RNA–Protein interactions for RNA: ENST00000466781.5

HPS4-209, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 1 (best)

Gene HPS4, Length 6,136 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-209ENST00000466781 AMNQ9BXJ7 453 aa9.45□□□□□ -0.9
HPS4-209ENST00000466781 DPH5Q9H2P9 285 aa9.45□□□□□ -0.9
HPS4-209ENST00000466781 GPR108Q9NPR9 543 aa9.45□□□□□ -0.9
HPS4-209ENST00000466781 SOS2Q07890 1332 aaPredicted RBP9.45□□□□□ -0.9
HPS4-209ENST00000466781 USP17L8P0C7I0 530 aa9.45□□□□□ -0.9
HPS4-209ENST00000466781 SOX5P35711 763 aa9.45□□□□□ -0.9
HPS4-209ENST00000466781 KPNA2P52292 529 aaKnown RBP9.45□□□□□ -0.9
HPS4-209ENST00000466781 WHAMMP3Q1A5X7 153 aa9.45□□□□□ -0.9
HPS4-209ENST00000466781 CCNYQ8ND76 341 aa9.45□□□□□ -0.9
HPS4-209ENST00000466781 RNF139Q8WU17 664 aa9.45□□□□□ -0.9
HPS4-209ENST00000466781 PGBD1Q96JS3 809 aa9.45□□□□□ -0.9
HPS4-209ENST00000466781 GBP5Q96PP8 586 aa9.45□□□□□ -0.9
HPS4-209ENST00000466781 SLC13A4Q9UKG4 626 aa9.45□□□□□ -0.9
HPS4-209ENST00000466781 CPP00450 1065 aa9.45□□□□□ -0.9
HPS4-209ENST00000466781 GAP43P17677 238 aa9.45□□□□□ -0.9
HPS4-209ENST00000466781 ARL4AP40617 200 aa9.45□□□□□ -0.9
HPS4-209ENST00000466781 UBXN2AP68543 259 aa9.45□□□□□ -0.9
HPS4-209ENST00000466781 PTPROQ16827 1216 aa9.45□□□□□ -0.9
HPS4-209ENST00000466781 SSH3Q8TE77 659 aa9.45□□□□□ -0.9
HPS4-209ENST00000466781 EAF2Q96CJ1 260 aaPredicted RBP9.45□□□□□ -0.9
HPS4-209ENST00000466781 FAM81BQ96LP2 452 aa9.45□□□□□ -0.9
HPS4-209ENST00000466781 SLC39A2Q9NP94 309 aa9.45□□□□□ -0.9
HPS4-209ENST00000466781 CPS1P31327 1500 aa9.45□□□□□ -0.9
HPS4-209ENST00000466781 IQCA1LA6NCM1 817 aa9.45□□□□□ -0.9
HPS4-209ENST00000466781 OPHN1O60890 802 aa9.45□□□□□ -0.9
HPS4-209ENST00000466781 PCP11498 1178 aaKnown RBP9.45□□□□□ -0.9
HPS4-209ENST00000466781 SERPINB6P35237 376 aa9.45□□□□□ -0.9
HPS4-209ENST00000466781 CYP4A11Q02928 519 aa9.45□□□□□ -0.9
HPS4-209ENST00000466781 HP1BP3Q5SSJ5 553 aaPredicted RBP9.45□□□□□ -0.9
HPS4-209ENST00000466781 ADAT2Q7Z6V5 191 aaKnown RBP9.45□□□□□ -0.9
HPS4-209ENST00000466781 SPICE1Q8N0Z3 855 aa9.45□□□□□ -0.9
HPS4-209ENST00000466781 SIX6OS1Q8N1H7 587 aa9.45□□□□□ -0.9
HPS4-209ENST00000466781 LRRC8CQ8TDW0 803 aa9.45□□□□□ -0.9
HPS4-209ENST00000466781 CCDC17Q96LX7 622 aa9.45□□□□□ -0.9
HPS4-209ENST00000466781 MMTAG2Q9BU76 263 aaKnown RBP9.45□□□□□ -0.9
HPS4-209ENST00000466781 SART1O43290 800 aaKnown RBP9.44□□□□□ -0.9
HPS4-209ENST00000466781 GTPBP6O43824 516 aaPredicted RBP9.44□□□□□ -0.9
HPS4-209ENST00000466781 GSPT1P15170 499 aaKnown RBP9.44□□□□□ -0.9
HPS4-209ENST00000466781 ADKP55263 362 aaKnown RBP9.44□□□□□ -0.9
HPS4-209ENST00000466781 FBXW4P57775 412 aa9.44□□□□□ -0.9
HPS4-209ENST00000466781 PPP1R2P3Q6NXS1 205 aa9.44□□□□□ -0.9
HPS4-209ENST00000466781 APOBEC3FQ8IUX4 373 aaKnown RBP9.44□□□□□ -0.9
HPS4-209ENST00000466781 DHX36Q9H2U1 1008 aaKnown RBP9.44□□□□□ -0.9
HPS4-209ENST00000466781 LRRC4Q9HBW1 653 aa9.44□□□□□ -0.9
HPS4-209ENST00000466781 USP31Q70CQ4 1352 aa9.44□□□□□ -0.9
HPS4-209ENST00000466781 TTLL1O95922 423 aa9.44□□□□□ -0.9
HPS4-209ENST00000466781 PFKFB1P16118 471 aa9.44□□□□□ -0.9
HPS4-209ENST00000466781 LONP1P36776 959 aaKnown RBP9.44□□□□□ -0.9
HPS4-209ENST00000466781 ELF2Q15723 593 aa9.44□□□□□ -0.9
HPS4-209ENST00000466781 EXOC3L4Q17RC7 722 aa9.44□□□□□ -0.9
HPS4-209ENST00000466781 TBC1D10BQ4KMP7 808 aaPredicted RBP9.44□□□□□ -0.9
HPS4-209ENST00000466781 FANCBQ8NB91 859 aa9.44□□□□□ -0.9
HPS4-209ENST00000466781 OR8K1Q8NGG5 319 aa9.44□□□□□ -0.9
HPS4-209ENST00000466781 ZNF274Q96GC6 653 aaPredicted RBP9.44□□□□□ -0.9
HPS4-209ENST00000466781 CDHR1Q96JP9 859 aa9.44□□□□□ -0.9
HPS4-209ENST00000466781 FTOQ9C0B1 505 aaKnown RBP eCLIP9.44□□□□□ -0.9
HPS4-209ENST00000466781 PNMA3Q9UL41 463 aa9.44□□□□□ -0.9
HPS4-209ENST00000466781 MAGED2Q9UNF1 606 aaPredicted RBP9.44□□□□□ -0.9
HPS4-209ENST00000466781 NCOA3Q9Y6Q9 1424 aa9.44□□□□□ -0.9
HPS4-209ENST00000466781 EVI5O60447 810 aa9.44□□□□□ -0.9
HPS4-209ENST00000466781 GDF11O95390 407 aa9.44□□□□□ -0.9
HPS4-209ENST00000466781 HSPA8P11142 646 aaKnown RBP9.44□□□□□ -0.9
HPS4-209ENST00000466781 RNF219Q5W0B1 726 aaPredicted RBP9.44□□□□□ -0.9
HPS4-209ENST00000466781 TSPYL2Q9H2G4 693 aaPredicted RBP9.44□□□□□ -0.9
HPS4-209ENST00000466781 MAGEF1Q9HAY2 307 aa9.44□□□□□ -0.9
HPS4-209ENST00000466781 RIPOR2Q9Y4F9 1068 aa9.44□□□□□ -0.9
HPS4-209ENST00000466781 SPECC1L-ADORA2AF8WAN1 911 aa9.44□□□□□ -0.9
HPS4-209ENST00000466781 MCF2LO15068 1137 aa9.44□□□□□ -0.9
HPS4-209ENST00000466781 CIITAP33076 1130 aa9.44□□□□□ -0.9
HPS4-209ENST00000466781 PSMC2P35998 433 aaKnown RBP9.44□□□□□ -0.9
HPS4-209ENST00000466781 PPARGP37231 505 aaPredicted RBP9.44□□□□□ -0.9
HPS4-209ENST00000466781 FAM26FQ5R3K3 315 aa9.44□□□□□ -0.9
HPS4-209ENST00000466781 ARHGEF18Q6ZSZ5 1173 aa9.44□□□□□ -0.9
HPS4-209ENST00000466781 SMIM5Q71RC9 77 aa9.44□□□□□ -0.9
HPS4-209ENST00000466781 MOSPD1Q9UJG1 213 aa9.44□□□□□ -0.9
HPS4-209ENST00000466781 NRKQ7Z2Y5 1582 aa9.44□□□□□ -0.9
HPS4-209ENST00000466781 HNRNPCL2B2RXH8 293 aa9.44□□□□□ -0.9
HPS4-209ENST00000466781 HNRNPCL1O60812 293 aaKnown RBP9.44□□□□□ -0.9
HPS4-209ENST00000466781 ANKRD20A4Q4UJ75 823 aa9.44□□□□□ -0.9
HPS4-209ENST00000466781 ANKRD20A8PQ5CZ79 823 aa9.44□□□□□ -0.9
HPS4-209ENST00000466781 ANKRD20A2Q5SQ80 823 aa9.44□□□□□ -0.9
HPS4-209ENST00000466781 ANKRD20A1Q5TYW2 823 aa9.44□□□□□ -0.9
HPS4-209ENST00000466781 PPP4R4Q6NUP7 873 aa9.44□□□□□ -0.9
HPS4-209ENST00000466781 DSTYKQ6XUX3 929 aa9.44□□□□□ -0.9
HPS4-209ENST00000466781 DNAAF3Q8N9W5 541 aa9.44□□□□□ -0.9
HPS4-209ENST00000466781 GJA10Q969M2 543 aa9.44□□□□□ -0.9
HPS4-209ENST00000466781 STK17AQ9UEE5 414 aa9.44□□□□□ -0.9
HPS4-209ENST00000466781 KIAA1024Q9UPX6 916 aa9.44□□□□□ -0.9
HPS4-209ENST00000466781 KDM4FA0A1W2PPD8 638 aa9.43□□□□□ -0.9
HPS4-209ENST00000466781 FMNL1O95466 1100 aaPredicted RBP9.43□□□□□ -0.9
HPS4-209ENST00000466781 ZNF18P17022 549 aa9.43□□□□□ -0.9
HPS4-209ENST00000466781 GPATCH4Q5T3I0 446 aaKnown RBP9.43□□□□□ -0.9
HPS4-209ENST00000466781 KCTD1Q719H9 257 aa9.43□□□□□ -0.9
HPS4-209ENST00000466781 SUCLA2Q9P2R7 463 aaPredicted RBP9.43□□□□□ -0.9
HPS4-209ENST00000466781 PTPN22Q9Y2R2 807 aa9.43□□□□□ -0.9
HPS4-209ENST00000466781 EZH2Q15910 746 aaKnown RBP9.43□□□□□ -0.9
HPS4-209ENST00000466781 MIGA2Q7L4E1 593 aa9.43□□□□□ -0.9
HPS4-209ENST00000466781 FASTKD5Q7L8L6 764 aaKnown RBP9.43□□□□□ -0.9
HPS4-209ENST00000466781 CFAP61Q8NHU2 1237 aa9.43□□□□□ -0.9
HPS4-209ENST00000466781 N4BP2L2Q92802 583 aaPredicted RBP9.43□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms