RNA–Protein interactions for RNA: ENST00000425280.1

LDB1-202, Transcript of LIM domain binding 1, humanhuman

TSL 5 BASIC

Gene LDB1, Length 2,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB1-202ENST00000425280 ZNF214Q9UL59 606 aaPredicted RBP29.57■■■□□ 2.32
LDB1-202ENST00000425280 CYP11B2P19099 503 aa29.56■■■□□ 2.32
LDB1-202ENST00000425280 CYP4A11Q02928 519 aa29.56■■■□□ 2.32
LDB1-202ENST00000425280 SPAG1Q07617 926 aa29.56■■■□□ 2.32
LDB1-202ENST00000425280 SNRNP48Q6IEG0 339 aaKnown RBP29.56■■■□□ 2.32
LDB1-202ENST00000425280 CNKSR2Q8WXI2 1034 aa29.56■■■□□ 2.32
LDB1-202ENST00000425280 DNM3Q9UQ16 869 aa29.56■■■□□ 2.32
LDB1-202ENST00000425280 PTPRFP10586 1907 aa29.56■■■□□ 2.32
LDB1-202ENST00000425280 BCRP11274 1271 aa29.56■■■□□ 2.32
LDB1-202ENST00000425280 IREB2P48200 963 aaKnown RBP29.56■■■□□ 2.32
LDB1-202ENST00000425280 PSMD2Q13200 908 aa29.56■■■□□ 2.32
LDB1-202ENST00000425280 TMEM132BQ14DG7 1078 aa29.56■■■□□ 2.32
LDB1-202ENST00000425280 KRT31Q15323 416 aa29.56■■■□□ 2.32
LDB1-202ENST00000425280 TCP11X2Q5H9J9 407 aa29.56■■■□□ 2.32
LDB1-202ENST00000425280 NSMFQ6X4W1 530 aa29.56■■■□□ 2.32
LDB1-202ENST00000425280 NIPA1Q7RTP0 329 aa29.56■■■□□ 2.32
LDB1-202ENST00000425280 IRF2BP1Q8IU81 584 aa29.56■■■□□ 2.32
LDB1-202ENST00000425280 TRIM47Q96LD4 638 aa29.56■■■□□ 2.32
LDB1-202ENST00000425280 DUSP9Q99956 384 aaKnown RBP29.56■■■□□ 2.32
LDB1-202ENST00000425280 RGL1Q9NZL6 768 aa29.56■■■□□ 2.32
LDB1-202ENST00000425280 LRRC10BA6NIK2 292 aa29.55■■■□□ 2.32
LDB1-202ENST00000425280 KCNJ18B7U540 433 aa29.55■■■□□ 2.32
LDB1-202ENST00000425280 COASYQ13057 564 aa29.55■■■□□ 2.32
LDB1-202ENST00000425280 KCNJ12Q14500 433 aa29.55■■■□□ 2.32
LDB1-202ENST00000425280 ZC3H15Q8WU90 426 aaKnown RBP29.55■■■□□ 2.32
LDB1-202ENST00000425280 CDCA5Q96FF9 252 aa29.55■■■□□ 2.32
LDB1-202ENST00000425280 HSD17B14Q9BPX1 270 aa29.55■■■□□ 2.32
LDB1-202ENST00000425280 PANK4Q9NVE7 773 aa29.55■■■□□ 2.32
LDB1-202ENST00000425280 UBIAD1Q9Y5Z9 338 aa29.55■■■□□ 2.32
LDB1-202ENST00000425280 SRCAPQ6ZRS2 3230 aa29.55■■■□□ 2.32
LDB1-202ENST00000425280 BICDL2A1A5D9 508 aa29.54■■■□□ 2.32
LDB1-202ENST00000425280 IPO5O00410 1097 aaKnown RBP29.54■■■□□ 2.32
LDB1-202ENST00000425280 ATP2A1O14983 1001 aa29.54■■■□□ 2.32
LDB1-202ENST00000425280 TEX33O43247 280 aa29.54■■■□□ 2.32
LDB1-202ENST00000425280 CHMP2AO43633 222 aa29.54■■■□□ 2.32
LDB1-202ENST00000425280 SKILP12757 684 aa29.54■■■□□ 2.32
LDB1-202ENST00000425280 SFPQP23246 707 aaKnown RBP eCLIP29.54■■■□□ 2.32
LDB1-202ENST00000425280 MRPS9P82933 396 aaKnown RBP29.54■■■□□ 2.32
LDB1-202ENST00000425280 TBX2Q13207 712 aaPredicted RBP29.54■■■□□ 2.32
LDB1-202ENST00000425280 ARSHQ5FYA8 562 aa29.54■■■□□ 2.32
LDB1-202ENST00000425280 HOXC10Q9NYD6 342 aa29.54■■■□□ 2.32
LDB1-202ENST00000425280 MYPNQ86TC9 1320 aa29.54■■■□□ 2.32
LDB1-202ENST00000425280 NPHP3-ACAD11A0A0J9YXS1 232 aa29.54■■■□□ 2.32
LDB1-202ENST00000425280 SPDYE16A6NNV3 312 aaPredicted RBP29.54■■■□□ 2.32
LDB1-202ENST00000425280 HOXA7P31268 230 aaPredicted RBP29.54■■■□□ 2.32
LDB1-202ENST00000425280 SPECC1LQ69YQ0 1117 aa29.54■■■□□ 2.32
LDB1-202ENST00000425280 ANKRD40Q6AI12 368 aa29.54■■■□□ 2.32
LDB1-202ENST00000425280 SYT2Q8N9I0 419 aaPredicted RBP29.54■■■□□ 2.32
LDB1-202ENST00000425280 WDR11Q9BZH6 1224 aa29.54■■■□□ 2.32
LDB1-202ENST00000425280 THAP9Q9H5L6 903 aa29.54■■■□□ 2.32
LDB1-202ENST00000425280 EIF2AK2P19525 551 aaKnown RBP29.53■■■□□ 2.32
LDB1-202ENST00000425280 PABPC4Q13310 644 aaKnown RBP eCLIP29.53■■■□□ 2.327e-6■□□□□ 8
LDB1-202ENST00000425280 PGM5Q15124 567 aa29.53■■■□□ 2.32
LDB1-202ENST00000425280 GPR162Q16538 588 aa29.53■■■□□ 2.32
LDB1-202ENST00000425280 TKFCQ3LXA3 575 aa29.53■■■□□ 2.32
LDB1-202ENST00000425280 FILIP1LQ4L180 1135 aa29.53■■■□□ 2.32
LDB1-202ENST00000425280 B3GNT9Q6UX72 402 aa29.53■■■□□ 2.32
LDB1-202ENST00000425280 RIT2Q99578 217 aa29.53■■■□□ 2.32
LDB1-202ENST00000425280 TEKT3Q9BXF9 490 aa29.53■■■□□ 2.32
LDB1-202ENST00000425280 SRRTQ9BXP5 876 aaKnown RBP29.53■■■□□ 2.32
LDB1-202ENST00000425280 UNC45AQ9H3U1 944 aa29.53■■■□□ 2.32
LDB1-202ENST00000425280 TUFT1Q9NNX1 390 aa29.53■■■□□ 2.32
LDB1-202ENST00000425280 KCNH7Q9NS40 1196 aa29.53■■■□□ 2.32
LDB1-202ENST00000425280 BAATQ14032 418 aaPredicted RBP29.52■■■□□ 2.32
LDB1-202ENST00000425280 GUF1Q8N442 669 aaKnown RBP29.52■■■□□ 2.32
LDB1-202ENST00000425280 SEMA6BQ9H3T3 888 aa29.52■■■□□ 2.32
LDB1-202ENST00000425280 PXMP2Q9NR77 195 aa29.52■■■□□ 2.32
LDB1-202ENST00000425280 OFD1O75665 1012 aa29.52■■■□□ 2.32
LDB1-202ENST00000425280 SLITRK3O94933 977 aa29.52■■■□□ 2.32
LDB1-202ENST00000425280 TREML2Q5T2D2 321 aa29.52■■■□□ 2.32
LDB1-202ENST00000425280 KCTD17Q8N5Z5 321 aa29.52■■■□□ 2.32
LDB1-202ENST00000425280 ANKRD20A12PQ8NF67 263 aa29.52■■■□□ 2.32
LDB1-202ENST00000425280 NOC3LQ8WTT2 800 aaKnown RBP29.52■■■□□ 2.32
LDB1-202ENST00000425280 DYDC2Q96IM9 177 aa29.52■■■□□ 2.32
LDB1-202ENST00000425280 PURBQ96QR8 312 aaKnown RBP29.52■■■□□ 2.32
LDB1-202ENST00000425280 RMDN3Q96TC7 470 aa29.52■■■□□ 2.32
LDB1-202ENST00000425280 GLTPD2A6NH11 291 aa29.51■■■□□ 2.31
LDB1-202ENST00000425280 PBX1P40424 430 aa29.51■■■□□ 2.31
LDB1-202ENST00000425280 COPB1P53618 953 aaKnown RBP29.51■■■□□ 2.31
LDB1-202ENST00000425280 CTTNQ14247 550 aaKnown RBP29.51■■■□□ 2.31
LDB1-202ENST00000425280 CENPPQ6IPU0 288 aa29.51■■■□□ 2.31
LDB1-202ENST00000425280 CCDC65Q8IXS2 484 aa29.51■■■□□ 2.31
LDB1-202ENST00000425280 CSGALNACT2Q8N6G5 542 aa29.51■■■□□ 2.31
LDB1-202ENST00000425280 TEX13BQ9BXU2 312 aa29.51■■■□□ 2.31
LDB1-202ENST00000425280 ELP3Q9H9T3 547 aa29.51■■■□□ 2.31
LDB1-202ENST00000425280 JADE2Q9NQC1 790 aa29.51■■■□□ 2.31
LDB1-202ENST00000425280 PDCD2LQ9BRP1 358 aa29.51■■■□□ 2.31
LDB1-202ENST00000425280 TAB2Q9NYJ8 693 aa29.51■■■□□ 2.31
LDB1-202ENST00000425280 NF2P35240 595 aa29.5■■■□□ 2.31
LDB1-202ENST00000425280 CACNB1Q02641 598 aaPredicted RBP29.5■■■□□ 2.31
LDB1-202ENST00000425280 GLIS3Q8NEA6 775 aa29.5■■■□□ 2.31
LDB1-202ENST00000425280 CLMNQ96JQ2 1002 aa29.5■■■□□ 2.31
LDB1-202ENST00000425280 ZC3H4Q9UPT8 1303 aaKnown RBP29.5■■■□□ 2.31
LDB1-202ENST00000425280 FRMD3A2A2Y4 597 aa29.49■■■□□ 2.31
LDB1-202ENST00000425280 EYA4O95677 639 aa29.49■■■□□ 2.31
LDB1-202ENST00000425280 KRT18P05783 430 aaKnown RBP29.49■■■□□ 2.31
LDB1-202ENST00000425280 EEF1GP26641 437 aaKnown RBP29.49■■■□□ 2.31
LDB1-202ENST00000425280 RAD51AP2Q09MP3 1159 aa29.49■■■□□ 2.31
LDB1-202ENST00000425280 FAM26FQ5R3K3 315 aa29.49■■■□□ 2.31
LDB1-202ENST00000425280 MOB2Q70IA6 237 aa29.49■■■□□ 2.31
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms