RNA–Protein interactions for RNA: ENST00000435823.1

COL28A1-203, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL28A1, Length 678 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-203ENST00000435823 CYFIP1Q7L576 1253 aa13.06□□□□□ -0.32
COL28A1-203ENST00000435823 FAM126BQ8IXS8 530 aa13.06□□□□□ -0.32
COL28A1-203ENST00000435823 SLC43A3Q8NBI5 491 aa13.06□□□□□ -0.32
COL28A1-203ENST00000435823 MXRA8Q9BRK3 442 aa13.06□□□□□ -0.32
COL28A1-203ENST00000435823 KATNAL1Q9BW62 490 aa13.06□□□□□ -0.32
COL28A1-203ENST00000435823 TMEM39AQ9NV64 488 aa13.06□□□□□ -0.32
COL28A1-203ENST00000435823 PCDHA4Q9UN74 947 aa13.06□□□□□ -0.32
COL28A1-203ENST00000435823 PPFIA4O75335 1185 aa13.05□□□□□ -0.32
COL28A1-203ENST00000435823 CTDNEP1O95476 244 aa13.05□□□□□ -0.32
COL28A1-203ENST00000435823 C7P10643 843 aa13.05□□□□□ -0.32
COL28A1-203ENST00000435823 MAGEA10P43363 369 aaPredicted RBP13.05□□□□□ -0.32
COL28A1-203ENST00000435823 CHMP4BP1P59074 171 aa13.05□□□□□ -0.32
COL28A1-203ENST00000435823 FAAP100Q0VG06 881 aa13.05□□□□□ -0.32
COL28A1-203ENST00000435823 HSDL1Q3SXM5 330 aa13.05□□□□□ -0.32
COL28A1-203ENST00000435823 FAM47CQ5HY64 1035 aa13.05□□□□□ -0.32
COL28A1-203ENST00000435823 LCE2DQ5TA82 110 aaPredicted RBP13.05□□□□□ -0.32
COL28A1-203ENST00000435823 BLIDQ8IZY5 108 aa13.05□□□□□ -0.32
COL28A1-203ENST00000435823 TBC1D32Q96NH3 1257 aa13.05□□□□□ -0.32
COL28A1-203ENST00000435823 AIFM3Q96NN9 605 aa13.05□□□□□ -0.32
COL28A1-203ENST00000435823 ALG1Q9BT22 464 aa13.05□□□□□ -0.32
COL28A1-203ENST00000435823 SH2B1Q9NRF2 756 aaPredicted RBP13.05□□□□□ -0.32
COL28A1-203ENST00000435823 GRIN2DO15399 1336 aa13.05□□□□□ -0.32
COL28A1-203ENST00000435823 DNAH12Q6ZR08 3092 aa13.04□□□□□ -0.32
COL28A1-203ENST00000435823 SCN10AQ9Y5Y9 1956 aa13.04□□□□□ -0.32
COL28A1-203ENST00000435823 TRIM43BA6NCK2 446 aa13.04□□□□□ -0.32
COL28A1-203ENST00000435823 KIAA0355O15063 1070 aa13.04□□□□□ -0.32
COL28A1-203ENST00000435823 CYP3A4P08684 503 aa13.04□□□□□ -0.32
COL28A1-203ENST00000435823 SUPT20HL2P0C7V6 817 aa13.04□□□□□ -0.32
COL28A1-203ENST00000435823 HOXD8P13378 290 aaPredicted RBP13.04□□□□□ -0.32
COL28A1-203ENST00000435823 RAG1P15918 1043 aa13.04□□□□□ -0.32
COL28A1-203ENST00000435823 KCNA2P16389 499 aa13.04□□□□□ -0.32
COL28A1-203ENST00000435823 PTPN11Q06124 597 aaPredicted RBP13.04□□□□□ -0.32
COL28A1-203ENST00000435823 NBPF20Q3BBV1 942 aa13.04□□□□□ -0.32
COL28A1-203ENST00000435823 NFRKBQ6P4R8 1299 aa13.04□□□□□ -0.32
COL28A1-203ENST00000435823 NIPA1Q7RTP0 329 aa13.04□□□□□ -0.32
COL28A1-203ENST00000435823 SH3RF1Q7Z6J0 888 aa13.04□□□□□ -0.32
COL28A1-203ENST00000435823 DAGLBQ8NCG7 672 aa13.04□□□□□ -0.32
COL28A1-203ENST00000435823 NSUN7Q8NE18 718 aaKnown RBP13.04□□□□□ -0.32
COL28A1-203ENST00000435823 RASGRP4Q8TDF6 673 aa13.04□□□□□ -0.32
COL28A1-203ENST00000435823 SLC39A7Q92504 469 aa13.04□□□□□ -0.32
COL28A1-203ENST00000435823 TRIM43Q96BQ3 446 aaPredicted RBP13.04□□□□□ -0.32
COL28A1-203ENST00000435823 SDF4Q9BRK5 362 aa13.04□□□□□ -0.32
COL28A1-203ENST00000435823 SCUBE2Q9NQ36 999 aa13.04□□□□□ -0.32
COL28A1-203ENST00000435823 KCNH7Q9NS40 1196 aa13.04□□□□□ -0.32
COL28A1-203ENST00000435823 PKD2L1Q9P0L9 805 aa13.04□□□□□ -0.32
COL28A1-203ENST00000435823 COLQQ9Y215 455 aaPredicted RBP13.04□□□□□ -0.32
COL28A1-203ENST00000435823 MEIS1O00470 390 aa13.03□□□□□ -0.32
COL28A1-203ENST00000435823 ADAMTS3O15072 1205 aa13.03□□□□□ -0.32
COL28A1-203ENST00000435823 ATP9AO75110 1047 aa13.03□□□□□ -0.32
COL28A1-203ENST00000435823 F2P00734 622 aa13.03□□□□□ -0.32
COL28A1-203ENST00000435823 CD4P01730 458 aa13.03□□□□□ -0.32
COL28A1-203ENST00000435823 ZNF286BP0CG31 522 aa13.03□□□□□ -0.32
COL28A1-203ENST00000435823 PSEN2P49810 448 aa13.03□□□□□ -0.32
COL28A1-203ENST00000435823 MDM2Q00987 491 aaPredicted RBP13.03□□□□□ -0.32
COL28A1-203ENST00000435823 SETQ01105 290 aaPredicted RBP13.03□□□□□ -0.32
COL28A1-203ENST00000435823 SP4Q02446 784 aa13.03□□□□□ -0.32
COL28A1-203ENST00000435823 TRIM29Q14134 588 aa13.03□□□□□ -0.32
COL28A1-203ENST00000435823 KRT25Q7Z3Z0 450 aa13.03□□□□□ -0.32
COL28A1-203ENST00000435823 PLA2G4DQ86XP0 818 aa13.03□□□□□ -0.32
COL28A1-203ENST00000435823 CCDC83Q8IWF9 413 aa13.03□□□□□ -0.32
COL28A1-203ENST00000435823 C7orf31Q8N865 590 aa13.03□□□□□ -0.32
COL28A1-203ENST00000435823 CYP2W1Q8TAV3 490 aa13.03□□□□□ -0.32
COL28A1-203ENST00000435823 KAT2BQ92831 832 aa13.03□□□□□ -0.32
COL28A1-203ENST00000435823 PHF12Q96QT6 1004 aa13.03□□□□□ -0.32
COL28A1-203ENST00000435823 GPR20Q99678 358 aa13.03□□□□□ -0.32
COL28A1-203ENST00000435823 GDF15Q99988 308 aa13.03□□□□□ -0.32
COL28A1-203ENST00000435823 LLPHQ9BRT6 129 aaKnown RBP13.03□□□□□ -0.32
COL28A1-203ENST00000435823 PHF20Q9BVI0 1012 aa13.03□□□□□ -0.32
COL28A1-203ENST00000435823 BACH2Q9BYV9 841 aa13.03□□□□□ -0.32
COL28A1-203ENST00000435823 UBE2OQ9C0C9 1292 aaKnown RBP13.03□□□□□ -0.32
COL28A1-203ENST00000435823 BRMS1Q9HCU9 246 aa13.03□□□□□ -0.32
COL28A1-203ENST00000435823 KCNJ14Q9UNX9 436 aa13.03□□□□□ -0.32
COL28A1-203ENST00000435823 NOD1Q9Y239 953 aa13.03□□□□□ -0.32
COL28A1-203ENST00000435823 FAM86B1E9PN63 330 aa13.02□□□□□ -0.33
COL28A1-203ENST00000435823 B4GALT4O60513 344 aa13.02□□□□□ -0.33
COL28A1-203ENST00000435823 JAK2O60674 1132 aa13.02□□□□□ -0.33
COL28A1-203ENST00000435823 DTNBO60941 627 aa13.02□□□□□ -0.33
COL28A1-203ENST00000435823 LGALS2P05162 132 aa13.02□□□□□ -0.33
COL28A1-203ENST00000435823 FAM86B2P0C5J1 330 aa13.02□□□□□ -0.33
COL28A1-203ENST00000435823 ARP10275 920 aa13.02□□□□□ -0.33
COL28A1-203ENST00000435823 FDPSP14324 419 aaKnown RBP13.02□□□□□ -0.33
COL28A1-203ENST00000435823 BMP8BP34820 402 aa13.02□□□□□ -0.33
COL28A1-203ENST00000435823 USP11P51784 963 aa13.02□□□□□ -0.33
COL28A1-203ENST00000435823 MFSD10Q14728 455 aa13.02□□□□□ -0.33
COL28A1-203ENST00000435823 NONOQ15233 471 aaKnown RBP eCLIP13.02□□□□□ -0.33
COL28A1-203ENST00000435823 KIAA0753Q2KHM9 967 aa13.02□□□□□ -0.33
COL28A1-203ENST00000435823 CRYGNQ8WXF5 182 aa13.02□□□□□ -0.33
COL28A1-203ENST00000435823 SEPT1Q8WYJ6 367 aa13.02□□□□□ -0.33
COL28A1-203ENST00000435823 BADQ92934 168 aa13.02□□□□□ -0.33
COL28A1-203ENST00000435823 TRPV6Q9H1D0 765 aa13.02□□□□□ -0.33
COL28A1-203ENST00000435823 BCAS3Q9H6U6 928 aa13.02□□□□□ -0.33
COL28A1-203ENST00000435823 AGO4Q9HCK5 861 aaKnown RBP13.02□□□□□ -0.33
COL28A1-203ENST00000435823 JPH1Q9HDC5 661 aaPredicted RBP13.02□□□□□ -0.33
COL28A1-203ENST00000435823 TBX21Q9UL17 535 aa13.02□□□□□ -0.33
COL28A1-203ENST00000435823 ZNF215Q9UL58 517 aaPredicted RBP13.02□□□□□ -0.33
COL28A1-203ENST00000435823 NFASCO94856 1347 aa13.02□□□□□ -0.33
COL28A1-203ENST00000435823 LTBP2Q14767 1821 aa13.02□□□□□ -0.33
COL28A1-203ENST00000435823 DOCK5Q9H7D0 1870 aa13.02□□□□□ -0.33
COL28A1-203ENST00000435823 CCDC194A0A1B0GVG4 234 aa13.01□□□□□ -0.33
COL28A1-203ENST00000435823 M0R2N6 131 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms