RNA–Protein interactions for RNA: ENST00000435201.5

LIMK1-203, Transcript of LIM domain kinase 1, humanhuman

TSL 1 (best)

Gene LIMK1, Length 1,883 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1-203ENST00000435201 RANBP17Q9H2T7 1088 aaKnown RBP18.54■□□□□ 0.56
LIMK1-203ENST00000435201 VEZTQ9HBM0 779 aa18.54■□□□□ 0.56
LIMK1-203ENST00000435201 DNM3Q9UQ16 869 aa18.54■□□□□ 0.56
LIMK1-203ENST00000435201 SIK3Q9Y2K2 1263 aa18.54■□□□□ 0.56
LIMK1-203ENST00000435201 COL4A3BPQ9Y5P4 624 aa18.54■□□□□ 0.56
LIMK1-203ENST00000435201 KCNA3P22001 575 aa18.54■□□□□ 0.56
LIMK1-203ENST00000435201 HOXA13P31271 388 aaPredicted RBP18.54■□□□□ 0.56
LIMK1-203ENST00000435201 KIF4BQ2VIQ3 1234 aa18.54■□□□□ 0.56
LIMK1-203ENST00000435201 HERC4Q5GLZ8 1057 aaPredicted RBP18.54■□□□□ 0.56
LIMK1-203ENST00000435201 RSRC2Q7L4I2 434 aaKnown RBP18.54■□□□□ 0.56
LIMK1-203ENST00000435201 FAM160B2Q86V87 743 aa18.54■□□□□ 0.56
LIMK1-203ENST00000435201 CEP112Q8N8E3 955 aa18.54■□□□□ 0.56
LIMK1-203ENST00000435201 GOLGA1Q92805 767 aa18.54■□□□□ 0.56
LIMK1-203ENST00000435201 UIMC1Q96RL1 719 aa18.54■□□□□ 0.56
LIMK1-203ENST00000435201 VCPKMTQ9H867 229 aa18.54■□□□□ 0.56
LIMK1-203ENST00000435201 EHMT1Q9H9B1 1298 aa18.54■□□□□ 0.56
LIMK1-203ENST00000435201 VAV3Q9UKW4 847 aa18.54■□□□□ 0.56
LIMK1-203ENST00000435201 ZBTB12Q9Y330 459 aaPredicted RBP18.54■□□□□ 0.56
LIMK1-203ENST00000435201 EIF3CLB5ME19 914 aaKnown RBP18.53■□□□□ 0.56
LIMK1-203ENST00000435201 HNRNPH3P31942 346 aaKnown RBP18.53■□□□□ 0.56
LIMK1-203ENST00000435201 KIAA1755Q5JYT7 1200 aa18.53■□□□□ 0.56
LIMK1-203ENST00000435201 PPP4R3CPQ6ZMV5 832 aa18.53■□□□□ 0.56
LIMK1-203ENST00000435201 GPR161Q8N6U8 529 aaKnown RBP18.53■□□□□ 0.56
LIMK1-203ENST00000435201 SYT2Q8N9I0 419 aaPredicted RBP18.53■□□□□ 0.56
LIMK1-203ENST00000435201 EHBP1Q8NDI1 1231 aa18.53■□□□□ 0.56
LIMK1-203ENST00000435201 SLC16A10Q8TF71 515 aa18.53■□□□□ 0.56
LIMK1-203ENST00000435201 EIF3CQ99613 913 aaKnown RBP18.53■□□□□ 0.56
LIMK1-203ENST00000435201 POLR3CQ9BUI4 534 aaPredicted RBP18.53■□□□□ 0.56
LIMK1-203ENST00000435201 NHEJ1Q9H9Q4 299 aaPredicted RBP18.53■□□□□ 0.56
LIMK1-203ENST00000435201 GCOM1H8Y6P7 765 aaPredicted RBP18.52■□□□□ 0.56
LIMK1-203ENST00000435201 TRAF5O00463 557 aa18.52■□□□□ 0.56
LIMK1-203ENST00000435201 POLR2MP0CAP2 368 aa18.52■□□□□ 0.56
LIMK1-203ENST00000435201 SPATA31C1P0DKV0 1188 aa18.52■□□□□ 0.56
LIMK1-203ENST00000435201 TUBB4BP68371 445 aa18.52■□□□□ 0.56
LIMK1-203ENST00000435201 ARHGAP27Q6ZUM4 889 aa18.52■□□□□ 0.56
LIMK1-203ENST00000435201 SRGAP1Q7Z6B7 1085 aa18.52■□□□□ 0.56
LIMK1-203ENST00000435201 RABGGTAQ92696 567 aa18.52■□□□□ 0.56
LIMK1-203ENST00000435201 EDEM3Q9BZQ6 932 aa18.52■□□□□ 0.56
LIMK1-203ENST00000435201 PDGFDQ9GZP0 370 aaPredicted RBP18.52■□□□□ 0.56
LIMK1-203ENST00000435201 EMILIN3Q9NT22 766 aa18.52■□□□□ 0.56
LIMK1-203ENST00000435201 MRPL11Q9Y3B7 192 aaKnown RBP18.52■□□□□ 0.56
LIMK1-203ENST00000435201 NKRFO15226 690 aaKnown RBP eCLIP18.52■□□□□ 0.55
LIMK1-203ENST00000435201 TAL1P17542 331 aaPredicted RBP18.52■□□□□ 0.55
LIMK1-203ENST00000435201 MARSP56192 900 aaKnown RBP18.52■□□□□ 0.55
LIMK1-203ENST00000435201 HERVK_113P62684 666 aa18.52■□□□□ 0.55
LIMK1-203ENST00000435201 CCDC40Q4G0X9 1142 aa18.52■□□□□ 0.55
LIMK1-203ENST00000435201 ARSHQ5FYA8 562 aa18.52■□□□□ 0.55
LIMK1-203ENST00000435201 RGS17Q9UGC6 210 aaPredicted RBP18.52■□□□□ 0.55
LIMK1-203ENST00000435201 PLAGL2Q9UPG8 496 aa18.52■□□□□ 0.55
LIMK1-203ENST00000435201 IGLV3-22A0A075B6J6 115 aa18.51■□□□□ 0.55
LIMK1-203ENST00000435201 NPHP3-ACAD11A0A0J9YXS1 232 aa18.51■□□□□ 0.55
LIMK1-203ENST00000435201 CAP2P40123 477 aa18.51■□□□□ 0.55
LIMK1-203ENST00000435201 BAG6P46379 1132 aa18.51■□□□□ 0.55
LIMK1-203ENST00000435201 EDRF1Q3B7T1 1238 aa18.51■□□□□ 0.55
LIMK1-203ENST00000435201 POTEAQ6S8J7 498 aa18.51■□□□□ 0.55
LIMK1-203ENST00000435201 KIAA1328Q86T90 577 aa18.51■□□□□ 0.55
LIMK1-203ENST00000435201 ZC3H3Q8IXZ2 948 aaKnown RBP18.51■□□□□ 0.55
LIMK1-203ENST00000435201 SCFD1Q8WVM8 642 aa18.51■□□□□ 0.55
LIMK1-203ENST00000435201 TMEM39BQ9GZU3 492 aa18.51■□□□□ 0.55
LIMK1-203ENST00000435201 TBC1D7Q9P0N9 293 aa18.51■□□□□ 0.55
LIMK1-203ENST00000435201 FEM1BQ9UK73 627 aa18.51■□□□□ 0.55
LIMK1-203ENST00000435201 SPDYE4A6NLX3 237 aa18.5■□□□□ 0.55
LIMK1-203ENST00000435201 KRT86O43790 486 aa18.5■□□□□ 0.55
LIMK1-203ENST00000435201 ABL1P00519 1130 aa18.5■□□□□ 0.55
LIMK1-203ENST00000435201 CFBP00751 764 aa18.5■□□□□ 0.55
LIMK1-203ENST00000435201 CLCN6P51797 869 aa18.5■□□□□ 0.55
LIMK1-203ENST00000435201 CBX1P83916 185 aa18.5■□□□□ 0.55
LIMK1-203ENST00000435201 GIT2Q14161 759 aa18.5■□□□□ 0.55
LIMK1-203ENST00000435201 WHAMMP3Q1A5X7 153 aa18.5■□□□□ 0.55
LIMK1-203ENST00000435201 TEX35Q5T0J7 233 aa18.5■□□□□ 0.55
LIMK1-203ENST00000435201 CCDC174Q6PII3 467 aa18.5■□□□□ 0.55
LIMK1-203ENST00000435201 ZBED3Q96IU2 234 aaPredicted RBP18.5■□□□□ 0.55
LIMK1-203ENST00000435201 FGFBP2Q9BYJ0 223 aa18.5■□□□□ 0.55
LIMK1-203ENST00000435201 TANGO6Q9C0B7 1094 aa18.5■□□□□ 0.55
LIMK1-203ENST00000435201 KCTD10Q9H3F6 313 aa18.5■□□□□ 0.55
LIMK1-203ENST00000435201 MMRN2Q9H8L6 949 aa18.5■□□□□ 0.55
LIMK1-203ENST00000435201 GUCA1BQ9UMX6 200 aa18.5■□□□□ 0.55
LIMK1-203ENST00000435201 ASNSP08243 561 aa18.5■□□□□ 0.55
LIMK1-203ENST00000435201 CHMP4BP1P59074 171 aa18.5■□□□□ 0.55
LIMK1-203ENST00000435201 CACNB1Q02641 598 aaPredicted RBP18.5■□□□□ 0.55
LIMK1-203ENST00000435201 MAP3K10Q02779 954 aa18.5■□□□□ 0.55
LIMK1-203ENST00000435201 PABPC4Q13310 644 aaKnown RBP eCLIP18.5■□□□□ 0.55
LIMK1-203ENST00000435201 SF3B2Q13435 895 aaKnown RBP18.5■□□□□ 0.55
LIMK1-203ENST00000435201 CCDC122Q5T0U0 273 aa18.5■□□□□ 0.55
LIMK1-203ENST00000435201 NEK11Q8NG66 645 aa18.5■□□□□ 0.55
LIMK1-203ENST00000435201 JAKMIP2Q96AA8 810 aa18.5■□□□□ 0.55
LIMK1-203ENST00000435201 CCDC42Q96M95 316 aa18.5■□□□□ 0.55
LIMK1-203ENST00000435201 FAM207AQ9NSI2 230 aaPredicted RBP18.5■□□□□ 0.55
LIMK1-203ENST00000435201 ATAD5Q96QE3 1844 aa18.49■□□□□ 0.55
LIMK1-203ENST00000435201 EYA4O95677 639 aa18.49■□□□□ 0.55
LIMK1-203ENST00000435201 PSMC6P62333 389 aa18.49■□□□□ 0.55
LIMK1-203ENST00000435201 NELFCDQ8IXH7 590 aa18.49■□□□□ 0.55
LIMK1-203ENST00000435201 CYP2W1Q8TAV3 490 aa18.49■□□□□ 0.55
LIMK1-203ENST00000435201 EIF2AK1Q9BQI3 630 aaKnown RBP18.49■□□□□ 0.55
LIMK1-203ENST00000435201 TSGA10Q9BZW7 698 aa18.49■□□□□ 0.55
LIMK1-203ENST00000435201 ZHX3Q9H4I2 956 aa18.49■□□□□ 0.55
LIMK1-203ENST00000435201 TUFT1Q9NNX1 390 aa18.49■□□□□ 0.55
LIMK1-203ENST00000435201 FAM184BQ9ULE4 1060 aa18.49■□□□□ 0.55
LIMK1-203ENST00000435201 SMCHD1A6NHR9 2005 aa18.49■□□□□ 0.55
LIMK1-203ENST00000435201 MEIS1O00470 390 aa18.48■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms