RNA–Protein interactions for RNA: ENST00000469852.5

COL9A3-209, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 901 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-209ENST00000469852 EIF4ENIF1Q9NRA8 985 aaKnown RBP16.76■□□□□ 0.27
COL9A3-209ENST00000469852 DDX39AO00148 427 aaKnown RBP16.75■□□□□ 0.27
COL9A3-209ENST00000469852 IPO5O00410 1097 aaKnown RBP16.75■□□□□ 0.27
COL9A3-209ENST00000469852 MAFGO15525 162 aa16.75■□□□□ 0.27
COL9A3-209ENST00000469852 DYNC1LI2O43237 492 aaPredicted RBP16.75■□□□□ 0.27
COL9A3-209ENST00000469852 NEMFO60524 1076 aa16.75■□□□□ 0.27
COL9A3-209ENST00000469852 ADAMTS4O75173 837 aa16.75■□□□□ 0.27
COL9A3-209ENST00000469852 FARP2O94887 1054 aaPredicted RBP16.75■□□□□ 0.27
COL9A3-209ENST00000469852 RARBP10826 455 aa16.75■□□□□ 0.27
COL9A3-209ENST00000469852 OR6J1Q8NGC5 347 aa16.75■□□□□ 0.27
COL9A3-209ENST00000469852 SLC5A5Q92911 643 aa16.75■□□□□ 0.27
COL9A3-209ENST00000469852 CDHR1Q96JP9 859 aa16.75■□□□□ 0.27
COL9A3-209ENST00000469852 NAP1L4Q99733 375 aaKnown RBP16.75■□□□□ 0.27
COL9A3-209ENST00000469852 SENP7Q9BQF6 1050 aa16.75■□□□□ 0.27
COL9A3-209ENST00000469852 UPF3AQ9H1J1 476 aaKnown RBP16.75■□□□□ 0.27
COL9A3-209ENST00000469852 XPNPEP3Q9NQH7 507 aa16.75■□□□□ 0.27
COL9A3-209ENST00000469852 CLIC4Q9Y696 253 aa16.75■□□□□ 0.27
COL9A3-209ENST00000469852 MKI67P46013 3256 aaKnown RBP16.74■□□□□ 0.27
COL9A3-209ENST00000469852 NKRFO15226 690 aaKnown RBP eCLIP16.74■□□□□ 0.27
COL9A3-209ENST00000469852 GH1P01241 217 aa16.74■□□□□ 0.27
COL9A3-209ENST00000469852 GJB1P08034 283 aa16.74■□□□□ 0.27
COL9A3-209ENST00000469852 PDIA4P13667 645 aaKnown RBP16.74■□□□□ 0.27
COL9A3-209ENST00000469852 GJA9P57773 515 aa16.74■□□□□ 0.27
COL9A3-209ENST00000469852 BEX3Q00994 111 aa16.74■□□□□ 0.27
COL9A3-209ENST00000469852 SP4Q02446 784 aa16.74■□□□□ 0.27
COL9A3-209ENST00000469852 HSDL1Q3SXM5 330 aa16.74■□□□□ 0.27
COL9A3-209ENST00000469852 DHX37Q8IY37 1157 aaKnown RBP16.74■□□□□ 0.27
COL9A3-209ENST00000469852 U2AF1L4Q8WU68 220 aaKnown RBP16.74■□□□□ 0.27
COL9A3-209ENST00000469852 MTMR9Q96QG7 549 aa16.74■□□□□ 0.27
COL9A3-209ENST00000469852 USP28Q96RU2 1077 aa16.74■□□□□ 0.27
COL9A3-209ENST00000469852 KIAA0100Q14667 2235 aaKnown RBP16.74■□□□□ 0.27
COL9A3-209ENST00000469852 NFASCO94856 1347 aa16.73■□□□□ 0.27
COL9A3-209ENST00000469852 MSCO60682 206 aa16.73■□□□□ 0.27
COL9A3-209ENST00000469852 PSMD10O75832 226 aa16.73■□□□□ 0.27
COL9A3-209ENST00000469852 CCNE2O96020 404 aa16.73■□□□□ 0.27
COL9A3-209ENST00000469852 CEBPZQ03701 1054 aaKnown RBP16.73■□□□□ 0.27
COL9A3-209ENST00000469852 PTGDRQ13258 359 aa16.73■□□□□ 0.27
COL9A3-209ENST00000469852 NEDD9Q14511 834 aa16.73■□□□□ 0.27
COL9A3-209ENST00000469852 SF3A1Q15459 793 aaKnown RBP16.73■□□□□ 0.27
COL9A3-209ENST00000469852 CALCRLQ16602 461 aa16.73■□□□□ 0.27
COL9A3-209ENST00000469852 METTL7BQ6UX53 244 aa16.73■□□□□ 0.27
COL9A3-209ENST00000469852 AFG1LQ8WV93 481 aa16.73■□□□□ 0.27
COL9A3-209ENST00000469852 EMID1Q96A84 441 aaPredicted RBP16.73■□□□□ 0.27
COL9A3-209ENST00000469852 CRISPLD2Q9H0B8 497 aa16.73■□□□□ 0.27
COL9A3-209ENST00000469852 MLXIPQ9HAP2 919 aa16.73■□□□□ 0.27
COL9A3-209ENST00000469852 Q9Y3F1 56 aa16.73■□□□□ 0.27
COL9A3-209ENST00000469852 SGPL1O95470 568 aa16.72■□□□□ 0.27
COL9A3-209ENST00000469852 MYCNP04198 464 aaPredicted RBP16.72■□□□□ 0.27
COL9A3-209ENST00000469852 C6orf222P0C671 652 aaPredicted RBP16.72■□□□□ 0.27
COL9A3-209ENST00000469852 DNM1Q05193 864 aaKnown RBP16.72■□□□□ 0.27
COL9A3-209ENST00000469852 ORC2Q13416 577 aaPredicted RBP16.72■□□□□ 0.27
COL9A3-209ENST00000469852 LRRC41Q15345 812 aa16.72■□□□□ 0.27
COL9A3-209ENST00000469852 LRCH2Q5VUJ6 765 aa16.72■□□□□ 0.27
COL9A3-209ENST00000469852 KLHDC9Q8NEP7 349 aa16.72■□□□□ 0.27
COL9A3-209ENST00000469852 SPATA33Q96N06 139 aa16.72■□□□□ 0.27
COL9A3-209ENST00000469852 AP5M1Q9H0R1 490 aa16.72■□□□□ 0.27
COL9A3-209ENST00000469852 UNC45AQ9H3U1 944 aa16.72■□□□□ 0.27
COL9A3-209ENST00000469852 JPH1Q9HDC5 661 aaPredicted RBP16.72■□□□□ 0.27
COL9A3-209ENST00000469852 TFIP11Q9UBB9 837 aaKnown RBP16.72■□□□□ 0.27
COL9A3-209ENST00000469852 SLC9A2Q9UBY0 812 aa16.72■□□□□ 0.27
COL9A3-209ENST00000469852 VAV3Q9UKW4 847 aa16.72■□□□□ 0.27
COL9A3-209ENST00000469852 OGDHLQ9ULD0 1010 aa16.72■□□□□ 0.27
COL9A3-209ENST00000469852 WDR81Q562E7 1941 aa16.71■□□□□ 0.27
COL9A3-209ENST00000469852 GSTTP1A0A1W2PQM5 241 aa16.71■□□□□ 0.27
COL9A3-209ENST00000469852 A6NJR5 290 aa16.71■□□□□ 0.27
COL9A3-209ENST00000469852 TBX3O15119 743 aa16.71■□□□□ 0.27
COL9A3-209ENST00000469852 MMP3P08254 477 aa16.71■□□□□ 0.27
COL9A3-209ENST00000469852 OR52Z1P0C646 297 aa16.71■□□□□ 0.27
COL9A3-209ENST00000469852 TXKP42681 527 aa16.71■□□□□ 0.27
COL9A3-209ENST00000469852 GJA8P48165 433 aa16.71■□□□□ 0.27
COL9A3-209ENST00000469852 MNX1P50219 401 aaPredicted RBP16.71■□□□□ 0.27
COL9A3-209ENST00000469852 NKX3-2P78367 333 aa16.71■□□□□ 0.27
COL9A3-209ENST00000469852 NUCB2P80303 420 aa16.71■□□□□ 0.27
COL9A3-209ENST00000469852 ATP2C1P98194 919 aaPredicted RBP16.71■□□□□ 0.27
COL9A3-209ENST00000469852 SPIRE1Q08AE8 756 aa16.71■□□□□ 0.27
COL9A3-209ENST00000469852 LAMC2Q13753 1193 aa16.71■□□□□ 0.27
COL9A3-209ENST00000469852 PTPAQ15257 358 aa16.71■□□□□ 0.27
COL9A3-209ENST00000469852 IL17AQ16552 155 aa16.71■□□□□ 0.27
COL9A3-209ENST00000469852 FSCN1Q16658 493 aaKnown RBP16.71■□□□□ 0.27
COL9A3-209ENST00000469852 CCSAPQ6IQ19 270 aaPredicted RBP16.71■□□□□ 0.27
COL9A3-209ENST00000469852 B3GNT9Q6UX72 402 aa16.71■□□□□ 0.27
COL9A3-209ENST00000469852 PPTC7Q8NI37 304 aa16.71■□□□□ 0.27
COL9A3-209ENST00000469852 FAM20AQ96MK3 541 aa16.71■□□□□ 0.27
COL9A3-209ENST00000469852 RIT2Q99578 217 aa16.71■□□□□ 0.27
COL9A3-209ENST00000469852 GPR20Q99678 358 aa16.71■□□□□ 0.27
COL9A3-209ENST00000469852 SDF4Q9BRK5 362 aa16.71■□□□□ 0.27
COL9A3-209ENST00000469852 TEKT3Q9BXF9 490 aa16.71■□□□□ 0.27
COL9A3-209ENST00000469852 TBC1D22BQ9NU19 505 aa16.71■□□□□ 0.27
COL9A3-209ENST00000469852 CIZ1Q9ULV3 898 aaPredicted RBP16.71■□□□□ 0.27
COL9A3-209ENST00000469852 TCHHQ07283 1943 aa16.7■□□□□ 0.26
COL9A3-209ENST00000469852 CHMP2AO43633 222 aa16.7■□□□□ 0.26
COL9A3-209ENST00000469852 GAS7O60861 476 aa16.7■□□□□ 0.26
COL9A3-209ENST00000469852 ACTR2P61160 394 aa16.7■□□□□ 0.26
COL9A3-209ENST00000469852 GIMAP8Q8ND71 665 aaPredicted RBP16.7■□□□□ 0.26
COL9A3-209ENST00000469852 TMEM106CQ9BVX2 250 aa16.7■□□□□ 0.26
COL9A3-209ENST00000469852 EML1O00423 815 aa16.69■□□□□ 0.26
COL9A3-209ENST00000469852 MARCH6O60337 910 aa16.69■□□□□ 0.26
COL9A3-209ENST00000469852 TFRCP02786 760 aaKnown RBP16.69■□□□□ 0.26
COL9A3-209ENST00000469852 HOXD8P13378 290 aaPredicted RBP16.69■□□□□ 0.26
COL9A3-209ENST00000469852 EN2P19622 333 aaPredicted RBP16.69■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms