RNA–Protein interactions for RNA: ENST00000439029.5

SMPD4-208, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 4

Gene SMPD4, Length 566 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-208ENST00000439029 ITGB1P05556 798 aa11.48□□□□□ -0.57
SMPD4-208ENST00000439029 HSP90AB4PQ58FF6 505 aa11.48□□□□□ -0.57
SMPD4-208ENST00000439029 KIAA2013Q8IYS2 634 aa11.48□□□□□ -0.57
SMPD4-208ENST00000439029 IFNL3Q8IZI9 196 aa11.48□□□□□ -0.57
SMPD4-208ENST00000439029 KREMEN2Q8NCW0 462 aa11.48□□□□□ -0.57
SMPD4-208ENST00000439029 KCNG4Q8TDN1 519 aa11.48□□□□□ -0.57
SMPD4-208ENST00000439029 ATP6V0A1Q93050 837 aa11.48□□□□□ -0.57
SMPD4-208ENST00000439029 MYH7BA7E2Y1 1941 aa11.48□□□□□ -0.57
SMPD4-208ENST00000439029 ACACBO00763 2458 aa11.47□□□□□ -0.57
SMPD4-208ENST00000439029 C17orf102A2RUQ5 167 aa11.47□□□□□ -0.57
SMPD4-208ENST00000439029 TSPY2A6NKD2 308 aa11.47□□□□□ -0.57
SMPD4-208ENST00000439029 B4DLN1 442 aa11.47□□□□□ -0.57
SMPD4-208ENST00000439029 MRPL12P52815 198 aaKnown RBP11.47□□□□□ -0.57
SMPD4-208ENST00000439029 NUBP1P53384 320 aa11.47□□□□□ -0.57
SMPD4-208ENST00000439029 KLHL23Q8NBE8 558 aa11.47□□□□□ -0.57
SMPD4-208ENST00000439029 VN1R2Q8NFZ6 395 aa11.47□□□□□ -0.57
SMPD4-208ENST00000439029 SPPL3Q8TCT6 385 aa11.47□□□□□ -0.57
SMPD4-208ENST00000439029 DCAF4Q8WV16 495 aa11.47□□□□□ -0.57
SMPD4-208ENST00000439029 POF1BQ8WVV4 589 aa11.47□□□□□ -0.57
SMPD4-208ENST00000439029 PPP2R3CQ969Q6 453 aa11.47□□□□□ -0.57
SMPD4-208ENST00000439029 TLE6Q9H808 572 aa11.47□□□□□ -0.57
SMPD4-208ENST00000439029 TSHZ2Q9NRE2 1034 aa11.47□□□□□ -0.57
SMPD4-208ENST00000439029 COL20A1Q9P218 1284 aa11.47□□□□□ -0.57
SMPD4-208ENST00000439029 CDH22Q9UJ99 828 aa11.47□□□□□ -0.57
SMPD4-208ENST00000439029 RWDD3Q9Y3V2 267 aa11.47□□□□□ -0.57
SMPD4-208ENST00000439029 SUPT16HQ9Y5B9 1047 aaKnown RBP11.47□□□□□ -0.57
SMPD4-208ENST00000439029 MRPL42Q9Y6G3 142 aaKnown RBP11.47□□□□□ -0.57
SMPD4-208ENST00000439029 CEP250Q9BV73 2442 aa11.47□□□□□ -0.57
SMPD4-208ENST00000439029 BRD1O95696 1058 aa11.46□□□□□ -0.57
SMPD4-208ENST00000439029 IBSPP21815 317 aaPredicted RBP11.46□□□□□ -0.57
SMPD4-208ENST00000439029 CTDSPL2Q05D32 466 aa11.46□□□□□ -0.57
SMPD4-208ENST00000439029 PPARAQ07869 468 aa11.46□□□□□ -0.57
SMPD4-208ENST00000439029 LAMC2Q13753 1193 aa11.46□□□□□ -0.57
SMPD4-208ENST00000439029 PAN2Q504Q3 1202 aaKnown RBP11.46□□□□□ -0.57
SMPD4-208ENST00000439029 BTNL9Q6UXG8 535 aa11.46□□□□□ -0.57
SMPD4-208ENST00000439029 PPTC7Q8NI37 304 aa11.46□□□□□ -0.57
SMPD4-208ENST00000439029 MICAL1Q8TDZ2 1067 aa11.46□□□□□ -0.57
SMPD4-208ENST00000439029 SUSD6Q92537 303 aa11.46□□□□□ -0.57
SMPD4-208ENST00000439029 APPBP2Q92624 585 aa11.46□□□□□ -0.57
SMPD4-208ENST00000439029 CLP1Q92989 425 aaKnown RBP11.46□□□□□ -0.57
SMPD4-208ENST00000439029 ZFP91Q96JP5 570 aaPredicted RBP11.46□□□□□ -0.57
SMPD4-208ENST00000439029 CPVLQ9H3G5 476 aa11.46□□□□□ -0.57
SMPD4-208ENST00000439029 RC3H2Q9HBD1 1191 aaKnown RBP11.46□□□□□ -0.57
SMPD4-208ENST00000439029 MRVI1Q9Y6F6 885 aa11.46□□□□□ -0.57
SMPD4-208ENST00000439029 PATL2C9JE40 543 aaKnown RBP11.45□□□□□ -0.58
SMPD4-208ENST00000439029 RNF113AO15541 343 aaKnown RBP11.45□□□□□ -0.58
SMPD4-208ENST00000439029 RANBP6O60518 1105 aaKnown RBP11.45□□□□□ -0.58
SMPD4-208ENST00000439029 SLC3A2P08195 630 aaKnown RBP11.45□□□□□ -0.58
SMPD4-208ENST00000439029 SMIM10L2AP0DMW4 78 aa11.45□□□□□ -0.58
SMPD4-208ENST00000439029 SMIM10L2BP0DMW5 78 aa11.45□□□□□ -0.58
SMPD4-208ENST00000439029 GHRP10912 638 aa11.45□□□□□ -0.58
SMPD4-208ENST00000439029 EIF2AK2P19525 551 aaKnown RBP11.45□□□□□ -0.58
SMPD4-208ENST00000439029 STXBP2Q15833 593 aa11.45□□□□□ -0.58
SMPD4-208ENST00000439029 HSDL1Q3SXM5 330 aa11.45□□□□□ -0.58
SMPD4-208ENST00000439029 MCTP2Q6DN12 878 aa11.45□□□□□ -0.58
SMPD4-208ENST00000439029 ASTLQ6HA08 431 aaPredicted RBP11.45□□□□□ -0.58
SMPD4-208ENST00000439029 SYTL5Q8TDW5 730 aaPredicted RBP11.45□□□□□ -0.58
SMPD4-208ENST00000439029 SPATA33Q96N06 139 aa11.45□□□□□ -0.58
SMPD4-208ENST00000439029 SEC62Q99442 399 aaKnown RBP11.45□□□□□ -0.58
SMPD4-208ENST00000439029 PLVAPQ9BX97 442 aa11.45□□□□□ -0.58
SMPD4-208ENST00000439029 RNPEPQ9H4A4 650 aa11.45□□□□□ -0.58
SMPD4-208ENST00000439029 SETD4Q9NVD3 440 aa11.45□□□□□ -0.58
SMPD4-208ENST00000439029 VPS13AQ96RL7 3174 aa11.45□□□□□ -0.58
SMPD4-208ENST00000439029 KIAA1217Q5T5P2 1943 aa11.45□□□□□ -0.58
SMPD4-208ENST00000439029 ENPP3O14638 875 aa11.44□□□□□ -0.58
SMPD4-208ENST00000439029 SMARCA5O60264 1052 aaPredicted RBP11.44□□□□□ -0.58
SMPD4-208ENST00000439029 ASGR2P07307 311 aa11.44□□□□□ -0.58
SMPD4-208ENST00000439029 ATF7P17544 494 aaPredicted RBP11.44□□□□□ -0.58
SMPD4-208ENST00000439029 GATMP50440 423 aa11.44□□□□□ -0.58
SMPD4-208ENST00000439029 TSHZ3Q63HK5 1081 aa11.44□□□□□ -0.58
SMPD4-208ENST00000439029 LLGL2Q6P1M3 1020 aa11.44□□□□□ -0.58
SMPD4-208ENST00000439029 FLCNQ8NFG4 579 aa11.44□□□□□ -0.58
SMPD4-208ENST00000439029 NSUN6Q8TEA1 469 aaKnown RBP11.44□□□□□ -0.58
SMPD4-208ENST00000439029 APBB2Q92870 758 aa11.44□□□□□ -0.58
SMPD4-208ENST00000439029 EMID1Q96A84 441 aaPredicted RBP11.44□□□□□ -0.58
SMPD4-208ENST00000439029 RMDN3Q96TC7 470 aa11.44□□□□□ -0.58
SMPD4-208ENST00000439029 C16orf70Q9BSU1 422 aa11.44□□□□□ -0.58
SMPD4-208ENST00000439029 NAPBQ9H115 298 aa11.44□□□□□ -0.58
SMPD4-208ENST00000439029 MFSD1Q9H3U5 465 aa11.44□□□□□ -0.58
SMPD4-208ENST00000439029 KMT2BQ9UMN6 2715 aaPredicted RBP11.44□□□□□ -0.58
SMPD4-208ENST00000439029 PI15O43692 258 aa11.43□□□□□ -0.58
SMPD4-208ENST00000439029 PPFIA4O75335 1185 aa11.43□□□□□ -0.58
SMPD4-208ENST00000439029 DGKIO75912 1065 aa11.43□□□□□ -0.58
SMPD4-208ENST00000439029 GGPS1O95749 300 aa11.43□□□□□ -0.58
SMPD4-208ENST00000439029 CHRNA1P02708 482 aa11.43□□□□□ -0.58
SMPD4-208ENST00000439029 GOLGA8HP0CJ92 632 aa11.43□□□□□ -0.58
SMPD4-208ENST00000439029 MYCLP12524 364 aaPredicted RBP11.43□□□□□ -0.58
SMPD4-208ENST00000439029 GNAT2P19087 354 aa11.43□□□□□ -0.58
SMPD4-208ENST00000439029 TECP42680 631 aa11.43□□□□□ -0.58
SMPD4-208ENST00000439029 MTMR3Q13615 1198 aa11.43□□□□□ -0.58
SMPD4-208ENST00000439029 ARHGEF16Q5VV41 709 aa11.43□□□□□ -0.58
SMPD4-208ENST00000439029 MYSM1Q5VVJ2 828 aa11.43□□□□□ -0.58
SMPD4-208ENST00000439029 ZNF689Q96CS4 500 aaPredicted RBP11.43□□□□□ -0.58
SMPD4-208ENST00000439029 NEK1Q96PY6 1258 aa11.43□□□□□ -0.58
SMPD4-208ENST00000439029 HINFPQ9BQA5 517 aa11.43□□□□□ -0.58
SMPD4-208ENST00000439029 TMEM47Q9BQJ4 181 aa11.43□□□□□ -0.58
SMPD4-208ENST00000439029 NACAP1Q9BZK3 213 aa11.43□□□□□ -0.58
SMPD4-208ENST00000439029 BCAS3Q9H6U6 928 aa11.43□□□□□ -0.58
SMPD4-208ENST00000439029 RALYQ9UKM9 306 aaKnown RBP11.43□□□□□ -0.58
SMPD4-208ENST00000439029 DDX52Q9Y2R4 599 aaKnown RBP eCLIP11.43□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms