RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 HERC6Q8IVU3 1022 aa21.65■■□□□ 1.06
CCDC88B-206ENST00000473405 CUL5Q93034 780 aa21.65■■□□□ 1.06
CCDC88B-206ENST00000473405 TELO2Q9Y4R8 837 aa21.65■■□□□ 1.06
CCDC88B-206ENST00000473405 H3BRB1 525 aa21.64■■□□□ 1.05
CCDC88B-206ENST00000473405 ARHGEF15O94989 841 aa21.64■■□□□ 1.05
CCDC88B-206ENST00000473405 WDR5P61964 334 aaKnown RBP21.64■■□□□ 1.05
CCDC88B-206ENST00000473405 ZNF618Q5T7W0 954 aa21.64■■□□□ 1.05
CCDC88B-206ENST00000473405 XRRA1Q6P2D8 792 aa21.64■■□□□ 1.05
CCDC88B-206ENST00000473405 CYFIP1Q7L576 1253 aa21.64■■□□□ 1.05
CCDC88B-206ENST00000473405 SERINC5Q86VE9 423 aa21.64■■□□□ 1.05
CCDC88B-206ENST00000473405 FANCBQ8NB91 859 aa21.64■■□□□ 1.05
CCDC88B-206ENST00000473405 GPR20Q99678 358 aa21.64■■□□□ 1.05
CCDC88B-206ENST00000473405 TUT1Q9H6E5 874 aaKnown RBP21.64■■□□□ 1.05
CCDC88B-206ENST00000473405 PRDM6Q9NQX0 595 aa21.64■■□□□ 1.05
CCDC88B-206ENST00000473405 SIP14410 1827 aa21.64■■□□□ 1.05
CCDC88B-206ENST00000473405 NCOR1O75376 2440 aa21.64■■□□□ 1.05
CCDC88B-206ENST00000473405 PRRC2BQ5JSZ5 2229 aaKnown RBP21.63■■□□□ 1.05
CCDC88B-206ENST00000473405 PARNO95453 639 aaKnown RBP21.63■■□□□ 1.05
CCDC88B-206ENST00000473405 NEDD9Q14511 834 aa21.63■■□□□ 1.05
CCDC88B-206ENST00000473405 UBE2SQ16763 222 aa21.63■■□□□ 1.05
CCDC88B-206ENST00000473405 RNF20Q5VTR2 975 aa21.63■■□□□ 1.05
CCDC88B-206ENST00000473405 CNKSR3Q6P9H4 555 aa21.63■■□□□ 1.05
CCDC88B-206ENST00000473405 APOA5Q6Q788 366 aa21.63■■□□□ 1.05
CCDC88B-206ENST00000473405 RASEFQ8IZ41 740 aa21.63■■□□□ 1.05
CCDC88B-206ENST00000473405 CCDC82Q8N4S0 544 aa21.63■■□□□ 1.05
CCDC88B-206ENST00000473405 PSTPIP2Q9H939 334 aa21.63■■□□□ 1.05
CCDC88B-206ENST00000473405 CNTNAP5Q8WYK1 1306 aa21.62■■□□□ 1.05
CCDC88B-206ENST00000473405 NOP56O00567 594 aaKnown RBP21.62■■□□□ 1.05
CCDC88B-206ENST00000473405 SMIM10L2AP0DMW4 78 aa21.62■■□□□ 1.05
CCDC88B-206ENST00000473405 SMIM10L2BP0DMW5 78 aa21.62■■□□□ 1.05
CCDC88B-206ENST00000473405 EXOSC10Q01780 885 aaKnown RBP21.62■■□□□ 1.05
CCDC88B-206ENST00000473405 ADCK5Q3MIX3 580 aa21.62■■□□□ 1.05
CCDC88B-206ENST00000473405 TRIM50Q86XT4 487 aa21.62■■□□□ 1.05
CCDC88B-206ENST00000473405 PPM1EQ8WY54 764 aa21.62■■□□□ 1.05
CCDC88B-206ENST00000473405 TCEANC2Q96MN5 208 aa21.62■■□□□ 1.05
CCDC88B-206ENST00000473405 NEK1Q96PY6 1258 aa21.62■■□□□ 1.05
CCDC88B-206ENST00000473405 SENP7Q9BQF6 1050 aa21.62■■□□□ 1.05
CCDC88B-206ENST00000473405 CDC45O75419 566 aa21.61■■□□□ 1.05
CCDC88B-206ENST00000473405 IGFBP4P22692 258 aa21.61■■□□□ 1.05
CCDC88B-206ENST00000473405 KCNJ6P48051 423 aa21.61■■□□□ 1.05
CCDC88B-206ENST00000473405 DEFB103AP81534 67 aa21.61■■□□□ 1.05
CCDC88B-206ENST00000473405 TSGA10IPQ3SY00 556 aa21.61■■□□□ 1.05
CCDC88B-206ENST00000473405 TMCO2Q7Z6W1 182 aaPredicted RBP21.61■■□□□ 1.05
CCDC88B-206ENST00000473405 USP26Q9BXU7 913 aa21.61■■□□□ 1.05
CCDC88B-206ENST00000473405 BRPF3Q9ULD4 1205 aa21.61■■□□□ 1.05
CCDC88B-206ENST00000473405 KAT6AQ92794 2004 aa21.6■■□□□ 1.05
CCDC88B-206ENST00000473405 C17orf102A2RUQ5 167 aa21.6■■□□□ 1.05
CCDC88B-206ENST00000473405 EPOPA6NHQ4 379 aa21.6■■□□□ 1.05
CCDC88B-206ENST00000473405 ITGB5P18084 799 aa21.6■■□□□ 1.05
CCDC88B-206ENST00000473405 TAP1Q03518 808 aa21.6■■□□□ 1.05
CCDC88B-206ENST00000473405 FUT2Q10981 343 aa21.6■■□□□ 1.05
CCDC88B-206ENST00000473405 HEATR3Q7Z4Q2 680 aa21.6■■□□□ 1.05
CCDC88B-206ENST00000473405 ATP6V0A1Q93050 837 aa21.6■■□□□ 1.05
CCDC88B-206ENST00000473405 GPRASP2Q96D09 838 aa21.6■■□□□ 1.05
CCDC88B-206ENST00000473405 TREHO43280 583 aa21.59■■□□□ 1.05
CCDC88B-206ENST00000473405 ATP9AO75110 1047 aa21.59■■□□□ 1.05
CCDC88B-206ENST00000473405 KCNA2P16389 499 aa21.59■■□□□ 1.05
CCDC88B-206ENST00000473405 THPOP40225 353 aa21.59■■□□□ 1.05
CCDC88B-206ENST00000473405 MKRN4PQ13434 485 aaPredicted RBP21.59■■□□□ 1.05
CCDC88B-206ENST00000473405 CCDC85BQ15834 202 aaPredicted RBP21.59■■□□□ 1.05
CCDC88B-206ENST00000473405 WWC2Q6AWC2 1192 aa21.59■■□□□ 1.05
CCDC88B-206ENST00000473405 TYW1BQ6NUM6 668 aa21.59■■□□□ 1.05
CCDC88B-206ENST00000473405 DHX32Q7L7V1 743 aaKnown RBP21.59■■□□□ 1.05
CCDC88B-206ENST00000473405 SPRED2Q7Z698 418 aa21.59■■□□□ 1.05
CCDC88B-206ENST00000473405 RNPEPQ9H4A4 650 aa21.59■■□□□ 1.05
CCDC88B-206ENST00000473405 CERS4Q9HA82 394 aa21.59■■□□□ 1.05
CCDC88B-206ENST00000473405 EMSYQ7Z589 1322 aa21.58■■□□□ 1.05
CCDC88B-206ENST00000473405 LCHNA4D1U4 455 aa21.58■■□□□ 1.05
CCDC88B-206ENST00000473405 RFXAPO00287 272 aa21.58■■□□□ 1.05
CCDC88B-206ENST00000473405 SP4Q02446 784 aa21.58■■□□□ 1.05
CCDC88B-206ENST00000473405 NLRX1Q86UT6 975 aa21.58■■□□□ 1.05
CCDC88B-206ENST00000473405 RBM28Q9NW13 759 aaKnown RBP21.58■■□□□ 1.05
CCDC88B-206ENST00000473405 UBIAD1Q9Y5Z9 338 aa21.58■■□□□ 1.05
CCDC88B-206ENST00000473405 ABHD14A-ACY1A0A1B0GW23 586 aa21.57■■□□□ 1.04
CCDC88B-206ENST00000473405 RSPH10B2B2RC85 870 aa21.57■■□□□ 1.04
CCDC88B-206ENST00000473405 KIF28PB7ZC32 967 aa21.57■■□□□ 1.04
CCDC88B-206ENST00000473405 TLL1O43897 1013 aa21.57■■□□□ 1.04
CCDC88B-206ENST00000473405 LGR5O75473 907 aa21.57■■□□□ 1.04
CCDC88B-206ENST00000473405 RSPH10BP0C881 870 aa21.57■■□□□ 1.04
CCDC88B-206ENST00000473405 ADAM17P78536 824 aa21.57■■□□□ 1.04
CCDC88B-206ENST00000473405 SYNE3Q6ZMZ3 975 aa21.57■■□□□ 1.04
CCDC88B-206ENST00000473405 GIMAP8Q8ND71 665 aaPredicted RBP21.57■■□□□ 1.04
CCDC88B-206ENST00000473405 SETD4Q9NVD3 440 aa21.57■■□□□ 1.04
CCDC88B-206ENST00000473405 ZNF215Q9UL58 517 aaPredicted RBP21.57■■□□□ 1.04
CCDC88B-206ENST00000473405 PCDHA6Q9UN73 950 aa21.57■■□□□ 1.04
CCDC88B-206ENST00000473405 PCDHA8Q9Y5H6 950 aa21.57■■□□□ 1.04
CCDC88B-206ENST00000473405 SPDYE3A6NKU9 549 aa21.56■■□□□ 1.04
CCDC88B-206ENST00000473405 ZBTB43O43298 467 aa21.56■■□□□ 1.04
CCDC88B-206ENST00000473405 MTMR1Q13613 665 aa21.56■■□□□ 1.04
CCDC88B-206ENST00000473405 RTN1Q16799 776 aa21.56■■□□□ 1.04
CCDC88B-206ENST00000473405 TJAP1Q5JTD0 557 aa21.56■■□□□ 1.04
CCDC88B-206ENST00000473405 UTP14CQ5TAP6 766 aaKnown RBP21.56■■□□□ 1.04
CCDC88B-206ENST00000473405 LMBR1Q8WVP7 490 aa21.56■■□□□ 1.04
CCDC88B-206ENST00000473405 CDHR1Q96JP9 859 aa21.56■■□□□ 1.04
CCDC88B-206ENST00000473405 OSBPL7Q9BZF2 842 aa21.56■■□□□ 1.04
CCDC88B-206ENST00000473405 FAM217BQ9NTX9 383 aaPredicted RBP21.56■■□□□ 1.04
CCDC88B-206ENST00000473405 THEGQ9P2T0 379 aa21.56■■□□□ 1.04
CCDC88B-206ENST00000473405 EFCAB14O75071 495 aa21.55■■□□□ 1.04
CCDC88B-206ENST00000473405 GJB5O95377 273 aa21.55■■□□□ 1.04
CCDC88B-206ENST00000473405 POU3F3P20264 500 aaPredicted RBP21.55■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms