RNA–Protein interactions for RNA: ENST00000423061.5

SYNE1-212, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNE1, Length 27,436 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-212ENST00000423061 SMYD3Q9H7B4 428 aa3.7□□□□□ -1.82
SYNE1-212ENST00000423061 KCNH3Q9ULD8 1083 aa3.7□□□□□ -1.82
SYNE1-212ENST00000423061 PRC1O43663 620 aa3.7□□□□□ -1.82
SYNE1-212ENST00000423061 HDAC2Q92769 488 aaKnown RBP3.7□□□□□ -1.82
SYNE1-212ENST00000423061 TBC1D23Q9NUY8 699 aa3.7□□□□□ -1.82
SYNE1-212ENST00000423061 TRNAU1APQ9NX07 287 aaKnown RBP3.7□□□□□ -1.82
SYNE1-212ENST00000423061 TFR2Q9UP52 801 aa3.7□□□□□ -1.82
SYNE1-212ENST00000423061 SEC23IPQ9Y6Y8 1000 aaKnown RBP3.7□□□□□ -1.82
SYNE1-212ENST00000423061 CDC42BPAQ5VT25 1732 aa3.7□□□□□ -1.82
SYNE1-212ENST00000423061 PPP2R2AP63151 447 aa3.7□□□□□ -1.82
SYNE1-212ENST00000423061 ZCWPW2Q504Y3 356 aa3.7□□□□□ -1.82
SYNE1-212ENST00000423061 C6orf118Q5T5N4 469 aa3.7□□□□□ -1.82
SYNE1-212ENST00000423061 C11orf74Q86VG3 221 aa3.7□□□□□ -1.82
SYNE1-212ENST00000423061 CALML6Q8TD86 181 aa3.7□□□□□ -1.82
SYNE1-212ENST00000423061 EHD2Q9NZN4 543 aa3.7□□□□□ -1.82
SYNE1-212ENST00000423061 CNKSR1Q969H4 720 aa3.7□□□□□ -1.82
SYNE1-212ENST00000423061 TRPM2O94759 1503 aa3.7□□□□□ -1.82
SYNE1-212ENST00000423061 MZF1P28698 734 aaPredicted RBP3.7□□□□□ -1.82
SYNE1-212ENST00000423061 TKTP29401 623 aaKnown RBP3.7□□□□□ -1.82
SYNE1-212ENST00000423061 TUBA1BP68363 451 aa3.7□□□□□ -1.82
SYNE1-212ENST00000423061 PPARAQ07869 468 aa3.7□□□□□ -1.82
SYNE1-212ENST00000423061 TUBA1AQ71U36 451 aa3.7□□□□□ -1.82
SYNE1-212ENST00000423061 MEIS3Q99687 375 aa3.7□□□□□ -1.82
SYNE1-212ENST00000423061 RGS12O14924 1447 aa3.7□□□□□ -1.82
SYNE1-212ENST00000423061 IKQ13123 557 aaPredicted RBP3.7□□□□□ -1.82
SYNE1-212ENST00000423061 FGFR1OP2Q9NVK5 253 aa3.7□□□□□ -1.82
SYNE1-212ENST00000423061 KDM6BO15054 1643 aa3.7□□□□□ -1.82
SYNE1-212ENST00000423061 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP3.7□□□□□ -1.82
SYNE1-212ENST00000423061 LRRC14Q15048 493 aa3.7□□□□□ -1.82
SYNE1-212ENST00000423061 ANKRD27Q96NW4 1050 aa3.7□□□□□ -1.82
SYNE1-212ENST00000423061 AP1M1Q9BXS5 423 aa3.7□□□□□ -1.82
SYNE1-212ENST00000423061 RBM8AQ9Y5S9 174 aaKnown RBP3.7□□□□□ -1.82
SYNE1-212ENST00000423061 ADCY6O43306 1168 aa3.69□□□□□ -1.82
SYNE1-212ENST00000423061 CTNNA1P35221 906 aaKnown RBP3.69□□□□□ -1.82
SYNE1-212ENST00000423061 OMA1Q96E52 524 aa3.69□□□□□ -1.82
SYNE1-212ENST00000423061 CTNND2Q9UQB3 1225 aa3.69□□□□□ -1.82
SYNE1-212ENST00000423061 ARPC4-TTLL3A0A0A6YYG9 625 aa3.69□□□□□ -1.82
SYNE1-212ENST00000423061 ZNF233A6NK53 670 aa3.69□□□□□ -1.82
SYNE1-212ENST00000423061 LIN7AO14910 233 aaPredicted RBP3.69□□□□□ -1.82
SYNE1-212ENST00000423061 STKLD1Q8NE28 680 aa3.69□□□□□ -1.82
SYNE1-212ENST00000423061 ATP11BQ9Y2G3 1177 aa3.69□□□□□ -1.82
SYNE1-212ENST00000423061 HEY1Q9Y5J3 304 aa3.69□□□□□ -1.82
SYNE1-212ENST00000423061 A6NHS1 94 aa3.69□□□□□ -1.82
SYNE1-212ENST00000423061 CYTH3O43739 400 aa3.69□□□□□ -1.82
SYNE1-212ENST00000423061 SHOX2O60902 331 aaPredicted RBP3.69□□□□□ -1.82
SYNE1-212ENST00000423061 SPAG1Q07617 926 aa3.69□□□□□ -1.82
SYNE1-212ENST00000423061 NSUN2Q08J23 767 aaKnown RBP eCLIP3.69□□□□□ -1.82
SYNE1-212ENST00000423061 CWF19L2Q2TBE0 894 aaKnown RBP3.69□□□□□ -1.82
SYNE1-212ENST00000423061 ZMYM1Q5SVZ6 1142 aa3.69□□□□□ -1.82
SYNE1-212ENST00000423061 GABPB2Q8TAK5 448 aaPredicted RBP3.69□□□□□ -1.82
SYNE1-212ENST00000423061 UNC13BO14795 1591 aa3.69□□□□□ -1.82
SYNE1-212ENST00000423061 ESRRAP11474 423 aaPredicted RBP3.69□□□□□ -1.82
SYNE1-212ENST00000423061 ANO7Q6IWH7 933 aa3.69□□□□□ -1.82
SYNE1-212ENST00000423061 C12orf4Q9NQ89 552 aa3.69□□□□□ -1.82
SYNE1-212ENST00000423061 STK4Q13043 487 aa3.69□□□□□ -1.82
SYNE1-212ENST00000423061 MYO1HQ8N1T3 1032 aa3.69□□□□□ -1.82
SYNE1-212ENST00000423061 AZI2Q9H6S1 392 aa3.69□□□□□ -1.82
SYNE1-212ENST00000423061 XPO1O14980 1071 aaKnown RBP3.69□□□□□ -1.82
SYNE1-212ENST00000423061 ORC4O43929 436 aa3.69□□□□□ -1.82
SYNE1-212ENST00000423061 ENDOUP21128 410 aaKnown RBP3.69□□□□□ -1.82
SYNE1-212ENST00000423061 RPL13P26373 211 aaKnown RBP3.69□□□□□ -1.82
SYNE1-212ENST00000423061 GRAMD1CQ8IYS0 662 aa3.69□□□□□ -1.82
SYNE1-212ENST00000423061 L3MBTL3Q96JM7 780 aaPredicted RBP3.69□□□□□ -1.82
SYNE1-212ENST00000423061 BCORL1Q5H9F3 1711 aa3.69□□□□□ -1.82
SYNE1-212ENST00000423061 GSTA2P09210 222 aa3.69□□□□□ -1.82
SYNE1-212ENST00000423061 VAV1P15498 845 aa3.69□□□□□ -1.82
SYNE1-212ENST00000423061 RNASELQ05823 741 aaKnown RBP3.69□□□□□ -1.82
SYNE1-212ENST00000423061 CEP44Q9C0F1 390 aa3.69□□□□□ -1.82
SYNE1-212ENST00000423061 DPH5Q9H2P9 285 aa3.69□□□□□ -1.82
SYNE1-212ENST00000423061 AGRPO00253 132 aa3.69□□□□□ -1.82
SYNE1-212ENST00000423061 PHF12Q96QT6 1004 aa3.69□□□□□ -1.82
SYNE1-212ENST00000423061 ANGPTL2Q9UKU9 493 aa3.69□□□□□ -1.82
SYNE1-212ENST00000423061 SPO11Q9Y5K1 396 aa3.69□□□□□ -1.82
SYNE1-212ENST00000423061 SYNRGQ9UMZ2 1314 aa3.69□□□□□ -1.82
SYNE1-212ENST00000423061 PLEKHG3A1L390 1219 aa3.69□□□□□ -1.82
SYNE1-212ENST00000423061 MAGEB3O15480 346 aa3.69□□□□□ -1.82
SYNE1-212ENST00000423061 SERPINB6P35237 376 aa3.69□□□□□ -1.82
SYNE1-212ENST00000423061 NDST4Q9H3R1 872 aa3.69□□□□□ -1.82
SYNE1-212ENST00000423061 TUBA8Q9NY65 449 aaPredicted RBP3.69□□□□□ -1.82
SYNE1-212ENST00000423061 PCDHA7Q9UN72 937 aa3.69□□□□□ -1.82
SYNE1-212ENST00000423061 RASA4BC9J798 803 aa3.69□□□□□ -1.82
SYNE1-212ENST00000423061 TEX33O43247 280 aa3.69□□□□□ -1.82
SYNE1-212ENST00000423061 RASA4O43374 803 aa3.69□□□□□ -1.82
SYNE1-212ENST00000423061 NOP14P78316 857 aaKnown RBP3.69□□□□□ -1.82
SYNE1-212ENST00000423061 CREB3L3Q68CJ9 461 aa3.69□□□□□ -1.82
SYNE1-212ENST00000423061 C8orf74Q6P047 294 aa3.69□□□□□ -1.82
SYNE1-212ENST00000423061 ELMSAN1Q6PJG2 1045 aa3.69□□□□□ -1.82
SYNE1-212ENST00000423061 TTC1Q99614 292 aa3.69□□□□□ -1.82
SYNE1-212ENST00000423061 NT5C3AQ9H0P0 336 aa3.69□□□□□ -1.82
SYNE1-212ENST00000423061 SLC12A7Q9Y666 1083 aa3.69□□□□□ -1.82
SYNE1-212ENST00000423061 FTCDO95954 541 aa3.69□□□□□ -1.82
SYNE1-212ENST00000423061 IRF5Q13568 498 aa3.69□□□□□ -1.82
SYNE1-212ENST00000423061 GPR162Q16538 588 aa3.69□□□□□ -1.82
SYNE1-212ENST00000423061 CFAP221Q4G0U5 840 aa3.69□□□□□ -1.82
SYNE1-212ENST00000423061 LINS1Q8NG48 757 aa3.69□□□□□ -1.82
SYNE1-212ENST00000423061 AS3MTQ9HBK9 375 aa3.69□□□□□ -1.82
SYNE1-212ENST00000423061 SAMSN1Q9NSI8 373 aaKnown RBP3.69□□□□□ -1.82
SYNE1-212ENST00000423061 STX10O60499 249 aa3.69□□□□□ -1.82
SYNE1-212ENST00000423061 SUN5Q8TC36 379 aa3.69□□□□□ -1.82
SYNE1-212ENST00000423061 DQX1Q8TE96 717 aaKnown RBP3.69□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms