RNA–Protein interactions for RNA: ENST00000461872.6

SYNE1-216, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,075 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-216ENST00000461872 I3L4J1 428 aa7.66□□□□□ -1.18
SYNE1-216ENST00000461872 STX2P32856 288 aa7.66□□□□□ -1.18
SYNE1-216ENST00000461872 INF2Q27J81 1249 aa7.66□□□□□ -1.18
SYNE1-216ENST00000461872 TCP11Q8WWU5 503 aa7.66□□□□□ -1.18
SYNE1-216ENST00000461872 CARD9Q9H257 536 aa7.66□□□□□ -1.18
SYNE1-216ENST00000461872 VCX3AQ9NNX9 186 aa7.66□□□□□ -1.18
SYNE1-216ENST00000461872 LAMB4A4D0S4 1761 aa7.66□□□□□ -1.18
SYNE1-216ENST00000461872 VIMP08670 466 aaKnown RBP7.66□□□□□ -1.18
SYNE1-216ENST00000461872 PPP2R5AQ15172 486 aa7.66□□□□□ -1.18
SYNE1-216ENST00000461872 WDR44Q5JSH3 913 aa7.66□□□□□ -1.18
SYNE1-216ENST00000461872 ZC3H15Q8WU90 426 aaKnown RBP7.66□□□□□ -1.18
SYNE1-216ENST00000461872 XDHP47989 1333 aa7.66□□□□□ -1.18
SYNE1-216ENST00000461872 BTNL10A8MVZ5 291 aa7.66□□□□□ -1.18
SYNE1-216ENST00000461872 USP17L12C9JPN9 530 aa7.66□□□□□ -1.18
SYNE1-216ENST00000461872 USP17L21D6R901 530 aa7.66□□□□□ -1.18
SYNE1-216ENST00000461872 ANTXR2P58335 489 aa7.66□□□□□ -1.18
SYNE1-216ENST00000461872 ENOSF1Q7L5Y1 443 aa7.66□□□□□ -1.18
SYNE1-216ENST00000461872 VSIG1Q86XK7 387 aa7.66□□□□□ -1.18
SYNE1-216ENST00000461872 GFM2Q969S9 779 aaKnown RBP7.66□□□□□ -1.18
SYNE1-216ENST00000461872 CHMP6Q96FZ7 201 aa7.66□□□□□ -1.18
SYNE1-216ENST00000461872 FBXL5Q9UKA1 691 aa7.66□□□□□ -1.18
SYNE1-216ENST00000461872 PDXKO00764 312 aa7.65□□□□□ -1.18
SYNE1-216ENST00000461872 USP11P51784 963 aa7.65□□□□□ -1.18
SYNE1-216ENST00000461872 STK11IPQ8N1F8 1099 aa7.65□□□□□ -1.18
SYNE1-216ENST00000461872 HPS3Q969F9 1004 aa7.65□□□□□ -1.18
SYNE1-216ENST00000461872 KIFC2Q96AC6 838 aa7.65□□□□□ -1.18
SYNE1-216ENST00000461872 FAM20AQ96MK3 541 aa7.65□□□□□ -1.18
SYNE1-216ENST00000461872 PANK4Q9NVE7 773 aa7.65□□□□□ -1.18
SYNE1-216ENST00000461872 CTNND1O60716 968 aaKnown RBP7.65□□□□□ -1.18
SYNE1-216ENST00000461872 SKIP12755 728 aa7.65□□□□□ -1.18
SYNE1-216ENST00000461872 CFAP57Q96MR6 1250 aa7.65□□□□□ -1.18
SYNE1-216ENST00000461872 EPB41L5Q9HCM4 733 aa7.65□□□□□ -1.18
SYNE1-216ENST00000461872 SPATA31A3Q5VYP0 1347 aa7.65□□□□□ -1.18
SYNE1-216ENST00000461872 O00370 1275 aa7.65□□□□□ -1.18
SYNE1-216ENST00000461872 FSBPO95073 299 aa7.65□□□□□ -1.18
SYNE1-216ENST00000461872 CRYMQ14894 314 aa7.65□□□□□ -1.18
SYNE1-216ENST00000461872 ENAHQ8N8S7 591 aaPredicted RBP7.65□□□□□ -1.18
SYNE1-216ENST00000461872 PIP4K2CQ8TBX8 421 aa7.65□□□□□ -1.18
SYNE1-216ENST00000461872 KIF28PB7ZC32 967 aa7.65□□□□□ -1.18
SYNE1-216ENST00000461872 KIAA0391O15091 583 aaKnown RBP7.65□□□□□ -1.18
SYNE1-216ENST00000461872 PSMC2P35998 433 aaKnown RBP7.65□□□□□ -1.18
SYNE1-216ENST00000461872 NR5A1Q13285 461 aa7.65□□□□□ -1.18
SYNE1-216ENST00000461872 SKIDA1Q1XH10 827 aa7.65□□□□□ -1.18
SYNE1-216ENST00000461872 CCDC105Q8IYK2 499 aa7.65□□□□□ -1.18
SYNE1-216ENST00000461872 TEX9Q8N6V9 391 aa7.65□□□□□ -1.18
SYNE1-216ENST00000461872 CCDC89Q8N998 374 aa7.65□□□□□ -1.18
SYNE1-216ENST00000461872 ISCUQ9H1K1 167 aa7.65□□□□□ -1.18
SYNE1-216ENST00000461872 KBTBD4Q9NVX7 518 aa7.65□□□□□ -1.18
SYNE1-216ENST00000461872 MYBL1P10243 752 aa7.65□□□□□ -1.19
SYNE1-216ENST00000461872 PLCG1P19174 1290 aa7.65□□□□□ -1.19
SYNE1-216ENST00000461872 ADORA1P30542 326 aa7.65□□□□□ -1.19
SYNE1-216ENST00000461872 IRAK1P51617 712 aa7.65□□□□□ -1.19
SYNE1-216ENST00000461872 ITIH4Q14624 930 aa7.65□□□□□ -1.19
SYNE1-216ENST00000461872 MAGEC3Q8TD91 643 aa7.65□□□□□ -1.19
SYNE1-216ENST00000461872 DHX36Q9H2U1 1008 aaKnown RBP7.65□□□□□ -1.19
SYNE1-216ENST00000461872 MRPL44Q9H9J2 332 aaKnown RBP7.65□□□□□ -1.19
SYNE1-216ENST00000461872 RAD21O60216 631 aa7.65□□□□□ -1.19
SYNE1-216ENST00000461872 TRPC3Q13507 836 aa7.65□□□□□ -1.19
SYNE1-216ENST00000461872 IL25Q9H293 177 aa7.65□□□□□ -1.19
SYNE1-216ENST00000461872 ARHGEF10LQ9HCE6 1279 aa7.65□□□□□ -1.19
SYNE1-216ENST00000461872 NR2F2P24468 414 aa7.65□□□□□ -1.19
SYNE1-216ENST00000461872 MDH1P40925 334 aaKnown RBP7.65□□□□□ -1.19
SYNE1-216ENST00000461872 DR1Q01658 176 aa7.65□□□□□ -1.19
SYNE1-216ENST00000461872 PDXDC1Q6P996 788 aa7.65□□□□□ -1.19
SYNE1-216ENST00000461872 NLRP14Q86W24 1093 aa7.65□□□□□ -1.19
SYNE1-216ENST00000461872 GPBP1Q86WP2 473 aa7.65□□□□□ -1.19
SYNE1-216ENST00000461872 CFAP61Q8NHU2 1237 aa7.65□□□□□ -1.19
SYNE1-216ENST00000461872 APBB2Q92870 758 aa7.65□□□□□ -1.19
SYNE1-216ENST00000461872 MCUR1Q96AQ8 359 aa7.65□□□□□ -1.19
SYNE1-216ENST00000461872 TRIM6Q9C030 488 aaPredicted RBP7.65□□□□□ -1.19
SYNE1-216ENST00000461872 ZMYND12Q9H0C1 365 aa7.65□□□□□ -1.19
SYNE1-216ENST00000461872 GREM2Q9H772 168 aa7.65□□□□□ -1.19
SYNE1-216ENST00000461872 DDX25Q9UHL0 483 aaKnown RBP7.65□□□□□ -1.19
SYNE1-216ENST00000461872 CYP27B1O15528 508 aa7.64□□□□□ -1.19
SYNE1-216ENST00000461872 ZBTB16Q05516 673 aa7.64□□□□□ -1.19
SYNE1-216ENST00000461872 DHX9Q08211 1270 aaKnown RBP7.64□□□□□ -1.19
SYNE1-216ENST00000461872 MYBPC2Q14324 1141 aa7.64□□□□□ -1.19
SYNE1-216ENST00000461872 FAM83BQ5T0W9 1011 aa7.64□□□□□ -1.19
SYNE1-216ENST00000461872 SGSM3Q96HU1 749 aa7.64□□□□□ -1.19
SYNE1-216ENST00000461872 RBM17Q96I25 401 aaKnown RBP7.64□□□□□ -1.19
SYNE1-216ENST00000461872 SUCLA2Q9P2R7 463 aaPredicted RBP7.64□□□□□ -1.19
SYNE1-216ENST00000461872 SCN11AQ9UI33 1791 aa7.64□□□□□ -1.19
SYNE1-216ENST00000461872 FXR2P51116 673 aaKnown RBP eCLIP7.64□□□□□ -1.19
SYNE1-216ENST00000461872 NTRK3Q16288 839 aa7.64□□□□□ -1.19
SYNE1-216ENST00000461872 CRELD2Q6UXH1 353 aaPredicted RBP7.64□□□□□ -1.19
SYNE1-216ENST00000461872 RFFLQ8WZ73 363 aa7.64□□□□□ -1.19
SYNE1-216ENST00000461872 BLZF1Q9H2G9 400 aa7.64□□□□□ -1.19
SYNE1-216ENST00000461872 STOML1Q9UBI4 398 aa7.64□□□□□ -1.19
SYNE1-216ENST00000461872 ADAMTS2O95450 1211 aa7.64□□□□□ -1.19
SYNE1-216ENST00000461872 GHRP10912 638 aa7.64□□□□□ -1.19
SYNE1-216ENST00000461872 PCK1P35558 622 aa7.64□□□□□ -1.19
SYNE1-216ENST00000461872 DNAJC10Q8IXB1 793 aa7.64□□□□□ -1.19
SYNE1-216ENST00000461872 CENPTQ96BT3 561 aa7.64□□□□□ -1.19
SYNE1-216ENST00000461872 TSNARE1Q96NA8 513 aa7.64□□□□□ -1.19
SYNE1-216ENST00000461872 MYL10Q9BUA6 226 aa7.64□□□□□ -1.19
SYNE1-216ENST00000461872 TUBGCP6Q96RT7 1819 aa7.64□□□□□ -1.19
SYNE1-216ENST00000461872 GSG1L2A8MUP6 293 aa7.64□□□□□ -1.19
SYNE1-216ENST00000461872 RASGRF2O14827 1237 aa7.64□□□□□ -1.19
SYNE1-216ENST00000461872 ECEL1O95672 775 aa7.64□□□□□ -1.19
SYNE1-216ENST00000461872 EHHADHQ08426 723 aa7.64□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms