RNA–Protein interactions for RNA: ENST00000454569.5

SCN9A-205, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,585 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-205ENST00000454569 PRPHP41219 470 aa12.41□□□□□ -0.42
SCN9A-205ENST00000454569 MAP2K5Q13163 448 aa12.41□□□□□ -0.42
SCN9A-205ENST00000454569 ORC2Q13416 577 aaPredicted RBP12.41□□□□□ -0.42
SCN9A-205ENST00000454569 SNW1Q13573 536 aaKnown RBP12.41□□□□□ -0.42
SCN9A-205ENST00000454569 DTHD1Q6ZMT9 781 aa12.41□□□□□ -0.42
SCN9A-205ENST00000454569 DPP9Q86TI2 863 aa12.41□□□□□ -0.42
SCN9A-205ENST00000454569 PDCD7Q8N8D1 485 aaKnown RBP12.41□□□□□ -0.42
SCN9A-205ENST00000454569 FSIP1Q8NA03 581 aa12.41□□□□□ -0.42
SCN9A-205ENST00000454569 MORC4Q8TE76 937 aa12.41□□□□□ -0.42
SCN9A-205ENST00000454569 SYMPKQ92797 1274 aaKnown RBP12.41□□□□□ -0.42
SCN9A-205ENST00000454569 SLC5A5Q92911 643 aa12.41□□□□□ -0.42
SCN9A-205ENST00000454569 MAML3Q96JK9 1138 aa12.41□□□□□ -0.42
SCN9A-205ENST00000454569 MMTAG2Q9BU76 263 aaKnown RBP12.41□□□□□ -0.42
SCN9A-205ENST00000454569 KATNBL1Q9H079 304 aa12.41□□□□□ -0.42
SCN9A-205ENST00000454569 AGO4Q9HCK5 861 aaKnown RBP12.41□□□□□ -0.42
SCN9A-205ENST00000454569 VAV3Q9UKW4 847 aa12.41□□□□□ -0.42
SCN9A-205ENST00000454569 A0A1W2PQ27 194 aa12.4□□□□□ -0.42
SCN9A-205ENST00000454569 A0A1W2PQ64 194 aa12.4□□□□□ -0.42
SCN9A-205ENST00000454569 A0A1W2PQD8 194 aa12.4□□□□□ -0.42
SCN9A-205ENST00000454569 DDX39AO00148 427 aaKnown RBP12.4□□□□□ -0.42
SCN9A-205ENST00000454569 LAD1O00515 517 aa12.4□□□□□ -0.42
SCN9A-205ENST00000454569 TNPO2O14787 897 aaKnown RBP12.4□□□□□ -0.42
SCN9A-205ENST00000454569 TRAK2O60296 914 aa12.4□□□□□ -0.42
SCN9A-205ENST00000454569 PSMD10O75832 226 aa12.4□□□□□ -0.42
SCN9A-205ENST00000454569 PFKFB1P16118 471 aa12.4□□□□□ -0.42
SCN9A-205ENST00000454569 CYP2B6P20813 491 aa12.4□□□□□ -0.42
SCN9A-205ENST00000454569 CMA1P23946 247 aa12.4□□□□□ -0.42
SCN9A-205ENST00000454569 SP3Q02447 781 aa12.4□□□□□ -0.42
SCN9A-205ENST00000454569 MTMR1Q13613 665 aa12.4□□□□□ -0.42
SCN9A-205ENST00000454569 STXBP2Q15833 593 aa12.4□□□□□ -0.42
SCN9A-205ENST00000454569 ECM1Q16610 540 aa12.4□□□□□ -0.42
SCN9A-205ENST00000454569 PRAMEF19Q5SWL8 479 aa12.4□□□□□ -0.42
SCN9A-205ENST00000454569 SEPT14Q6ZU15 432 aa12.4□□□□□ -0.42
SCN9A-205ENST00000454569 ARMCX2Q7L311 632 aa12.4□□□□□ -0.42
SCN9A-205ENST00000454569 NIPA1Q7RTP0 329 aa12.4□□□□□ -0.42
SCN9A-205ENST00000454569 FBXO16Q8IX29 292 aaPredicted RBP12.4□□□□□ -0.42
SCN9A-205ENST00000454569 IGSF22Q8N9C0 903 aa12.4□□□□□ -0.42
SCN9A-205ENST00000454569 CD99L2Q8TCZ2 262 aa12.4□□□□□ -0.42
SCN9A-205ENST00000454569 FERMT2Q96AC1 680 aa12.4□□□□□ -0.42
SCN9A-205ENST00000454569 NAP1L4Q99733 375 aaKnown RBP12.4□□□□□ -0.42
SCN9A-205ENST00000454569 ADD3Q9UEY8 706 aaKnown RBP12.4□□□□□ -0.42
SCN9A-205ENST00000454569 PCDHA12Q9UN75 941 aa12.4□□□□□ -0.42
SCN9A-205ENST00000454569 HPSEQ9Y251 543 aa12.4□□□□□ -0.42
SCN9A-205ENST00000454569 A0A087WWV3 80 aa12.39□□□□□ -0.43
SCN9A-205ENST00000454569 SPATA31C2B4DYI2 1134 aa12.39□□□□□ -0.43
SCN9A-205ENST00000454569 GPR25O00155 361 aa12.39□□□□□ -0.43
SCN9A-205ENST00000454569 IPO5O00410 1097 aaKnown RBP12.39□□□□□ -0.43
SCN9A-205ENST00000454569 EIF3JO75822 258 aaKnown RBP12.39□□□□□ -0.43
SCN9A-205ENST00000454569 PDE4DQ08499 809 aa12.39□□□□□ -0.43
SCN9A-205ENST00000454569 CSPP1Q1MSJ5 1256 aa12.39□□□□□ -0.43
SCN9A-205ENST00000454569 B3GNT9Q6UX72 402 aa12.39□□□□□ -0.43
SCN9A-205ENST00000454569 OTOP1Q7RTM1 612 aa12.39□□□□□ -0.43
SCN9A-205ENST00000454569 FMR1NBQ8N0W7 255 aaPredicted RBP12.39□□□□□ -0.43
SCN9A-205ENST00000454569 JMYQ8N9B5 988 aa12.39□□□□□ -0.43
SCN9A-205ENST00000454569 PLIN2Q99541 437 aa12.39□□□□□ -0.43
SCN9A-205ENST00000454569 ZNF577Q9BSK1 485 aa12.39□□□□□ -0.43
SCN9A-205ENST00000454569 UNC45AQ9H3U1 944 aa12.39□□□□□ -0.43
SCN9A-205ENST00000454569 TMEM63CQ9P1W3 806 aa12.39□□□□□ -0.43
SCN9A-205ENST00000454569 FAM237AA0A1B0GTK4 181 aa12.39□□□□□ -0.43
SCN9A-205ENST00000454569 GOLGA6L4A6NEF3 574 aa12.39□□□□□ -0.43
SCN9A-205ENST00000454569 TBX3O15119 743 aa12.39□□□□□ -0.43
SCN9A-205ENST00000454569 MARCH6O60337 910 aa12.39□□□□□ -0.43
SCN9A-205ENST00000454569 IGHA2P01877 340 aa12.39□□□□□ -0.43
SCN9A-205ENST00000454569 KCNA2P16389 499 aa12.39□□□□□ -0.43
SCN9A-205ENST00000454569 LONP1P36776 959 aaKnown RBP12.39□□□□□ -0.43
SCN9A-205ENST00000454569 GJC2Q5T442 439 aaPredicted RBP12.39□□□□□ -0.43
SCN9A-205ENST00000454569 TAPT1Q6NXT6 567 aa12.39□□□□□ -0.43
SCN9A-205ENST00000454569 XRRA1Q6P2D8 792 aa12.39□□□□□ -0.43
SCN9A-205ENST00000454569 MAMDC4Q6UXC1 1216 aa12.39□□□□□ -0.43
SCN9A-205ENST00000454569 PDILTQ8N807 584 aa12.39□□□□□ -0.43
SCN9A-205ENST00000454569 MRPS27Q92552 414 aaKnown RBP12.39□□□□□ -0.43
SCN9A-205ENST00000454569 COPS5Q92905 334 aa12.39□□□□□ -0.43
SCN9A-205ENST00000454569 FAM20AQ96MK3 541 aa12.39□□□□□ -0.43
SCN9A-205ENST00000454569 DACT1Q9NYF0 836 aa12.39□□□□□ -0.43
SCN9A-205ENST00000454569 POTEFA5A3E0 1075 aa12.38□□□□□ -0.43
SCN9A-205ENST00000454569 ADCY6O43306 1168 aa12.38□□□□□ -0.43
SCN9A-205ENST00000454569 CHMP2AO43633 222 aa12.38□□□□□ -0.43
SCN9A-205ENST00000454569 CCNE2O96020 404 aa12.38□□□□□ -0.43
SCN9A-205ENST00000454569 HOXC6P09630 235 aa12.38□□□□□ -0.43
SCN9A-205ENST00000454569 ICAM3P32942 547 aa12.38□□□□□ -0.43
SCN9A-205ENST00000454569 CYP2C19P33261 490 aa12.38□□□□□ -0.43
SCN9A-205ENST00000454569 FLT3LGP49771 235 aa12.38□□□□□ -0.43
SCN9A-205ENST00000454569 SETQ01105 290 aaPredicted RBP12.38□□□□□ -0.43
SCN9A-205ENST00000454569 PRKCZQ05513 592 aa12.38□□□□□ -0.43
SCN9A-205ENST00000454569 KARSQ15046 597 aaKnown RBP12.38□□□□□ -0.43
SCN9A-205ENST00000454569 LY6KQ17RY6 165 aa12.38□□□□□ -0.43
SCN9A-205ENST00000454569 LRCH2Q5VUJ6 765 aa12.38□□□□□ -0.43
SCN9A-205ENST00000454569 NCAPH2Q6IBW4 605 aa12.38□□□□□ -0.43
SCN9A-205ENST00000454569 ZNF296Q8WUU4 475 aaPredicted RBP12.38□□□□□ -0.43
SCN9A-205ENST00000454569 GPRASP2Q96D09 838 aa12.38□□□□□ -0.43
SCN9A-205ENST00000454569 PNMA5Q96PV4 448 aa12.38□□□□□ -0.43
SCN9A-205ENST00000454569 TINF2Q9BSI4 451 aa12.38□□□□□ -0.43
SCN9A-205ENST00000454569 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.38□□□□□ -0.43
SCN9A-205ENST00000454569 LRWD1Q9UFC0 647 aa12.38□□□□□ -0.43
SCN9A-205ENST00000454569 DIS3Q9Y2L1 958 aaKnown RBP12.38□□□□□ -0.43
SCN9A-205ENST00000454569 C11orf97A0A1B0GVM6 126 aaPredicted RBP12.37□□□□□ -0.43
SCN9A-205ENST00000454569 FOXN1O15353 648 aa12.37□□□□□ -0.43
SCN9A-205ENST00000454569 MED24O75448 989 aa12.37□□□□□ -0.43
SCN9A-205ENST00000454569 ATN1P54259 1190 aaPredicted RBP12.37□□□□□ -0.43
SCN9A-205ENST00000454569 FCGRTP55899 365 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms