RNA–Protein interactions for RNA: ENST00000472044.1

PTCD3-209, Transcript of pentatricopeptide repeat domain 3, human

TSL 3

Gene PTCD3, Length 293 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-209	ENST00000472044	DDX42	Q86XP3	938 aa	Known RBP eCLIP	5.38	□□□□□ -1.55
PTCD3-209	ENST00000472044	RPUSD2	Q8IZ73	545 aa	Known RBP	5.38	□□□□□ -1.55
PTCD3-209	ENST00000472044	CISD2	Q8N5K1	135 aa	Known RBP	5.38	□□□□□ -1.55
PTCD3-209	ENST00000472044	SMC1B	Q8NDV3	1235 aa		5.38	□□□□□ -1.55
PTCD3-209	ENST00000472044	TSPAN17	Q96FV3	270 aa		5.38	□□□□□ -1.55
PTCD3-209	ENST00000472044	AP5M1	Q9H0R1	490 aa		5.38	□□□□□ -1.55
PTCD3-209	ENST00000472044	ASH2L	Q9UBL3	628 aa		5.38	□□□□□ -1.55
PTCD3-209	ENST00000472044	MCM8	Q9UJA3	840 aa		5.38	□□□□□ -1.55
PTCD3-209	ENST00000472044	SRPK3	Q9UPE1	567 aa		5.38	□□□□□ -1.55
PTCD3-209	ENST00000472044	ZKSCAN5	Q9Y2L8	839 aa		5.38	□□□□□ -1.55
PTCD3-209	ENST00000472044	SLC12A8	A0AV02	714 aa		5.37	□□□□□ -1.55
PTCD3-209	ENST00000472044	PTPDC1	A2A3K4	754 aa		5.37	□□□□□ -1.55
PTCD3-209	ENST00000472044	OR14I1	A6ND48	311 aa		5.37	□□□□□ -1.55
PTCD3-209	ENST00000472044	MAN2B1	O00754	1011 aa		5.37	□□□□□ -1.55
PTCD3-209	ENST00000472044	ABLIM1	O14639	778 aa		5.37	□□□□□ -1.55
PTCD3-209	ENST00000472044	GAS7	O60861	476 aa		5.37	□□□□□ -1.55
PTCD3-209	ENST00000472044	PAPLN	O95428	1278 aa		5.37	□□□□□ -1.55
PTCD3-209	ENST00000472044	JUNB	P17275	347 aa	Predicted RBP	5.37	□□□□□ -1.55
PTCD3-209	ENST00000472044	PML	P29590	882 aa		5.37	□□□□□ -1.55
PTCD3-209	ENST00000472044	MAPKAPK2	P49137	400 aa		5.37	□□□□□ -1.55
PTCD3-209	ENST00000472044	FIGN	Q5HY92	759 aa		5.37	□□□□□ -1.55
PTCD3-209	ENST00000472044	ADGRF1	Q5T601	910 aa		5.37	□□□□□ -1.55
PTCD3-209	ENST00000472044	KCTD1	Q719H9	257 aa		5.37	□□□□□ -1.55
PTCD3-209	ENST00000472044	NOSTRIN	Q8IVI9	506 aa		5.37	□□□□□ -1.55
PTCD3-209	ENST00000472044	TRIM48	Q8IWZ4	208 aa		5.37	□□□□□ -1.55
PTCD3-209	ENST00000472044	NXPE1	Q8N323	547 aa		5.37	□□□□□ -1.55
PTCD3-209	ENST00000472044	TTC1	Q99614	292 aa		5.37	□□□□□ -1.55
PTCD3-209	ENST00000472044	BOC	Q9BWV1	1114 aa		5.37	□□□□□ -1.55
PTCD3-209	ENST00000472044	IFT22	Q9H7X7	185 aa		5.37	□□□□□ -1.55
PTCD3-209	ENST00000472044	XPO5	Q9HAV4	1204 aa	Known RBP eCLIP	5.37	□□□□□ -1.55
PTCD3-209	ENST00000472044	KLHL14	Q9P2G3	628 aa		5.37	□□□□□ -1.55
PTCD3-209	ENST00000472044	PHLDB1	Q86UU1	1377 aa		5.37	□□□□□ -1.55
PTCD3-209	ENST00000472044	TCRBV5S2	A0A599	114 aa		5.36	□□□□□ -1.55
PTCD3-209	ENST00000472044	ZC3H12D	A2A288	527 aa	Known RBP	5.36	□□□□□ -1.55
PTCD3-209	ENST00000472044	ZNF891	A8MT65	544 aa	Predicted RBP	5.36	□□□□□ -1.55
PTCD3-209	ENST00000472044		F8W031	263 aa	Predicted RBP	5.36	□□□□□ -1.55
PTCD3-209	ENST00000472044	ATP2A2	P16615	1042 aa	Known RBP	5.36	□□□□□ -1.55
PTCD3-209	ENST00000472044	CDK11B	P21127	795 aa	Known RBP	5.36	□□□□□ -1.55
PTCD3-209	ENST00000472044	LSS	P48449	732 aa		5.36	□□□□□ -1.55
PTCD3-209	ENST00000472044	OCRL	Q01968	901 aa		5.36	□□□□□ -1.55
PTCD3-209	ENST00000472044	STRN3	Q13033	797 aa		5.36	□□□□□ -1.55
PTCD3-209	ENST00000472044	SART3	Q15020	963 aa	Known RBP	5.36	□□□□□ -1.55
PTCD3-209	ENST00000472044	RAB3GAP1	Q15042	981 aa		5.36	□□□□□ -1.55
PTCD3-209	ENST00000472044	KCNMB1	Q16558	191 aa		5.36	□□□□□ -1.55
PTCD3-209	ENST00000472044	RNF219	Q5W0B1	726 aa	Predicted RBP	5.36	□□□□□ -1.55
PTCD3-209	ENST00000472044	CREB3L3	Q68CJ9	461 aa		5.36	□□□□□ -1.55
PTCD3-209	ENST00000472044	RPTN	Q6XPR3	784 aa		5.36	□□□□□ -1.55
PTCD3-209	ENST00000472044	NBPF11	Q86T75	865 aa		5.36	□□□□□ -1.55
PTCD3-209	ENST00000472044	PTRH1	Q86Y79	214 aa	Known RBP	5.36	□□□□□ -1.55
PTCD3-209	ENST00000472044	PRPF38A	Q8NAV1	312 aa	Known RBP	5.36	□□□□□ -1.55
PTCD3-209	ENST00000472044	TTLL11	Q8NHH1	800 aa		5.36	□□□□□ -1.55
PTCD3-209	ENST00000472044	DLG3	Q92796	817 aa		5.36	□□□□□ -1.55
PTCD3-209	ENST00000472044	USP7	Q93009	1102 aa		5.36	□□□□□ -1.55
PTCD3-209	ENST00000472044	SCYL1	Q96KG9	808 aa		5.36	□□□□□ -1.55
PTCD3-209	ENST00000472044	ZNF552	Q9H707	407 aa	Predicted RBP	5.36	□□□□□ -1.55
PTCD3-209	ENST00000472044	TYW1	Q9NV66	732 aa	Known RBP	5.36	□□□□□ -1.55
PTCD3-209	ENST00000472044	MYOT	Q9UBF9	498 aa		5.36	□□□□□ -1.55
PTCD3-209	ENST00000472044	PALD1	Q9ULE6	856 aa		5.36	□□□□□ -1.55
PTCD3-209	ENST00000472044	SIT1	Q9Y3P8	196 aa		5.36	□□□□□ -1.55
PTCD3-209	ENST00000472044	PCDHB4	Q9Y5E5	795 aa		5.36	□□□□□ -1.55
PTCD3-209	ENST00000472044	ALG1L2	C9J202	215 aa		5.35	□□□□□ -1.55
PTCD3-209	ENST00000472044	NEMP1	O14524	444 aa		5.35	□□□□□ -1.55
PTCD3-209	ENST00000472044	SLC27A2	O14975	620 aa		5.35	□□□□□ -1.55
PTCD3-209	ENST00000472044	PPM1G	O15355	546 aa	Predicted RBP	5.35	□□□□□ -1.55
PTCD3-209	ENST00000472044	GPR39	O43194	453 aa		5.35	□□□□□ -1.55
PTCD3-209	ENST00000472044	FKBP9	O95302	570 aa		5.35	□□□□□ -1.55
PTCD3-209	ENST00000472044	HMGB1	P09429	215 aa	Known RBP	5.35	□□□□□ -1.55
PTCD3-209	ENST00000472044	HSP90B1	P14625	803 aa	Known RBP	5.35	□□□□□ -1.55
PTCD3-209	ENST00000472044	KRT15	P19012	456 aa		5.35	□□□□□ -1.55
PTCD3-209	ENST00000472044	GJA4	P35212	333 aa		5.35	□□□□□ -1.55
PTCD3-209	ENST00000472044	ADCYAP1R1	P41586	468 aa		5.35	□□□□□ -1.55
PTCD3-209	ENST00000472044	IRF9	Q00978	393 aa		5.35	□□□□□ -1.55
PTCD3-209	ENST00000472044	SKOR2	Q2VWA4	1001 aa	Predicted RBP	5.35	□□□□□ -1.55
PTCD3-209	ENST00000472044	FKBP9P1	Q75LS8	142 aa		5.35	□□□□□ -1.55
PTCD3-209	ENST00000472044	MILR1	Q7Z6M3	343 aa		5.35	□□□□□ -1.55
PTCD3-209	ENST00000472044	PNPLA5	Q7Z6Z6	429 aa	Predicted RBP	5.35	□□□□□ -1.55
PTCD3-209	ENST00000472044		Q8N3U1	123 aa		5.35	□□□□□ -1.55
PTCD3-209	ENST00000472044	EFHB	Q8N7U6	833 aa		5.35	□□□□□ -1.55
PTCD3-209	ENST00000472044	WDR66	Q8TBY9	1149 aa		5.35	□□□□□ -1.55
PTCD3-209	ENST00000472044	CLEC4D	Q8WXI8	215 aa		5.35	□□□□□ -1.55
PTCD3-209	ENST00000472044	HSPBP1	Q9NZL4	362 aa		5.35	□□□□□ -1.55
PTCD3-209	ENST00000472044	APOBEC2	Q9Y235	224 aa	Known RBP	5.35	□□□□□ -1.55
PTCD3-209	ENST00000472044	TELO2	Q9Y4R8	837 aa		5.35	□□□□□ -1.55
PTCD3-209	ENST00000472044	B3GALT1	Q9Y5Z6	326 aa		5.35	□□□□□ -1.55
PTCD3-209	ENST00000472044	ATP23	Q9Y6H3	246 aa		5.35	□□□□□ -1.55
PTCD3-209	ENST00000472044	ZNF503-AS2	A6NEH8	195 aa		5.34	□□□□□ -1.55
PTCD3-209	ENST00000472044	NUDT19	A8MXV4	375 aa		5.34	□□□□□ -1.55
PTCD3-209	ENST00000472044	IQCJ-SCHIP1	C9J366	451 aa	Predicted RBP	5.34	□□□□□ -1.55
PTCD3-209	ENST00000472044	SDHB	P21912	280 aa		5.34	□□□□□ -1.55
PTCD3-209	ENST00000472044	PDE6B	P35913	854 aa		5.34	□□□□□ -1.55
PTCD3-209	ENST00000472044	CDKN1C	P49918	316 aa	Predicted RBP	5.34	□□□□□ -1.55
PTCD3-209	ENST00000472044	PRR5	P85299	388 aa		5.34	□□□□□ -1.55
PTCD3-209	ENST00000472044	TUSC3	Q13454	348 aa		5.34	□□□□□ -1.55
PTCD3-209	ENST00000472044	STAT4	Q14765	748 aa		5.34	□□□□□ -1.55
PTCD3-209	ENST00000472044	PLEKHN1	Q494U1	663 aa	Predicted RBP	5.34	□□□□□ -1.55
PTCD3-209	ENST00000472044	OLFML2B	Q68BL8	750 aa		5.34	□□□□□ -1.55
PTCD3-209	ENST00000472044	CC2D1A	Q6P1N0	951 aa	Predicted RBP	5.34	□□□□□ -1.55
PTCD3-209	ENST00000472044	ZC3H14	Q6PJT7	736 aa	Known RBP	5.34	□□□□□ -1.55
PTCD3-209	ENST00000472044	EP400NL	Q6ZTU2	488 aa		5.34	□□□□□ -1.55
PTCD3-209	ENST00000472044	NECAB2	Q7Z6G3	386 aa		5.34	□□□□□ -1.55

Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms