0.15
SDC3-204ENST00000487984 NLRX1Q86UT6 975 aa14.13□□□□□ -0.15
SDC3-204ENST00000487984 SERINC5Q86VE9 423 aa14.13□□□□□ -0.15
SDC3-204ENST00000487984 TRIM50Q86XT4 487 aa14.13□□□□□ -0.15
SDC3-204ENST00000487984 HERC6Q8IVU3 1022 aa14.13□□□□□ -0.15
SDC3-204ENST00000487984 SENP7Q9BQF6 1050 aa14.13□□□□□ -0.15
SDC3-204ENST00000487984 USP26Q9BXU7 913 aa14.13□□□□□ -0.15
SDC3-204ENST00000487984 RBM28Q9NW13 759 aaKnown RBP14.13□□□□□ -0.15
SDC3-204ENST00000487984 BRPF3Q9ULD4 1205 aa14.13□□□□□ -0.15
SDC3-204ENST00000487984 ITGB5P18084 799 aa14.12□□□□□ -0.15
SDC3-204ENST00000487984 IGFBP4P22692 258 aa14.12□□□□□ -0.15
SDC3-204ENST00000487984 KCNJ6P48051 423 aa14.12□□□□□ -0.15
SDC3-204ENST00000487984 SP4Q02446 784 aa14.12□□□□□ -0.15
SDC3-204ENST00000487984 FUT2Q10981 343 aa14.12□□□□□ -0.15
SDC3-204ENST00000487984 KRT32Q14532 448 aa14.12□□□□□ -0.15
SDC3-204ENST00000487984 MBTPS1Q14703 1052 aa14.12□□□□□ -0.15
SDC3-204ENST00000487984 WWC2Q6AWC2 1192 aa14.12□□□□□ -0.15
SDC3-204ENST00000487984 CNKSR3Q6P9H4 555 aa14.12□□□□□ -0.15
SDC3-204ENST00000487984 PPM1EQ8WY54 764 aa14.12□□□□□ -0.15
SDC3-204ENST00000487984 ATP6V0A1Q93050 837 aa14.12□□□□□ -0.15
SDC3-204ENST00000487984 GPRASP2Q96D09 838 aa14.12□□□□□ -0.15
SDC3-204ENST00000487984 PRDM6Q9NQX0 595 aa14.12□□□□□ -0.15
SDC3-204ENST00000487984 TET1Q8NFU7 2136 aa14.12□□□□□ -0.15
SDC3-204ENST00000487984 SPDYE3A6NKU9 549 aa14.11□□□□□ -0.15
SDC3-204ENST00000487984 TREHO43280 583 aa14.11□□□□□ -0.15
SDC3-204ENST00000487984 ZBTB43O43298 467 aa14.11□□□□□ -0.15
SDC3-204ENST00000487984 ATP9AO75110 1047 aa14.11□□□□□ -0.15
SDC3-204ENST00000487984 ARHGEF15O94989 841 aa14.11□□□□□ -0.15
SDC3-204ENST00000487984 KCNA2P16389 499 aa14.11□□□□□ -0.15
SDC3-204ENST00000487984 THPOP40225 353 aa14.11□□□□□ -0.15
SDC3-204ENST00000487984 DEFB103AP81534 67 aa14.11□□□□□ -0.15
SDC3-204ENST00000487984 RTN1Q16799 776 aa14.11□□□□□ -0.15
SDC3-204ENST00000487984 UTP14CQ5TAP6 766 aaKnown RBP14.11□□□□□ -0.15
SDC3-204ENST00000487984 TYW1BQ6NUM6 668 aa14.11□□□□□ -0.15
SDC3-204ENST00000487984 TMCO2Q7Z6W1 182 aaPredicted RBP14.11□□□□□ -0.15
SDC3-204ENST00000487984 RNPEPQ9H4A4 650 aa14.11□□□□□ -0.15
SDC3-204ENST00000487984 PCDHA6Q9UN73 950 aa14.11□□□□□ -0.15
SDC3-204ENST00000487984 PCDHA8Q9Y5H6 950 aa14.11□□□□□ -0.15
SDC3-204ENST00000487984 UBIAD1Q9Y5Z9 338 aa14.11□□□□□ -0.15
SDC3-204ENST00000487984 MYH7BA7E2Y1 1941 aa14.11□□□□□ -0.15
SDC3-204ENST00000487984 GBF1Q92538 1859 aa14.1□□□□□ -0.15
SDC3-204ENST00000487984 KLF18A0A0U1RQI7 1052 aa14.1□□□□□ -0.15
SDC3-204ENST00000487984 EPOPA6NHQ4 379 aa14.1□□□□□ -0.15
SDC3-204ENST00000487984 GOLGA8AA7E2F4 631 aa14.1□□□□□ -0.15
SDC3-204ENST00000487984 GOLGA8BA8MQT2 603 aa14.1□□□□□ -0.15
SDC3-204ENST00000487984 KIF28PB7ZC32 967 aa14.1□□□□□ -0.15
SDC3-204ENST00000487984 CPA1P15085 419 aa14.1□□□□□ -0.15
SDC3-204ENST00000487984 NAPAP54920 295 aa14.1□□□□□ -0.15
SDC3-204ENST00000487984 GIMAP8Q8ND71 665 aaPredicted RBP14.1□□□□□ -0.15
SDC3-204ENST00000487984 KCNB2Q92953 911 aa14.1□□□□□ -0.15
SDC3-204ENST00000487984 CDHR1Q96JP9 859 aa14.1□□□□□ -0.15
SDC3-204ENST00000487984 CERS4Q9HA82 394 aa14.1□□□□□ -0.15
SDC3-204ENST00000487984 FAM217BQ9NTX9 383 aaPredicted RBP14.1□□□□□ -0.15
SDC3-204ENST00000487984 SETD4Q9NVD3 440 aa14.1□□□□□ -0.15
SDC3-204ENST00000487984 ZNF215Q9UL58 517 aaPredicted RBP14.1□□□□□ -0.15
SDC3-204ENST00000487984 MYO9BQ13459 2157 aa14.1□□□□□ -0.15
SDC3-204ENST00000487984 TRIP12Q14669 1992 aaPredicted RBP14.09□□□□□ -0.15
SDC3-204ENST00000487984 ABHD14A-ACY1A0A1B0GW23 586 aa14.09□□□□□ -0.15
SDC3-204ENST00000487984 RSPH10B2B2RC85 870 aa14.09□□□□□ -0.15
SDC3-204ENST00000487984 TLL1O43897 1013 aa14.09□□□□□ -0.15
SDC3-204ENST00000487984 LGR5O75473 907 aa14.09□□□□□ -0.15
SDC3-204ENST00000487984 HMGB1P09429 215 aaKnown RBP14.09□□□□□ -0.15
SDC3-204ENST00000487984 RSPH10BP0C881 870 aa14.09□□□□□ -0.15
SDC3-204ENST00000487984 CDC27P30260 824 aa14.09□□□□□ -0.15
SDC3-204ENST00000487984 TCF7P36402 384 aaPredicted RBP14.09□□□□□ -0.15
SDC3-204ENST00000487984 TAP1Q03518 808 aa14.09□□□□□ -0.15
SDC3-204ENST00000487984 MTMR1Q13613 665 aa14.09□□□□□ -0.15
SDC3-204ENST00000487984 CCDC85BQ15834 202 aaPredicted RBP14.09□□□□□ -0.15
SDC3-204ENST00000487984 PPP1R18Q6NYC8 613 aa14.09□□□□□ -0.15
SDC3-204ENST00000487984 RIC8AQ9NPQ8 531 aa14.09□□□□□ -0.15
SDC3-204ENST00000487984 PKD2L1Q9P0L9 805 aa14.09□□□□□ -0.15
SDC3-204ENST00000487984 V9GY48 417 aaPredicted RBP14.09□□□□□ -0.15
SDC3-204ENST00000487984 TTC28Q96AY4 2481 aa14.09□□□□□ -0.15
SDC3-204ENST00000487984 EMSYQ7Z589 1322 aa14.09□□□□□ -0.15
SDC3-204ENST00000487984 LCHNA4D1U4 455 aa14.08□□□□□ -0.16
SDC3-204ENST00000487984 STXBP3O00186 592 aa14.08□□□□□ -0.16
SDC3-204ENST00000487984 RFXAPO00287 272 aa14.08□□□□□ -0.16
SDC3-204ENST00000487984 EFCAB14O75071 495 aa14.08□□□□□ -0.16
SDC3-204ENST00000487984 CTSHP09668 335 aa14.08□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms