RNA–Protein interactions for RNA: ENST00000471701.1

PRPF40A-207, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 2

Gene PRPF40A, Length 293 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-207ENST00000471701 LAMTOR5O43504 91 aa5.55□□□□□ -1.52
PRPF40A-207ENST00000471701 DLX3O60479 287 aa5.55□□□□□ -1.52
PRPF40A-207ENST00000471701 CAPNS1P04632 268 aa5.55□□□□□ -1.52
PRPF40A-207ENST00000471701 MLLT6P55198 1093 aaPredicted RBP5.55□□□□□ -1.52
PRPF40A-207ENST00000471701 SPIRE1Q08AE8 756 aa5.55□□□□□ -1.52
PRPF40A-207ENST00000471701 TRMT10BQ6PF06 316 aaKnown RBP5.55□□□□□ -1.52
PRPF40A-207ENST00000471701 TMC5Q6UXY8 1006 aa5.55□□□□□ -1.52
PRPF40A-207ENST00000471701 SLC43A3Q8NBI5 491 aa5.55□□□□□ -1.52
PRPF40A-207ENST00000471701 DCAF4Q8WV16 495 aa5.55□□□□□ -1.52
PRPF40A-207ENST00000471701 C8orf49Q96NF6 230 aa5.55□□□□□ -1.52
PRPF40A-207ENST00000471701 AARSD1Q9BTE6 412 aaKnown RBP5.55□□□□□ -1.52
PRPF40A-207ENST00000471701 PHF20Q9BVI0 1012 aa5.55□□□□□ -1.52
PRPF40A-207ENST00000471701 BARX1Q9HBU1 254 aaPredicted RBP5.55□□□□□ -1.52
PRPF40A-207ENST00000471701 SLC27A2O14975 620 aa5.54□□□□□ -1.52
PRPF40A-207ENST00000471701 PRODHO43272 600 aa5.54□□□□□ -1.52
PRPF40A-207ENST00000471701 B4GALT4O60513 344 aa5.54□□□□□ -1.52
PRPF40A-207ENST00000471701 PPP2CBP62714 309 aa5.54□□□□□ -1.52
PRPF40A-207ENST00000471701 PPP2CAP67775 309 aa5.54□□□□□ -1.52
PRPF40A-207ENST00000471701 GRIN1Q05586 938 aa5.54□□□□□ -1.52
PRPF40A-207ENST00000471701 DDR2Q16832 855 aa5.54□□□□□ -1.52
PRPF40A-207ENST00000471701 ARHGEF18Q6ZSZ5 1173 aa5.54□□□□□ -1.52
PRPF40A-207ENST00000471701 DPH6Q7L8W6 267 aa5.54□□□□□ -1.52
PRPF40A-207ENST00000471701 LIMS2Q7Z4I7 341 aa5.54□□□□□ -1.52
PRPF40A-207ENST00000471701 CELF2-AS1Q8N7Q2 184 aa5.54□□□□□ -1.52
PRPF40A-207ENST00000471701 PIP4K2CQ8TBX8 421 aa5.54□□□□□ -1.52
PRPF40A-207ENST00000471701 YTHDC1Q96MU7 727 aaKnown RBP5.54□□□□□ -1.52
PRPF40A-207ENST00000471701 KCNJ15Q99712 375 aa5.54□□□□□ -1.52
PRPF40A-207ENST00000471701 TINF2Q9BSI4 451 aa5.54□□□□□ -1.52
PRPF40A-207ENST00000471701 HSPBP1Q9NZL4 362 aa5.54□□□□□ -1.52
PRPF40A-207ENST00000471701 B4GALT3O60512 393 aa5.53□□□□□ -1.52
PRPF40A-207ENST00000471701 MSCO60682 206 aa5.53□□□□□ -1.52
PRPF40A-207ENST00000471701 FBXO21O94952 628 aa5.53□□□□□ -1.52
PRPF40A-207ENST00000471701 GNAT1P11488 350 aa5.53□□□□□ -1.52
PRPF40A-207ENST00000471701 VASNQ6EMK4 673 aa5.53□□□□□ -1.52
PRPF40A-207ENST00000471701 NSMFQ6X4W1 530 aa5.53□□□□□ -1.52
PRPF40A-207ENST00000471701 OTOP3Q7RTS5 596 aa5.53□□□□□ -1.52
PRPF40A-207ENST00000471701 KBTBD2Q8IY47 623 aa5.53□□□□□ -1.52
PRPF40A-207ENST00000471701 IFNL3Q8IZI9 196 aa5.53□□□□□ -1.52
PRPF40A-207ENST00000471701 KLHL36Q8N4N3 616 aa5.53□□□□□ -1.52
PRPF40A-207ENST00000471701 CLEC4DQ8WXI8 215 aa5.53□□□□□ -1.52
PRPF40A-207ENST00000471701 CDIP1Q9H305 208 aa5.53□□□□□ -1.52
PRPF40A-207ENST00000471701 ENO2P09104 434 aaPredicted RBP5.52□□□□□ -1.53
PRPF40A-207ENST00000471701 FGFR1P11362 822 aa5.52□□□□□ -1.53
PRPF40A-207ENST00000471701 PABPC1P11940 636 aaKnown RBP5.52□□□□□ -1.53
PRPF40A-207ENST00000471701 COL6A2P12110 1019 aa5.52□□□□□ -1.53
PRPF40A-207ENST00000471701 ZNF20P17024 532 aa5.52□□□□□ -1.53
PRPF40A-207ENST00000471701 NFATC3Q12968 1075 aa5.52□□□□□ -1.53
PRPF40A-207ENST00000471701 KIZQ2M2Z5 673 aa5.52□□□□□ -1.53
PRPF40A-207ENST00000471701 LBX2Q6XYB7 198 aa5.52□□□□□ -1.53
PRPF40A-207ENST00000471701 LRRC47Q8N1G4 583 aaKnown RBP5.52□□□□□ -1.53
PRPF40A-207ENST00000471701 TTLL11Q8NHH1 800 aa5.52□□□□□ -1.53
PRPF40A-207ENST00000471701 DVL3Q92997 716 aaPredicted RBP5.52□□□□□ -1.53
PRPF40A-207ENST00000471701 GMLQ99445 158 aa5.52□□□□□ -1.53
PRPF40A-207ENST00000471701 ZFYVE21Q9BQ24 234 aa5.52□□□□□ -1.53
PRPF40A-207ENST00000471701 C1QTNF3Q9BXJ4 246 aa5.52□□□□□ -1.53
PRPF40A-207ENST00000471701 DLL4Q9NR61 685 aa5.52□□□□□ -1.53
PRPF40A-207ENST00000471701 ST6GALNAC2Q9UJ37 374 aa5.52□□□□□ -1.53
PRPF40A-207ENST00000471701 TRAV20A0A0B4J274 112 aa5.51□□□□□ -1.53
PRPF40A-207ENST00000471701 FAM47E-STBD1D6RA91 191 aa5.51□□□□□ -1.53
PRPF40A-207ENST00000471701 KLF4O43474 513 aa5.51□□□□□ -1.53
PRPF40A-207ENST00000471701 CKMP06732 381 aa5.51□□□□□ -1.53
PRPF40A-207ENST00000471701 GRK2P25098 689 aa5.51□□□□□ -1.53
PRPF40A-207ENST00000471701 GRK3P35626 688 aa5.51□□□□□ -1.53
PRPF40A-207ENST00000471701 IFRD2Q12894 506 aaPredicted RBP5.51□□□□□ -1.53
PRPF40A-207ENST00000471701 TUSC3Q13454 348 aa5.51□□□□□ -1.53
PRPF40A-207ENST00000471701 PAN2Q504Q3 1202 aaKnown RBP5.51□□□□□ -1.53
PRPF40A-207ENST00000471701 KCNT2Q6UVM3 1135 aa5.51□□□□□ -1.53
PRPF40A-207ENST00000471701 RBM12BQ8IXT5 1001 aaKnown RBP5.51□□□□□ -1.53
PRPF40A-207ENST00000471701 ST13P5Q8NFI4 369 aaPredicted RBP5.51□□□□□ -1.53
PRPF40A-207ENST00000471701 KISS1RQ969F8 398 aaPredicted RBP5.51□□□□□ -1.53
PRPF40A-207ENST00000471701 TRIM55Q9BYV6 548 aa5.51□□□□□ -1.53
PRPF40A-207ENST00000471701 DEF6Q9H4E7 631 aa5.51□□□□□ -1.53
PRPF40A-207ENST00000471701 PPP4R1LQ9P1A2 415 aa5.51□□□□□ -1.53
PRPF40A-207ENST00000471701 PPARGC1AQ9UBK2 798 aaKnown RBP5.51□□□□□ -1.53
PRPF40A-207ENST00000471701 PPP1R1BQ9UD71 204 aaPredicted RBP5.51□□□□□ -1.53
PRPF40A-207ENST00000471701 C1QTNF3-AMACRE9PGA6 284 aa5.5□□□□□ -1.53
PRPF40A-207ENST00000471701 U2SURPO15042 1029 aaKnown RBP5.5□□□□□ -1.53
PRPF40A-207ENST00000471701 FAHP16930 419 aa5.5□□□□□ -1.53
PRPF40A-207ENST00000471701 GPR85P60893 370 aa5.5□□□□□ -1.53
PRPF40A-207ENST00000471701 CIR1Q86X95 450 aaPredicted RBP5.5□□□□□ -1.53
PRPF40A-207ENST00000471701 IGDCC4Q8TDY8 1250 aa5.5□□□□□ -1.53
PRPF40A-207ENST00000471701 ZCCHC14Q8WYQ9 949 aaKnown RBP5.5□□□□□ -1.53
PRPF40A-207ENST00000471701 IPO9Q96P70 1041 aaKnown RBP5.5□□□□□ -1.53
PRPF40A-207ENST00000471701 CDK5RAP1Q96SZ6 601 aaKnown RBP5.5□□□□□ -1.53
PRPF40A-207ENST00000471701 ALG1Q9BT22 464 aa5.5□□□□□ -1.53
PRPF40A-207ENST00000471701 SSBP3Q9BWW4 388 aaPredicted RBP5.5□□□□□ -1.53
PRPF40A-207ENST00000471701 RBPJLQ9UBG7 517 aa5.5□□□□□ -1.53
PRPF40A-207ENST00000471701 DSEQ9UL01 958 aa5.5□□□□□ -1.53
PRPF40A-207ENST00000471701 WASF3Q9UPY6 502 aa5.5□□□□□ -1.53
PRPF40A-207ENST00000471701 SOD2P04179 222 aa5.49□□□□□ -1.53
PRPF40A-207ENST00000471701 CHGBP05060 677 aa5.49□□□□□ -1.53
PRPF40A-207ENST00000471701 GLRBP48167 497 aa5.49□□□□□ -1.53
PRPF40A-207ENST00000471701 ZXDAP98168 799 aa5.49□□□□□ -1.53
PRPF40A-207ENST00000471701 RAB33AQ14088 237 aa5.49□□□□□ -1.53
PRPF40A-207ENST00000471701 SMAD2Q15796 467 aaKnown RBP5.49□□□□□ -1.53
PRPF40A-207ENST00000471701 SLFN13Q68D06 897 aa5.49□□□□□ -1.53
PRPF40A-207ENST00000471701 PKN3Q6P5Z2 889 aa5.49□□□□□ -1.53
PRPF40A-207ENST00000471701 EP400NLQ6ZTU2 488 aa5.49□□□□□ -1.53
PRPF40A-207ENST00000471701 PNPLA5Q7Z6Z6 429 aaPredicted RBP5.49□□□□□ -1.53
PRPF40A-207ENST00000471701 DTX3Q8N9I9 347 aa5.49□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms