RNA–Protein interactions for RNA: ENST00000477970.1

PTPRF-212, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 3,321 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-212ENST00000477970 SLC35F6Q8N357 371 aa13.56□□□□□ -0.24
PTPRF-212ENST00000477970 ARHGEF10LQ9HCE6 1279 aa13.56□□□□□ -0.24
PTPRF-212ENST00000477970 TMOD2Q9NZR1 351 aa13.56□□□□□ -0.24
PTPRF-212ENST00000477970 TMX2Q9Y320 296 aa13.56□□□□□ -0.24
PTPRF-212ENST00000477970 FZD9O00144 591 aa13.55□□□□□ -0.24
PTPRF-212ENST00000477970 CYP11B2P19099 503 aa13.55□□□□□ -0.24
PTPRF-212ENST00000477970 SHROOM1Q2M3G4 852 aaPredicted RBP13.55□□□□□ -0.24
PTPRF-212ENST00000477970 EDRF1Q3B7T1 1238 aa13.55□□□□□ -0.24
PTPRF-212ENST00000477970 SLF1Q9BQI6 1058 aa13.55□□□□□ -0.24
PTPRF-212ENST00000477970 POLR3CQ9BUI4 534 aaPredicted RBP13.55□□□□□ -0.24
PTPRF-212ENST00000477970 IRX2Q9BZI1 471 aaPredicted RBP13.55□□□□□ -0.24
PTPRF-212ENST00000477970 TSGA10Q9BZW7 698 aa13.55□□□□□ -0.24
PTPRF-212ENST00000477970 DEFB129Q9H1M3 183 aa13.55□□□□□ -0.24
PTPRF-212ENST00000477970 A0A0U1RQJ8 604 aa13.55□□□□□ -0.24
PTPRF-212ENST00000477970 OPLAHO14841 1288 aa13.55□□□□□ -0.24
PTPRF-212ENST00000477970 PPIP5K2O43314 1243 aa13.55□□□□□ -0.24
PTPRF-212ENST00000477970 GH2P01242 217 aa13.55□□□□□ -0.24
PTPRF-212ENST00000477970 SLURP2P0DP57 97 aa13.55□□□□□ -0.24
PTPRF-212ENST00000477970 MUTP22033 750 aa13.55□□□□□ -0.24
PTPRF-212ENST00000477970 KIF4BQ2VIQ3 1234 aa13.55□□□□□ -0.24
PTPRF-212ENST00000477970 CREBRFQ8IUR6 639 aa13.55□□□□□ -0.24
PTPRF-212ENST00000477970 ATRIPQ8WXE1 791 aa13.55□□□□□ -0.24
PTPRF-212ENST00000477970 HPS3Q969F9 1004 aa13.55□□□□□ -0.24
PTPRF-212ENST00000477970 CSRNP1Q96S65 589 aa13.55□□□□□ -0.24
PTPRF-212ENST00000477970 P2RX7Q99572 595 aaKnown RBP13.55□□□□□ -0.24
PTPRF-212ENST00000477970 GLTPD2A6NH11 291 aa13.54□□□□□ -0.24
PTPRF-212ENST00000477970 SPDYE3A6NKU9 549 aa13.54□□□□□ -0.24
PTPRF-212ENST00000477970 TULP1O00294 542 aaPredicted RBP13.54□□□□□ -0.24
PTPRF-212ENST00000477970 GDF11O95390 407 aa13.54□□□□□ -0.24
PTPRF-212ENST00000477970 FAM193AP78312 1265 aa13.54□□□□□ -0.24
PTPRF-212ENST00000477970 JAG1P78504 1218 aa13.54□□□□□ -0.24
PTPRF-212ENST00000477970 KRT222Q8N1A0 295 aa13.54□□□□□ -0.24
PTPRF-212ENST00000477970 SYN2Q92777 582 aaPredicted RBP13.54□□□□□ -0.24
PTPRF-212ENST00000477970 NUCKS1Q9H1E3 243 aaKnown RBP13.54□□□□□ -0.24
PTPRF-212ENST00000477970 NHEJ1Q9H9Q4 299 aaPredicted RBP13.54□□□□□ -0.24
PTPRF-212ENST00000477970 GOPCQ9HD26 462 aa13.54□□□□□ -0.24
PTPRF-212ENST00000477970 AGPAT5Q9NUQ2 364 aa13.54□□□□□ -0.24
PTPRF-212ENST00000477970 HDAC9Q9UKV0 1011 aa13.54□□□□□ -0.24
PTPRF-212ENST00000477970 KIAA1024Q9UPX6 916 aa13.54□□□□□ -0.24
PTPRF-212ENST00000477970 COL4A3BPQ9Y5P4 624 aa13.54□□□□□ -0.24
PTPRF-212ENST00000477970 CNTNAP1P78357 1384 aa13.54□□□□□ -0.24
PTPRF-212ENST00000477970 TUBBP07437 444 aa13.54□□□□□ -0.24
PTPRF-212ENST00000477970 MAP3K10Q02779 954 aa13.54□□□□□ -0.24
PTPRF-212ENST00000477970 RRP1BQ14684 758 aaKnown RBP13.54□□□□□ -0.24
PTPRF-212ENST00000477970 SPDYE2Q495Y8 402 aa13.54□□□□□ -0.24
PTPRF-212ENST00000477970 SYT2Q8N9I0 419 aaPredicted RBP13.54□□□□□ -0.24
PTPRF-212ENST00000477970 MSANTD4Q8NCY6 345 aa13.54□□□□□ -0.24
PTPRF-212ENST00000477970 RANBP17Q9H2T7 1088 aaKnown RBP13.54□□□□□ -0.24
PTPRF-212ENST00000477970 KCTD10Q9H3F6 313 aa13.54□□□□□ -0.24
PTPRF-212ENST00000477970 XPO5Q9HAV4 1204 aaKnown RBP eCLIP13.54□□□□□ -0.24
PTPRF-212ENST00000477970 PRR12Q9ULL5 1215 aa13.54□□□□□ -0.24
PTPRF-212ENST00000477970 MED24O75448 989 aa13.54□□□□□ -0.24
PTPRF-212ENST00000477970 VAV3Q9UKW4 847 aa13.54□□□□□ -0.24
PTPRF-212ENST00000477970 FAM184BQ9ULE4 1060 aa13.54□□□□□ -0.24
PTPRF-212ENST00000477970 A0A1W2PRG0 241 aa13.53□□□□□ -0.24
PTPRF-212ENST00000477970 ANO9A1A5B4 782 aa13.53□□□□□ -0.24
PTPRF-212ENST00000477970 KRT86O43790 486 aa13.53□□□□□ -0.24
PTPRF-212ENST00000477970 IDEP14735 1019 aa13.53□□□□□ -0.24
PTPRF-212ENST00000477970 STAT2P52630 851 aa13.53□□□□□ -0.24
PTPRF-212ENST00000477970 CHMP4BP1P59074 171 aa13.53□□□□□ -0.24
PTPRF-212ENST00000477970 GABPB1Q06547 395 aaPredicted RBP13.53□□□□□ -0.24
PTPRF-212ENST00000477970 FAM83AQ86UY5 434 aa13.53□□□□□ -0.24
PTPRF-212ENST00000477970 L3MBTL3Q96JM7 780 aaPredicted RBP13.53□□□□□ -0.24
PTPRF-212ENST00000477970 E9PMD0 336 aa13.53□□□□□ -0.24
PTPRF-212ENST00000477970 BRD3Q15059 726 aa13.53□□□□□ -0.24
PTPRF-212ENST00000477970 BMT2Q1RMZ1 405 aa13.53□□□□□ -0.24
PTPRF-212ENST00000477970 PAPD7Q5XG87 772 aaKnown RBP13.53□□□□□ -0.24
PTPRF-212ENST00000477970 TMCO3Q6UWJ1 677 aa13.53□□□□□ -0.24
PTPRF-212ENST00000477970 TRAPPC11Q7Z392 1133 aa13.53□□□□□ -0.24
PTPRF-212ENST00000477970 GPBP1Q86WP2 473 aa13.53□□□□□ -0.24
PTPRF-212ENST00000477970 HNRNPLLQ8WVV9 542 aaKnown RBP13.53□□□□□ -0.24
PTPRF-212ENST00000477970 ZNF219Q9P2Y4 722 aaPredicted RBP13.53□□□□□ -0.24
PTPRF-212ENST00000477970 ZNF70Q9UC06 446 aaPredicted RBP13.53□□□□□ -0.24
PTPRF-212ENST00000477970 RAB21Q9UL25 225 aa13.53□□□□□ -0.24
PTPRF-212ENST00000477970 FHOD1Q9Y613 1164 aa13.53□□□□□ -0.24
PTPRF-212ENST00000477970 POTEB3A0JP26 581 aa13.52□□□□□ -0.24
PTPRF-212ENST00000477970 POTECB2RU33 542 aa13.52□□□□□ -0.24
PTPRF-212ENST00000477970 PES1O00541 588 aaKnown RBP13.52□□□□□ -0.24
PTPRF-212ENST00000477970 SPATA31C1P0DKV0 1188 aa13.52□□□□□ -0.24
PTPRF-212ENST00000477970 CBX1P83916 185 aa13.52□□□□□ -0.24
PTPRF-212ENST00000477970 MAPK8IP2Q13387 824 aaPredicted RBP13.52□□□□□ -0.24
PTPRF-212ENST00000477970 ARSHQ5FYA8 562 aa13.52□□□□□ -0.24
PTPRF-212ENST00000477970 POTEBQ6S5H4 581 aa13.52□□□□□ -0.24
PTPRF-212ENST00000477970 EPM2AIP1Q7L775 607 aaPredicted RBP13.52□□□□□ -0.24
PTPRF-212ENST00000477970 CATSPER3Q86XQ3 398 aa13.52□□□□□ -0.24
PTPRF-212ENST00000477970 MSL3Q8N5Y2 521 aaKnown RBP13.52□□□□□ -0.24
PTPRF-212ENST00000477970 TRAF3IP3Q9Y228 551 aa13.52□□□□□ -0.24
PTPRF-212ENST00000477970 KLK7P49862 253 aa13.52□□□□□ -0.24
PTPRF-212ENST00000477970 VAV2P52735 878 aa13.52□□□□□ -0.24
PTPRF-212ENST00000477970 FAM160B2Q86V87 743 aa13.52□□□□□ -0.24
PTPRF-212ENST00000477970 AGBL3Q8NEM8 1001 aa13.52□□□□□ -0.24
PTPRF-212ENST00000477970 ZBED3Q96IU2 234 aaPredicted RBP13.52□□□□□ -0.24
PTPRF-212ENST00000477970 SH2D4AQ9H788 454 aa13.52□□□□□ -0.24
PTPRF-212ENST00000477970 IGLV3-22A0A075B6J6 115 aa13.52□□□□□ -0.25
PTPRF-212ENST00000477970 SSU72P8A0A1W2PR75 194 aa13.52□□□□□ -0.25
PTPRF-212ENST00000477970 CCDC151A5D8V7 595 aa13.52□□□□□ -0.25
PTPRF-212ENST00000477970 FAM86B1E9PN63 330 aa13.52□□□□□ -0.25
PTPRF-212ENST00000477970 FAM86B2P0C5J1 330 aa13.52□□□□□ -0.25
PTPRF-212ENST00000477970 UTP14CQ5TAP6 766 aaKnown RBP13.52□□□□□ -0.25
PTPRF-212ENST00000477970 TRIM59Q8IWR1 403 aa13.52□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms