RNA–Protein interactions for RNA: ENST00000478938.1

SDF4-206, Transcript of stromal cell derived factor 4, humanhuman

TSL 2

Gene SDF4, Length 2,591 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF4-206ENST00000478938 SHISA4Q96DD7 197 aa23.22■■□□□ 1.31
SDF4-206ENST00000478938 MYH6P13533 1939 aa23.22■■□□□ 1.31
SDF4-206ENST00000478938 ABCD1P33897 745 aa23.22■■□□□ 1.31
SDF4-206ENST00000478938 STAT6P42226 847 aa23.22■■□□□ 1.31
SDF4-206ENST00000478938 DHX9Q08211 1270 aaKnown RBP23.22■■□□□ 1.31
SDF4-206ENST00000478938 FBF1Q8TES7 1133 aa23.22■■□□□ 1.31
SDF4-206ENST00000478938 XAGE3Q8WTP9 111 aa23.22■■□□□ 1.31
SDF4-206ENST00000478938 FERMT2Q96AC1 680 aa23.22■■□□□ 1.31
SDF4-206ENST00000478938 PBKQ96KB5 322 aa23.22■■□□□ 1.31
SDF4-206ENST00000478938 MMTAG2Q9BU76 263 aaKnown RBP23.22■■□□□ 1.31
SDF4-206ENST00000478938 GOPCQ9HD26 462 aa23.22■■□□□ 1.31
SDF4-206ENST00000478938 DAPK3O43293 454 aa23.21■■□□□ 1.31
SDF4-206ENST00000478938 ITGA6P23229 1130 aa23.21■■□□□ 1.31
SDF4-206ENST00000478938 KLC1Q07866 573 aa23.21■■□□□ 1.31
SDF4-206ENST00000478938 MYBPC3Q14896 1274 aa23.21■■□□□ 1.31
SDF4-206ENST00000478938 A0A1W2PQJ5 194 aa23.21■■□□□ 1.31
SDF4-206ENST00000478938 CREB3O43889 395 aa23.21■■□□□ 1.31
SDF4-206ENST00000478938 MTIF2P46199 727 aaKnown RBP23.21■■□□□ 1.31
SDF4-206ENST00000478938 SGMS1Q86VZ5 419 aa23.21■■□□□ 1.31
SDF4-206ENST00000478938 APLFQ8IW19 511 aaPredicted RBP23.21■■□□□ 1.31
SDF4-206ENST00000478938 CSGALNACT2Q8N6G5 542 aa23.21■■□□□ 1.31
SDF4-206ENST00000478938 TMEM87BQ96K49 555 aa23.21■■□□□ 1.31
SDF4-206ENST00000478938 CNOT6LQ96LI5 555 aaKnown RBP23.21■■□□□ 1.31
SDF4-206ENST00000478938 FGD4Q96M96 766 aa23.21■■□□□ 1.31
SDF4-206ENST00000478938 SMIM23A6NLE4 172 aa23.2■■□□□ 1.3
SDF4-206ENST00000478938 SNX3O60493 162 aa23.2■■□□□ 1.3
SDF4-206ENST00000478938 MIIPQ5JXC2 388 aa23.2■■□□□ 1.3
SDF4-206ENST00000478938 ASRGL1Q7L266 308 aa23.2■■□□□ 1.3
SDF4-206ENST00000478938 UCMAQ8WVF2 138 aa23.2■■□□□ 1.3
SDF4-206ENST00000478938 APPBP2Q92624 585 aa23.2■■□□□ 1.3
SDF4-206ENST00000478938 METTL22Q9BUU2 404 aaPredicted RBP23.2■■□□□ 1.3
SDF4-206ENST00000478938 NOC4LQ9BVI4 516 aaKnown RBP23.2■■□□□ 1.3
SDF4-206ENST00000478938 AP1M1Q9BXS5 423 aa23.2■■□□□ 1.3
SDF4-206ENST00000478938 IQSEC3Q9UPP2 1182 aaPredicted RBP23.2■■□□□ 1.3
SDF4-206ENST00000478938 NRXN3Q9Y4C0 1643 aa23.2■■□□□ 1.3
SDF4-206ENST00000478938 RNASELQ05823 741 aaKnown RBP23.2■■□□□ 1.3
SDF4-206ENST00000478938 OR52E8Q6IFG1 317 aa23.2■■□□□ 1.3
SDF4-206ENST00000478938 TTI2Q6NXR4 508 aa23.2■■□□□ 1.3
SDF4-206ENST00000478938 DUSP9Q99956 384 aaKnown RBP23.2■■□□□ 1.3
SDF4-206ENST00000478938 INTS9Q9NV88 658 aaKnown RBP23.2■■□□□ 1.3
SDF4-206ENST00000478938 PXDNQ92626 1479 aa23.19■■□□□ 1.3
SDF4-206ENST00000478938 HNRNPH3P31942 346 aaKnown RBP23.19■■□□□ 1.3
SDF4-206ENST00000478938 CCDC178Q5BJE1 867 aa23.19■■□□□ 1.3
SDF4-206ENST00000478938 ZNF530Q6P9A1 599 aaPredicted RBP23.19■■□□□ 1.3
SDF4-206ENST00000478938 KIAA0825Q8IV33 1275 aa23.19■■□□□ 1.3
SDF4-206ENST00000478938 EIF1ADQ8N9N8 165 aaKnown RBP23.19■■□□□ 1.3
SDF4-206ENST00000478938 IFT74Q96LB3 600 aa23.19■■□□□ 1.3
SDF4-206ENST00000478938 KRT23Q9C075 422 aa23.19■■□□□ 1.3
SDF4-206ENST00000478938 TMEM59LQ9UK28 342 aa23.19■■□□□ 1.3
SDF4-206ENST00000478938 LRRC53A6NM62 1247 aa23.19■■□□□ 1.3
SDF4-206ENST00000478938 ATP5J2-PTCD1G3V325 749 aa23.19■■□□□ 1.3
SDF4-206ENST00000478938 PTCD1O75127 700 aaKnown RBP23.19■■□□□ 1.3
SDF4-206ENST00000478938 DYNC1I2Q13409 638 aaKnown RBP23.19■■□□□ 1.3
SDF4-206ENST00000478938 COPS6Q7L5N1 327 aa23.19■■□□□ 1.3
SDF4-206ENST00000478938 SDCCAG8Q86SQ7 713 aaPredicted RBP23.19■■□□□ 1.3
SDF4-206ENST00000478938 PARP4Q9UKK3 1724 aaKnown RBP23.18■■□□□ 1.3
SDF4-206ENST00000478938 FLOT1O75955 427 aa23.18■■□□□ 1.3
SDF4-206ENST00000478938 GBP1P32455 592 aa23.18■■□□□ 1.3
SDF4-206ENST00000478938 MMP13P45452 471 aa23.18■■□□□ 1.3
SDF4-206ENST00000478938 PTGDRQ13258 359 aa23.18■■□□□ 1.3
SDF4-206ENST00000478938 RTN1Q16799 776 aa23.18■■□□□ 1.3
SDF4-206ENST00000478938 LRRC24Q50LG9 513 aa23.18■■□□□ 1.3
SDF4-206ENST00000478938 PI16Q6UXB8 463 aa23.18■■□□□ 1.3
SDF4-206ENST00000478938 GIGYF2Q6Y7W6 1299 aaKnown RBP23.18■■□□□ 1.3
SDF4-206ENST00000478938 RRAGAQ7L523 313 aa23.18■■□□□ 1.3
SDF4-206ENST00000478938 STAG2Q8N3U4 1231 aa23.18■■□□□ 1.3
SDF4-206ENST00000478938 IFT43Q96FT9 208 aa23.18■■□□□ 1.3
SDF4-206ENST00000478938 DDX47Q9H0S4 455 aaKnown RBP23.18■■□□□ 1.3
SDF4-206ENST00000478938 SDAD1Q9NVU7 687 aaKnown RBP eCLIP23.18■■□□□ 1.3
SDF4-206ENST00000478938 ATP8A1Q9Y2Q0 1164 aa23.18■■□□□ 1.3
SDF4-206ENST00000478938 PLEKHG1Q9ULL1 1385 aa23.18■■□□□ 1.3
SDF4-206ENST00000478938 DEXIO95424 95 aa23.18■■□□□ 1.3
SDF4-206ENST00000478938 MAGEA10P43363 369 aaPredicted RBP23.18■■□□□ 1.3
SDF4-206ENST00000478938 TCIRG1Q13488 830 aa23.18■■□□□ 1.3
SDF4-206ENST00000478938 SCARF1Q14162 830 aa23.18■■□□□ 1.3
SDF4-206ENST00000478938 PTPROQ16827 1216 aa23.18■■□□□ 1.3
SDF4-206ENST00000478938 RNF10Q8N5U6 811 aaKnown RBP23.18■■□□□ 1.3
SDF4-206ENST00000478938 NSRP1Q9H0G5 558 aaKnown RBP23.18■■□□□ 1.3
SDF4-206ENST00000478938 RNPEPL1Q9HAU8 725 aa23.18■■□□□ 1.3
SDF4-206ENST00000478938 USP15Q9Y4E8 981 aaPredicted RBP23.18■■□□□ 1.3
SDF4-206ENST00000478938 TLDC2A0PJX2 215 aa23.17■■□□□ 1.3
SDF4-206ENST00000478938 OAS1P00973 400 aaKnown RBP23.17■■□□□ 1.3
SDF4-206ENST00000478938 PEX5P50542 639 aa23.17■■□□□ 1.3
SDF4-206ENST00000478938 MEI1Q5TIA1 1274 aa23.17■■□□□ 1.3
SDF4-206ENST00000478938 UTP4Q969X6 686 aaKnown RBP23.17■■□□□ 1.3
SDF4-206ENST00000478938 DTNBP1Q96EV8 351 aa23.17■■□□□ 1.3
SDF4-206ENST00000478938 RBM17Q96I25 401 aaKnown RBP23.17■■□□□ 1.3
SDF4-206ENST00000478938 A0A087WZG4 1122 aa23.17■■□□□ 1.3
SDF4-206ENST00000478938 PSMA7O14818 248 aa23.17■■□□□ 1.3
SDF4-206ENST00000478938 ATP6V1G1O75348 118 aa23.17■■□□□ 1.3
SDF4-206ENST00000478938 WFS1O76024 890 aa23.17■■□□□ 1.3
SDF4-206ENST00000478938 NLRP6P59044 892 aa23.17■■□□□ 1.3
SDF4-206ENST00000478938 IFI35P80217 286 aaPredicted RBP23.17■■□□□ 1.3
SDF4-206ENST00000478938 FIGNQ5HY92 759 aa23.17■■□□□ 1.3
SDF4-206ENST00000478938 ERGIC2Q96RQ1 377 aa23.17■■□□□ 1.3
SDF4-206ENST00000478938 ZWILCHQ9H900 591 aa23.17■■□□□ 1.3
SDF4-206ENST00000478938 TULP1O00294 542 aaPredicted RBP23.16■■□□□ 1.3
SDF4-206ENST00000478938 KCNK3O14649 394 aa23.16■■□□□ 1.3
SDF4-206ENST00000478938 CALB2P22676 271 aa23.16■■□□□ 1.3
SDF4-206ENST00000478938 ACBD5Q5T8D3 534 aaPredicted RBP23.16■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms