RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 PRPF3O43395 683 aaKnown RBP18.64■□□□□ 0.57
PTPRF-209ENST00000438120 XPOTO43592 962 aaKnown RBP18.64■□□□□ 0.57
PTPRF-209ENST00000438120 GCFC2P16383 781 aaKnown RBP18.64■□□□□ 0.57
PTPRF-209ENST00000438120 MMEL1Q495T6 779 aa18.63■□□□□ 0.57
PTPRF-209ENST00000438120 BBOF1Q8ND07 529 aa18.63■□□□□ 0.57
PTPRF-209ENST00000438120 CPVLQ9H3G5 476 aa18.63■□□□□ 0.57
PTPRF-209ENST00000438120 HEXIM1O94992 359 aaKnown RBP18.63■□□□□ 0.57
PTPRF-209ENST00000438120 USP6P35125 1406 aa18.63■□□□□ 0.57
PTPRF-209ENST00000438120 CEP170Q5SW79 1584 aa18.63■□□□□ 0.57
PTPRF-209ENST00000438120 ZNF341Q9BYN7 854 aa18.63■□□□□ 0.57
PTPRF-209ENST00000438120 C21orf2O43822 256 aa18.63■□□□□ 0.57
PTPRF-209ENST00000438120 PTPREP23469 700 aa18.63■□□□□ 0.57
PTPRF-209ENST00000438120 MCAMP43121 646 aa18.63■□□□□ 0.57
PTPRF-209ENST00000438120 ARHGAP4P98171 946 aa18.63■□□□□ 0.57
PTPRF-209ENST00000438120 GRAPQ13588 217 aa18.63■□□□□ 0.57
PTPRF-209ENST00000438120 OR6B2Q6IFH4 312 aa18.63■□□□□ 0.57
PTPRF-209ENST00000438120 SIRT2Q8IXJ6 389 aa18.63■□□□□ 0.57
PTPRF-209ENST00000438120 TTLL11Q8NHH1 800 aa18.63■□□□□ 0.57
PTPRF-209ENST00000438120 GRAPLQ8TC17 118 aaPredicted RBP18.63■□□□□ 0.57
PTPRF-209ENST00000438120 PAGE5Q96GU1 130 aa18.63■□□□□ 0.57
PTPRF-209ENST00000438120 FIS1Q9Y3D6 152 aa18.63■□□□□ 0.57
PTPRF-209ENST00000438120 ERVK-7P63135 1459 aa18.63■□□□□ 0.57
PTPRF-209ENST00000438120 NLRP1Q9C000 1473 aa18.63■□□□□ 0.57
PTPRF-209ENST00000438120 METTL23Q86XA0 190 aa18.63■□□□□ 0.57
PTPRF-209ENST00000438120 DHX36Q9H2U1 1008 aaKnown RBP18.63■□□□□ 0.57
PTPRF-209ENST00000438120 LIG3P49916 1009 aa18.63■□□□□ 0.57
PTPRF-209ENST00000438120 ZKSCAN8Q15776 578 aaPredicted RBP18.63■□□□□ 0.57
PTPRF-209ENST00000438120 LRRC43Q8N309 656 aa18.63■□□□□ 0.57
PTPRF-209ENST00000438120 DNAAF3Q8N9W5 541 aa18.63■□□□□ 0.57
PTPRF-209ENST00000438120 NLRP4Q96MN2 994 aa18.63■□□□□ 0.57
PTPRF-209ENST00000438120 PRR36Q9H6K5 1346 aa18.63■□□□□ 0.57
PTPRF-209ENST00000438120 IFNAR1P17181 557 aa18.62■□□□□ 0.57
PTPRF-209ENST00000438120 EIF4A3P38919 411 aaKnown RBP18.62■□□□□ 0.57
PTPRF-209ENST00000438120 BASP1P80723 227 aaKnown RBP18.62■□□□□ 0.57
PTPRF-209ENST00000438120 PDXDC2PQ6P474 469 aa18.62■□□□□ 0.57
PTPRF-209ENST00000438120 CHMP6Q96FZ7 201 aa18.62■□□□□ 0.57
PTPRF-209ENST00000438120 PARVGQ9HBI0 331 aa18.62■□□□□ 0.57
PTPRF-209ENST00000438120 PPME1Q9Y570 386 aa18.62■□□□□ 0.57
PTPRF-209ENST00000438120 PLEKHG1Q9ULL1 1385 aa18.62■□□□□ 0.57
PTPRF-209ENST00000438120 NPHP4O75161 1426 aaPredicted RBP18.62■□□□□ 0.57
PTPRF-209ENST00000438120 ZSCAN20P17040 1043 aaPredicted RBP18.62■□□□□ 0.57
PTPRF-209ENST00000438120 SLCO1A2P46721 670 aa18.62■□□□□ 0.57
PTPRF-209ENST00000438120 RCN2Q14257 317 aa18.62■□□□□ 0.57
PTPRF-209ENST00000438120 CCDC93Q567U6 631 aa18.62■□□□□ 0.57
PTPRF-209ENST00000438120 TMEM206Q9H813 350 aa18.62■□□□□ 0.57
PTPRF-209ENST00000438120 DAAM1Q9Y4D1 1078 aa18.62■□□□□ 0.57
PTPRF-209ENST00000438120 PFDN6O15212 129 aa18.62■□□□□ 0.57
PTPRF-209ENST00000438120 ZNF500O60304 480 aaPredicted RBP18.62■□□□□ 0.57
PTPRF-209ENST00000438120 CLTAP09496 248 aa18.62■□□□□ 0.57
PTPRF-209ENST00000438120 CACTINQ8WUQ7 758 aaKnown RBP18.62■□□□□ 0.57
PTPRF-209ENST00000438120 TBK1Q9UHD2 729 aa18.62■□□□□ 0.57
PTPRF-209ENST00000438120 EFCAB6Q5THR3 1501 aa18.62■□□□□ 0.57
PTPRF-209ENST00000438120 CYP27A1Q02318 531 aa18.62■□□□□ 0.57
PTPRF-209ENST00000438120 SLC12A1Q13621 1099 aa18.62■□□□□ 0.57
PTPRF-209ENST00000438120 RAB3IPQ96QF0 476 aaPredicted RBP18.62■□□□□ 0.57
PTPRF-209ENST00000438120 NHEJ1Q9H9Q4 299 aaPredicted RBP18.62■□□□□ 0.57
PTPRF-209ENST00000438120 IPO11Q9UI26 975 aaKnown RBP18.62■□□□□ 0.57
PTPRF-209ENST00000438120 XPAP23025 273 aaPredicted RBP18.62■□□□□ 0.57
PTPRF-209ENST00000438120 TMTC4Q5T4D3 741 aa18.62■□□□□ 0.57
PTPRF-209ENST00000438120 DNAJC24Q6P3W2 148 aa18.62■□□□□ 0.57
PTPRF-209ENST00000438120 ARMC9Q7Z3E5 817 aa18.62■□□□□ 0.57
PTPRF-209ENST00000438120 ABCF3Q9NUQ8 709 aa18.62■□□□□ 0.57
PTPRF-209ENST00000438120 FAM196BA6NMK8 535 aa18.61■□□□□ 0.57
PTPRF-209ENST00000438120 IL1RL1Q01638 556 aa18.61■□□□□ 0.57
PTPRF-209ENST00000438120 TMED2Q15363 201 aa18.61■□□□□ 0.57
PTPRF-209ENST00000438120 SYNE4Q8N205 404 aa18.61■□□□□ 0.57
PTPRF-209ENST00000438120 KCTD6Q8NC69 237 aa18.61■□□□□ 0.57
PTPRF-209ENST00000438120 SLC17A8Q8NDX2 589 aa18.61■□□□□ 0.57
PTPRF-209ENST00000438120 ERVV-1B6SEH8 477 aa18.61■□□□□ 0.57
PTPRF-209ENST00000438120 MMP10P09238 476 aa18.61■□□□□ 0.57
PTPRF-209ENST00000438120 TRMT2AQ8IZ69 625 aaKnown RBP18.61■□□□□ 0.57
PTPRF-209ENST00000438120 PIGOQ8TEQ8 1089 aa18.61■□□□□ 0.57
PTPRF-209ENST00000438120 POLD4Q9HCU8 107 aa18.61■□□□□ 0.57
PTPRF-209ENST00000438120 DARS2Q6PI48 645 aaKnown RBP18.61■□□□□ 0.57
PTPRF-209ENST00000438120 HEXIM2Q96MH2 286 aaKnown RBP18.61■□□□□ 0.57
PTPRF-209ENST00000438120 STK17AQ9UEE5 414 aa18.61■□□□□ 0.57
PTPRF-209ENST00000438120 GPC4O75487 556 aa18.61■□□□□ 0.57
PTPRF-209ENST00000438120 GH2P01242 217 aa18.61■□□□□ 0.57
PTPRF-209ENST00000438120 KIAA1841Q6NSI8 718 aa18.61■□□□□ 0.57
PTPRF-209ENST00000438120 TMC4Q7Z404 712 aa18.61■□□□□ 0.57
PTPRF-209ENST00000438120 JPH2Q9BR39 696 aaPredicted RBP18.61■□□□□ 0.57
PTPRF-209ENST00000438120 FAM49AQ9H0Q0 323 aaPredicted RBP18.61■□□□□ 0.57
PTPRF-209ENST00000438120 ATG3Q9NT62 314 aa18.61■□□□□ 0.57
PTPRF-209ENST00000438120 RWDD2AQ9UIY3 292 aa18.61■□□□□ 0.57
PTPRF-209ENST00000438120 SERPINB6P35237 376 aa18.61■□□□□ 0.57
PTPRF-209ENST00000438120 TCP11X2Q5H9J9 407 aa18.6■□□□□ 0.57
PTPRF-209ENST00000438120 SEPT12Q8IYM1 358 aa18.6■□□□□ 0.57
PTPRF-209ENST00000438120 BHMT2Q9H2M3 363 aa18.6■□□□□ 0.57
PTPRF-209ENST00000438120 INTS9Q9NV88 658 aaKnown RBP18.6■□□□□ 0.57
PTPRF-209ENST00000438120 BCAP29Q9UHQ4 241 aa18.6■□□□□ 0.57
PTPRF-209ENST00000438120 SRPRBQ9Y5M8 271 aaKnown RBP18.6■□□□□ 0.57
PTPRF-209ENST00000438120 PNMA6FA0A0J9YX94 578 aa18.6■□□□□ 0.57
PTPRF-209ENST00000438120 IKBKBO14920 756 aa18.6■□□□□ 0.57
PTPRF-209ENST00000438120 CPP00450 1065 aa18.6■□□□□ 0.57
PTPRF-209ENST00000438120 PSAPP07602 524 aa18.6■□□□□ 0.57
PTPRF-209ENST00000438120 MXI1P50539 228 aa18.6■□□□□ 0.57
PTPRF-209ENST00000438120 ASPHQ12797 758 aa18.6■□□□□ 0.57
PTPRF-209ENST00000438120 BSDC1Q9NW68 430 aaPredicted RBP18.6■□□□□ 0.57
PTPRF-209ENST00000438120 ARAP3Q8WWN8 1544 aa18.6■□□□□ 0.57
PTPRF-209ENST00000438120 KIF3CO14782 793 aa18.6■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms