RNA–Protein interactions for RNA: ENST00000435425.1

SHH-203, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 807 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-203ENST00000435425 MAFGO15525 162 aa21.24■□□□□ 0.99
SHH-203ENST00000435425 CYP3A4P08684 503 aa21.24■□□□□ 0.99
SHH-203ENST00000435425 FAM86B2P0C5J1 330 aa21.24■□□□□ 0.99
SHH-203ENST00000435425 TRIM29Q14134 588 aa21.24■□□□□ 0.99
SHH-203ENST00000435425 ANKRD33Q7Z3H0 272 aa21.24■□□□□ 0.99
SHH-203ENST00000435425 FAM177A1Q8N128 213 aaPredicted RBP21.24■□□□□ 0.99
SHH-203ENST00000435425 OXER1Q8TDS5 423 aa21.24■□□□□ 0.99
SHH-203ENST00000435425 TBCKQ8TEA7 893 aa21.24■□□□□ 0.99
SHH-203ENST00000435425 CRYGNQ8WXF5 182 aa21.24■□□□□ 0.99
SHH-203ENST00000435425 LLPHQ9BRT6 129 aaKnown RBP21.24■□□□□ 0.99
SHH-203ENST00000435425 PDLIM7Q9NR12 457 aa21.24■□□□□ 0.99
SHH-203ENST00000435425 TMEM39AQ9NV64 488 aa21.24■□□□□ 0.99
SHH-203ENST00000435425 SCN10AQ9Y5Y9 1956 aa21.24■□□□□ 0.99
SHH-203ENST00000435425 M0R2N6 131 aa21.23■□□□□ 0.99
SHH-203ENST00000435425 MEIS1O00470 390 aa21.23■□□□□ 0.99
SHH-203ENST00000435425 PPFIA4O75335 1185 aa21.23■□□□□ 0.99
SHH-203ENST00000435425 FAAP100Q0VG06 881 aa21.23■□□□□ 0.99
SHH-203ENST00000435425 UTP14CQ5TAP6 766 aaKnown RBP21.23■□□□□ 0.99
SHH-203ENST00000435425 FAM126BQ8IXS8 530 aa21.23■□□□□ 0.99
SHH-203ENST00000435425 SLC43A3Q8NBI5 491 aa21.23■□□□□ 0.99
SHH-203ENST00000435425 KAT2BQ92831 832 aa21.23■□□□□ 0.99
SHH-203ENST00000435425 TOX2Q96NM4 488 aa21.23■□□□□ 0.99
SHH-203ENST00000435425 GPR20Q99678 358 aa21.23■□□□□ 0.99
SHH-203ENST00000435425 AGO4Q9HCK5 861 aaKnown RBP21.23■□□□□ 0.99
SHH-203ENST00000435425 DNAH12Q6ZR08 3092 aa21.23■□□□□ 0.99
SHH-203ENST00000435425 CCDC194A0A1B0GVG4 234 aa21.22■□□□□ 0.99
SHH-203ENST00000435425 TRIM43BA6NCK2 446 aa21.22■□□□□ 0.99
SHH-203ENST00000435425 PSEN2P49810 448 aa21.22■□□□□ 0.99
SHH-203ENST00000435425 MDM2Q00987 491 aaPredicted RBP21.22■□□□□ 0.99
SHH-203ENST00000435425 GUCY1B3Q02153 619 aa21.22■□□□□ 0.99
SHH-203ENST00000435425 NONOQ15233 471 aaKnown RBP eCLIP21.22■□□□□ 0.99
SHH-203ENST00000435425 PRR16Q569H4 304 aa21.22■□□□□ 0.99
SHH-203ENST00000435425 CHRDL2Q6WN34 429 aa21.22■□□□□ 0.99
SHH-203ENST00000435425 KRT25Q7Z3Z0 450 aa21.22■□□□□ 0.99
SHH-203ENST00000435425 FAM184AQ8NB25 1140 aa21.22■□□□□ 0.99
SHH-203ENST00000435425 TRIM43Q96BQ3 446 aaPredicted RBP21.22■□□□□ 0.99
SHH-203ENST00000435425 TMX3Q96JJ7 454 aa21.22■□□□□ 0.99
SHH-203ENST00000435425 SDF4Q9BRK5 362 aa21.22■□□□□ 0.99
SHH-203ENST00000435425 TRPV6Q9H1D0 765 aa21.22■□□□□ 0.99
SHH-203ENST00000435425 IGLV3-22A0A075B6J6 115 aa21.21■□□□□ 0.99
SHH-203ENST00000435425 DDX39AO00148 427 aaKnown RBP21.21■□□□□ 0.99
SHH-203ENST00000435425 KRT2P35908 639 aa21.21■□□□□ 0.99
SHH-203ENST00000435425 MFSD10Q14728 455 aa21.21■□□□□ 0.99
SHH-203ENST00000435425 INF2Q27J81 1249 aa21.21■□□□□ 0.99
SHH-203ENST00000435425 KRT40Q6A162 431 aa21.21■□□□□ 0.99
SHH-203ENST00000435425 NIPA1Q7RTP0 329 aa21.21■□□□□ 0.99
SHH-203ENST00000435425 IL27Q8NEV9 243 aa21.21■□□□□ 0.99
SHH-203ENST00000435425 LBHD1Q9BQE6 289 aaPredicted RBP21.21■□□□□ 0.99
SHH-203ENST00000435425 BRMS1Q9HCU9 246 aa21.21■□□□□ 0.99
SHH-203ENST00000435425 EDIL3O43854 480 aa21.2■□□□□ 0.98
SHH-203ENST00000435425 B4GALT4O60513 344 aa21.2■□□□□ 0.98
SHH-203ENST00000435425 LGALS2P05162 132 aa21.2■□□□□ 0.98
SHH-203ENST00000435425 MAGEA10P43363 369 aaPredicted RBP21.2■□□□□ 0.98
SHH-203ENST00000435425 MCM2P49736 904 aa21.2■□□□□ 0.98
SHH-203ENST00000435425 USP11P51784 963 aa21.2■□□□□ 0.98
SHH-203ENST00000435425 HMGN5P82970 282 aaKnown RBP21.2■□□□□ 0.98
SHH-203ENST00000435425 NR5A1Q13285 461 aa21.2■□□□□ 0.98
SHH-203ENST00000435425 ITGB3BPQ13352 177 aaPredicted RBP21.2■□□□□ 0.98
SHH-203ENST00000435425 KIAA0753Q2KHM9 967 aa21.2■□□□□ 0.98
SHH-203ENST00000435425 PIK3AP1Q6ZUJ8 805 aa21.2■□□□□ 0.98
SHH-203ENST00000435425 ZNF577Q9BSK1 485 aa21.2■□□□□ 0.98
SHH-203ENST00000435425 C16orf70Q9BSU1 422 aa21.2■□□□□ 0.98
SHH-203ENST00000435425 KATNAL1Q9BW62 490 aa21.2■□□□□ 0.98
SHH-203ENST00000435425 SEZ6LQ9BYH1 1024 aa21.2■□□□□ 0.98
SHH-203ENST00000435425 JPH1Q9HDC5 661 aaPredicted RBP21.2■□□□□ 0.98
SHH-203ENST00000435425 TRMT13Q9NUP7 481 aaKnown RBP21.2■□□□□ 0.98
SHH-203ENST00000435425 SLC9A2Q9UBY0 812 aa21.2■□□□□ 0.98
SHH-203ENST00000435425 LTBP2Q14767 1821 aa21.2■□□□□ 0.98
SHH-203ENST00000435425 GSTTP1A0A1W2PQM5 241 aa21.19■□□□□ 0.98
SHH-203ENST00000435425 F2P00734 622 aa21.19■□□□□ 0.98
SHH-203ENST00000435425 CD4P01730 458 aa21.19■□□□□ 0.98
SHH-203ENST00000435425 MMP1P03956 469 aa21.19■□□□□ 0.98
SHH-203ENST00000435425 HOXD8P13378 290 aaPredicted RBP21.19■□□□□ 0.98
SHH-203ENST00000435425 RAG1P15918 1043 aa21.19■□□□□ 0.98
SHH-203ENST00000435425 CIITAP33076 1130 aa21.19■□□□□ 0.98
SHH-203ENST00000435425 TCF7P36402 384 aaPredicted RBP21.19■□□□□ 0.98
SHH-203ENST00000435425 NFRKBQ6P4R8 1299 aa21.19■□□□□ 0.98
SHH-203ENST00000435425 TRIM50Q86XT4 487 aa21.19■□□□□ 0.98
SHH-203ENST00000435425 C7orf31Q8N865 590 aa21.19■□□□□ 0.98
SHH-203ENST00000435425 SEPT1Q8WYJ6 367 aa21.19■□□□□ 0.98
SHH-203ENST00000435425 C8orf76Q96K31 380 aa21.19■□□□□ 0.98
SHH-203ENST00000435425 COLQQ9Y215 455 aaPredicted RBP21.19■□□□□ 0.98
SHH-203ENST00000435425 BTBD18B2RXH4 712 aa21.18■□□□□ 0.98
SHH-203ENST00000435425 H3BRB1 525 aa21.18■□□□□ 0.98
SHH-203ENST00000435425 IPO5O00410 1097 aaKnown RBP21.18■□□□□ 0.98
SHH-203ENST00000435425 TDP2O95551 362 aa21.18■□□□□ 0.98
SHH-203ENST00000435425 SETQ01105 290 aaPredicted RBP21.18■□□□□ 0.98
SHH-203ENST00000435425 LETM2Q2VYF4 491 aa21.18■□□□□ 0.98
SHH-203ENST00000435425 DIS3L2Q8IYB7 885 aaKnown RBP21.18■□□□□ 0.98
SHH-203ENST00000435425 BADQ92934 168 aa21.18■□□□□ 0.98
SHH-203ENST00000435425 PPP1R12CQ9BZL4 782 aa21.18■□□□□ 0.98
SHH-203ENST00000435425 TUT1Q9H6E5 874 aaKnown RBP21.18■□□□□ 0.98
SHH-203ENST00000435425 HDAC6Q9UBN7 1215 aa21.18■□□□□ 0.98
SHH-203ENST00000435425 NFASCO94856 1347 aa21.18■□□□□ 0.98
SHH-203ENST00000435425 FAM205CA6NFA0 338 aa21.17■□□□□ 0.98
SHH-203ENST00000435425 HAS3O00219 553 aa21.17■□□□□ 0.98
SHH-203ENST00000435425 KIAA0355O15063 1070 aa21.17■□□□□ 0.98
SHH-203ENST00000435425 CYP2C9P11712 490 aa21.17■□□□□ 0.98
SHH-203ENST00000435425 ITGB8P26012 769 aa21.17■□□□□ 0.98
SHH-203ENST00000435425 PTPN11Q06124 597 aaPredicted RBP21.17■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms