RNA–Protein interactions for RNA: ENST00000466591.1

COL7A1-206, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 778 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-206ENST00000466591 PIK3CDO00329 1044 aa20.12■□□□□ 0.81
COL7A1-206ENST00000466591 ICAM3P32942 547 aa20.12■□□□□ 0.81
COL7A1-206ENST00000466591 MRPS9P82933 396 aaKnown RBP20.12■□□□□ 0.81
COL7A1-206ENST00000466591 ZNF200P98182 395 aaPredicted RBP20.12■□□□□ 0.81
COL7A1-206ENST00000466591 KRT32Q14532 448 aa20.12■□□□□ 0.81
COL7A1-206ENST00000466591 ZNF618Q5T7W0 954 aa20.12■□□□□ 0.81
COL7A1-206ENST00000466591 DHX38Q92620 1227 aaKnown RBP20.12■□□□□ 0.81
COL7A1-206ENST00000466591 FRMPD4Q14CM0 1322 aa20.11■□□□□ 0.81
COL7A1-206ENST00000466591 ABHD14A-ACY1A0A1B0GW23 586 aa20.11■□□□□ 0.81
COL7A1-206ENST00000466591 RSPH10B2B2RC85 870 aa20.11■□□□□ 0.81
COL7A1-206ENST00000466591 RSPH10BP0C881 870 aa20.11■□□□□ 0.81
COL7A1-206ENST00000466591 SMIM10L2AP0DMW4 78 aa20.11■□□□□ 0.81
COL7A1-206ENST00000466591 SMIM10L2BP0DMW5 78 aa20.11■□□□□ 0.81
COL7A1-206ENST00000466591 HOXD8P13378 290 aaPredicted RBP20.11■□□□□ 0.81
COL7A1-206ENST00000466591 NAPAP54920 295 aa20.11■□□□□ 0.81
COL7A1-206ENST00000466591 WDR5P61964 334 aaKnown RBP20.11■□□□□ 0.81
COL7A1-206ENST00000466591 RTN1Q16799 776 aa20.11■□□□□ 0.81
COL7A1-206ENST00000466591 TJAP1Q5JTD0 557 aa20.11■□□□□ 0.81
COL7A1-206ENST00000466591 TMTC3Q6ZXV5 915 aa20.11■□□□□ 0.81
COL7A1-206ENST00000466591 C16orf70Q9BSU1 422 aa20.11■□□□□ 0.81
COL7A1-206ENST00000466591 PKD2L1Q9P0L9 805 aa20.11■□□□□ 0.81
COL7A1-206ENST00000466591 MEIS2O14770 477 aa20.1■□□□□ 0.81
COL7A1-206ENST00000466591 ZBTB43O43298 467 aa20.1■□□□□ 0.81
COL7A1-206ENST00000466591 ADGRE1Q14246 886 aa20.1■□□□□ 0.81
COL7A1-206ENST00000466591 UBE2SQ16763 222 aa20.1■□□□□ 0.81
COL7A1-206ENST00000466591 VWCEQ96DN2 955 aa20.1■□□□□ 0.81
COL7A1-206ENST00000466591 CCDC136Q96JN2 1154 aa20.1■□□□□ 0.81
COL7A1-206ENST00000466591 GPR20Q99678 358 aa20.1■□□□□ 0.81
COL7A1-206ENST00000466591 NBNO60934 754 aa20.09■□□□□ 0.81
COL7A1-206ENST00000466591 LGR5O75473 907 aa20.09■□□□□ 0.81
COL7A1-206ENST00000466591 CTSHP09668 335 aa20.09■□□□□ 0.81
COL7A1-206ENST00000466591 ARHGAP4P98171 946 aa20.09■□□□□ 0.81
COL7A1-206ENST00000466591 RBL2Q08999 1139 aa20.09■□□□□ 0.81
COL7A1-206ENST00000466591 MTMR1Q13613 665 aa20.09■□□□□ 0.81
COL7A1-206ENST00000466591 FAM117BQ6P1L5 589 aa20.09■□□□□ 0.81
COL7A1-206ENST00000466591 DHX32Q7L7V1 743 aaKnown RBP20.09■□□□□ 0.81
COL7A1-206ENST00000466591 SKAP1Q86WV1 359 aa20.09■□□□□ 0.81
COL7A1-206ENST00000466591 GLG1Q92896 1179 aa20.09■□□□□ 0.81
COL7A1-206ENST00000466591 GPRASP2Q96D09 838 aa20.09■□□□□ 0.81
COL7A1-206ENST00000466591 CTAGE1Q96RT6 745 aa20.09■□□□□ 0.81
COL7A1-206ENST00000466591 SENP7Q9BQF6 1050 aa20.09■□□□□ 0.81
COL7A1-206ENST00000466591 TRIP12Q14669 1992 aaPredicted RBP20.08■□□□□ 0.81
COL7A1-206ENST00000466591 GOLGA8AA7E2F4 631 aa20.08■□□□□ 0.81
COL7A1-206ENST00000466591 GOLGA8BA8MQT2 603 aa20.08■□□□□ 0.81
COL7A1-206ENST00000466591 AMHP03971 560 aa20.08■□□□□ 0.81
COL7A1-206ENST00000466591 HMGB1P09429 215 aaKnown RBP20.08■□□□□ 0.81
COL7A1-206ENST00000466591 APOA5Q6Q788 366 aa20.08■□□□□ 0.81
COL7A1-206ENST00000466591 SERINC5Q86VE9 423 aa20.08■□□□□ 0.81
COL7A1-206ENST00000466591 SGMS1Q86VZ5 419 aa20.08■□□□□ 0.81
COL7A1-206ENST00000466591 TRIM50Q86XT4 487 aa20.08■□□□□ 0.81
COL7A1-206ENST00000466591 ATXN2LQ8WWM7 1075 aaKnown RBP20.08■□□□□ 0.81
COL7A1-206ENST00000466591 TCEANC2Q96MN5 208 aa20.08■□□□□ 0.81
COL7A1-206ENST00000466591 PRDM6Q9NQX0 595 aa20.08■□□□□ 0.81
COL7A1-206ENST00000466591 SETD4Q9NVD3 440 aa20.08■□□□□ 0.81
COL7A1-206ENST00000466591 PCDHA6Q9UN73 950 aa20.08■□□□□ 0.81
COL7A1-206ENST00000466591 PCDHA8Q9Y5H6 950 aa20.08■□□□□ 0.81
COL7A1-206ENST00000466591 CDH23Q9H251 3354 aa20.07■□□□□ 0.8
COL7A1-206ENST00000466591 KLF18A0A0U1RQI7 1052 aa20.07■□□□□ 0.8
COL7A1-206ENST00000466591 TREHO43280 583 aa20.07■□□□□ 0.8
COL7A1-206ENST00000466591 CXCL10P02778 98 aa20.07■□□□□ 0.8
COL7A1-206ENST00000466591 TCF7P36402 384 aaPredicted RBP20.07■□□□□ 0.8
COL7A1-206ENST00000466591 DEFB103AP81534 67 aa20.07■□□□□ 0.8
COL7A1-206ENST00000466591 TAP1Q03518 808 aa20.07■□□□□ 0.8
COL7A1-206ENST00000466591 TMCO2Q7Z6W1 182 aaPredicted RBP20.07■□□□□ 0.8
COL7A1-206ENST00000466591 MYOCDQ8IZQ8 938 aa20.07■□□□□ 0.8
COL7A1-206ENST00000466591 SEPT8Q92599 483 aa20.07■□□□□ 0.8
COL7A1-206ENST00000466591 RNPEPQ9H4A4 650 aa20.07■□□□□ 0.8
COL7A1-206ENST00000466591 BCAS3Q9H6U6 928 aa20.07■□□□□ 0.8
COL7A1-206ENST00000466591 MTUS1Q9ULD2 1270 aa20.07■□□□□ 0.8
COL7A1-206ENST00000466591 RFXAPO00287 272 aa20.06■□□□□ 0.8
COL7A1-206ENST00000466591 ZNF76P36508 570 aa20.06■□□□□ 0.8
COL7A1-206ENST00000466591 ADCY7P51828 1080 aa20.06■□□□□ 0.8
COL7A1-206ENST00000466591 MRPS5P82675 430 aaKnown RBP20.06■□□□□ 0.8
COL7A1-206ENST00000466591 RSPH3Q86UC2 560 aa20.06■□□□□ 0.8
COL7A1-206ENST00000466591 WNT8BQ93098 351 aa20.06■□□□□ 0.8
COL7A1-206ENST00000466591 RAD9AQ99638 391 aa20.06■□□□□ 0.8
COL7A1-206ENST00000466591 SDF4Q9BRK5 362 aa20.06■□□□□ 0.8
COL7A1-206ENST00000466591 CAND2O75155 1236 aa20.05■□□□□ 0.8
COL7A1-206ENST00000466591 MARK3P27448 753 aa20.05■□□□□ 0.8
COL7A1-206ENST00000466591 SEMA3FQ13275 785 aa20.05■□□□□ 0.8
COL7A1-206ENST00000466591 AAK1Q2M2I8 961 aa20.05■□□□□ 0.8
COL7A1-206ENST00000466591 TRIM71Q2Q1W2 868 aaKnown RBP20.05■□□□□ 0.8
COL7A1-206ENST00000466591 PPP1R18Q6NYC8 613 aa20.05■□□□□ 0.8
COL7A1-206ENST00000466591 DBF4BQ8NFT6 615 aa20.05■□□□□ 0.8
COL7A1-206ENST00000466591 SEPT1Q8WYJ6 367 aa20.05■□□□□ 0.8
COL7A1-206ENST00000466591 TNPO1Q92973 898 aaKnown RBP20.05■□□□□ 0.8
COL7A1-206ENST00000466591 AZI2Q9H6S1 392 aa20.05■□□□□ 0.8
COL7A1-206ENST00000466591 ERAP1Q9NZ08 941 aa20.05■□□□□ 0.8
COL7A1-206ENST00000466591 NRCAMQ92823 1304 aa20.04■□□□□ 0.8
COL7A1-206ENST00000466591 CCDC196A0A1B0GTZ2 297 aa20.04■□□□□ 0.8
COL7A1-206ENST00000466591 GJB5O95377 273 aa20.04■□□□□ 0.8
COL7A1-206ENST00000466591 AKAP17AQ02040 695 aaKnown RBP20.04■□□□□ 0.8
COL7A1-206ENST00000466591 PPFIA1Q13136 1202 aa20.04■□□□□ 0.8
COL7A1-206ENST00000466591 WWC2Q6AWC2 1192 aa20.04■□□□□ 0.8
COL7A1-206ENST00000466591 GLT8D2Q9H1C3 349 aa20.04■□□□□ 0.8
COL7A1-206ENST00000466591 V9GY48 417 aaPredicted RBP20.04■□□□□ 0.8
COL7A1-206ENST00000466591 CNTNAP5Q8WYK1 1306 aa20.03■□□□□ 0.8
COL7A1-206ENST00000466591 UNC80Q8N2C7 3258 aa20.03■□□□□ 0.8
COL7A1-206ENST00000466591 MYO9BQ13459 2157 aa20.03■□□□□ 0.8
COL7A1-206ENST00000466591 hCG_1984214I3L0E3 225 aa20.03■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms