RNA–Protein interactions for RNA: ENST00000473565.5

CLK1-210, Transcript of CDC like kinase 1, humanhuman

TSL 1 (best)

Gene CLK1, Length 3,208 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-210ENST00000473565 NR1I3Q14994 352 aa6.95□□□□□ -1.3
CLK1-210ENST00000473565 HYIQ5T013 277 aa6.95□□□□□ -1.3
CLK1-210ENST00000473565 TTI2Q6NXR4 508 aa6.95□□□□□ -1.3
CLK1-210ENST00000473565 RNF207Q6ZRF8 634 aa6.95□□□□□ -1.3
CLK1-210ENST00000473565 UNC13DQ70J99 1090 aa6.95□□□□□ -1.3
CLK1-210ENST00000473565 OTOP1Q7RTM1 612 aa6.95□□□□□ -1.3
CLK1-210ENST00000473565 REPS2Q8NFH8 660 aa6.95□□□□□ -1.3
CLK1-210ENST00000473565 CDCA5Q96FF9 252 aa6.95□□□□□ -1.3
CLK1-210ENST00000473565 FAM20AQ96MK3 541 aa6.95□□□□□ -1.3
CLK1-210ENST00000473565 SH2D3AQ9BRG2 576 aa6.95□□□□□ -1.3
CLK1-210ENST00000473565 BHMT2Q9H2M3 363 aa6.95□□□□□ -1.3
CLK1-210ENST00000473565 UNC45AQ9H3U1 944 aa6.95□□□□□ -1.3
CLK1-210ENST00000473565 GINM1Q9NU53 330 aa6.95□□□□□ -1.3
CLK1-210ENST00000473565 ZNF214Q9UL59 606 aaPredicted RBP6.95□□□□□ -1.3
CLK1-210ENST00000473565 PTPRFP10586 1907 aa6.95□□□□□ -1.3
CLK1-210ENST00000473565 KDM3AQ9Y4C1 1321 aa6.95□□□□□ -1.3
CLK1-210ENST00000473565 A0A1B0GTH6 734 aa6.95□□□□□ -1.3
CLK1-210ENST00000473565 SPDYE16A6NNV3 312 aaPredicted RBP6.95□□□□□ -1.3
CLK1-210ENST00000473565 IPO5O00410 1097 aaKnown RBP6.95□□□□□ -1.3
CLK1-210ENST00000473565 PES1O00541 588 aaKnown RBP6.95□□□□□ -1.3
CLK1-210ENST00000473565 TBX3O15119 743 aa6.95□□□□□ -1.3
CLK1-210ENST00000473565 MYL1P05976 194 aa6.95□□□□□ -1.3
CLK1-210ENST00000473565 TPM3P06753 285 aa6.95□□□□□ -1.3
CLK1-210ENST00000473565 DSG3P32926 999 aa6.95□□□□□ -1.3
CLK1-210ENST00000473565 SLC12A3P55017 1021 aa6.95□□□□□ -1.3
CLK1-210ENST00000473565 DNTTIP2Q5QJE6 756 aaKnown RBP6.95□□□□□ -1.3
CLK1-210ENST00000473565 MCTP2Q6DN12 878 aa6.95□□□□□ -1.3
CLK1-210ENST00000473565 GADL1Q6ZQY3 521 aa6.95□□□□□ -1.3
CLK1-210ENST00000473565 CATSPERGQ6ZRH7 1159 aa6.95□□□□□ -1.3
CLK1-210ENST00000473565 NELFCDQ8IXH7 590 aa6.95□□□□□ -1.3
CLK1-210ENST00000473565 BANK1Q8NDB2 785 aa6.95□□□□□ -1.3
CLK1-210ENST00000473565 SLC5A5Q92911 643 aa6.95□□□□□ -1.3
CLK1-210ENST00000473565 P2RX5Q93086 422 aa6.95□□□□□ -1.3
CLK1-210ENST00000473565 RMDN3Q96TC7 470 aa6.95□□□□□ -1.3
CLK1-210ENST00000473565 MXRA8Q9BRK3 442 aa6.95□□□□□ -1.3
CLK1-210ENST00000473565 RUSC1Q9BVN2 902 aa6.95□□□□□ -1.3
CLK1-210ENST00000473565 NT5C3AQ9H0P0 336 aa6.95□□□□□ -1.3
CLK1-210ENST00000473565 ZNF408Q9H9D4 720 aa6.95□□□□□ -1.3
CLK1-210ENST00000473565 KCNH7Q9NS40 1196 aa6.95□□□□□ -1.3
CLK1-210ENST00000473565 ADD3Q9UEY8 706 aaKnown RBP6.95□□□□□ -1.3
CLK1-210ENST00000473565 TELO2Q9Y4R8 837 aa6.95□□□□□ -1.3
CLK1-210ENST00000473565 PPP2R3BQ9Y5P8 575 aa6.95□□□□□ -1.3
CLK1-210ENST00000473565 RBBP6Q7Z6E9 1792 aaKnown RBP6.95□□□□□ -1.3
CLK1-210ENST00000473565 PITPNM2Q9BZ72 1349 aa6.94□□□□□ -1.3
CLK1-210ENST00000473565 SFI1A8K8P3 1242 aa6.94□□□□□ -1.3
CLK1-210ENST00000473565 N4BP3O15049 544 aa6.94□□□□□ -1.3
CLK1-210ENST00000473565 ATP9AO75110 1047 aa6.94□□□□□ -1.3
CLK1-210ENST00000473565 SFPQP23246 707 aaKnown RBP eCLIP6.94□□□□□ -1.3
CLK1-210ENST00000473565 RPA1P27694 616 aa6.94□□□□□ -1.3
CLK1-210ENST00000473565 COPB1P53618 953 aaKnown RBP6.94□□□□□ -1.3
CLK1-210ENST00000473565 ITGB3BPQ13352 177 aaPredicted RBP6.94□□□□□ -1.3
CLK1-210ENST00000473565 STIM1Q13586 685 aa6.94□□□□□ -1.3
CLK1-210ENST00000473565 COG2Q14746 738 aa6.94□□□□□ -1.3
CLK1-210ENST00000473565 TCP11X2Q5H9J9 407 aa6.94□□□□□ -1.3
CLK1-210ENST00000473565 HAUS3Q68CZ6 603 aa6.94□□□□□ -1.3
CLK1-210ENST00000473565 DPY19L2Q6NUT2 758 aa6.94□□□□□ -1.3
CLK1-210ENST00000473565 CSGALNACT2Q8N6G5 542 aa6.94□□□□□ -1.3
CLK1-210ENST00000473565 ERMNQ8TAM6 284 aa6.94□□□□□ -1.3
CLK1-210ENST00000473565 CCDC47Q96A33 483 aaKnown RBP6.94□□□□□ -1.3
CLK1-210ENST00000473565 PANK4Q9NVE7 773 aa6.94□□□□□ -1.3
CLK1-210ENST00000473565 CSADQ9Y600 493 aa6.94□□□□□ -1.3
CLK1-210ENST00000473565 RPTORQ8N122 1335 aa6.94□□□□□ -1.3
CLK1-210ENST00000473565 DOCK5Q9H7D0 1870 aa6.94□□□□□ -1.3
CLK1-210ENST00000473565 TESPA1A2RU30 521 aaPredicted RBP6.94□□□□□ -1.3
CLK1-210ENST00000473565 TMEM150BA6NC51 233 aa6.94□□□□□ -1.3
CLK1-210ENST00000473565 TRAF5O00463 557 aa6.94□□□□□ -1.3
CLK1-210ENST00000473565 PPP1R12BO60237 982 aaPredicted RBP6.94□□□□□ -1.3
CLK1-210ENST00000473565 SLITRK3O94933 977 aa6.94□□□□□ -1.3
CLK1-210ENST00000473565 CCNE1P24864 410 aa6.94□□□□□ -1.3
CLK1-210ENST00000473565 FSTL1Q12841 308 aa6.94□□□□□ -1.3
CLK1-210ENST00000473565 PGM5Q15124 567 aa6.94□□□□□ -1.3
CLK1-210ENST00000473565 TKFCQ3LXA3 575 aa6.94□□□□□ -1.3
CLK1-210ENST00000473565 HERC4Q5GLZ8 1057 aaPredicted RBP6.94□□□□□ -1.3
CLK1-210ENST00000473565 NOL9Q5SY16 702 aaKnown RBP6.94□□□□□ -1.3
CLK1-210ENST00000473565 CNNM4Q6P4Q7 775 aa6.94□□□□□ -1.3
CLK1-210ENST00000473565 MCF2L2Q86YR7 1114 aa6.94□□□□□ -1.3
CLK1-210ENST00000473565 C12orf42Q96LP6 360 aa6.94□□□□□ -1.3
CLK1-210ENST00000473565 C16orf45Q96MC5 204 aaPredicted RBP6.94□□□□□ -1.3
CLK1-210ENST00000473565 IKZF4Q9H2S9 585 aa6.94□□□□□ -1.3
CLK1-210ENST00000473565 BMP2KQ9NSY1 1161 aaPredicted RBP6.94□□□□□ -1.3
CLK1-210ENST00000473565 R3HCC1Q9Y3T6 440 aaKnown RBP6.94□□□□□ -1.3
CLK1-210ENST00000473565 CENPFP49454 3210 aa6.94□□□□□ -1.3
CLK1-210ENST00000473565 C19orf81C9J6K1 198 aa6.93□□□□□ -1.3
CLK1-210ENST00000473565 RNF225M0QZC1 329 aaPredicted RBP6.93□□□□□ -1.3
CLK1-210ENST00000473565 CASP5P51878 434 aa6.93□□□□□ -1.3
CLK1-210ENST00000473565 EHHADHQ08426 723 aa6.93□□□□□ -1.3
CLK1-210ENST00000473565 ARHGEF16Q5VV41 709 aa6.93□□□□□ -1.3
CLK1-210ENST00000473565 MAP1SQ66K74 1059 aaPredicted RBP6.93□□□□□ -1.3
CLK1-210ENST00000473565 SPECC1LQ69YQ0 1117 aa6.93□□□□□ -1.3
CLK1-210ENST00000473565 HSD17B14Q9BPX1 270 aa6.93□□□□□ -1.3
CLK1-210ENST00000473565 REEP2Q9BRK0 252 aa6.93□□□□□ -1.3
CLK1-210ENST00000473565 PDCD2LQ9BRP1 358 aa6.93□□□□□ -1.3
CLK1-210ENST00000473565 PAGR1Q9BTK6 254 aa6.93□□□□□ -1.3
CLK1-210ENST00000473565 EHMT1Q9H9B1 1298 aa6.93□□□□□ -1.3
CLK1-210ENST00000473565 PXMP2Q9NR77 195 aa6.93□□□□□ -1.3
CLK1-210ENST00000473565 IMPACTQ9P2X3 320 aa6.93□□□□□ -1.3
CLK1-210ENST00000473565 DNM3Q9UQ16 869 aa6.93□□□□□ -1.3
CLK1-210ENST00000473565 CLEC11AQ9Y240 323 aa6.93□□□□□ -1.3
CLK1-210ENST00000473565 PVALEFA0A1B0GWK0 134 aa6.93□□□□□ -1.3
CLK1-210ENST00000473565 OFD1O75665 1012 aa6.93□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms