RNA–Protein interactions for RNA: ENST00000422797.5

LIMS1-207, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best)

Gene LIMS1, Length 1,544 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-207ENST00000422797 EDRF1Q3B7T1 1238 aa12.12□□□□□ -0.47
LIMS1-207ENST00000422797 FAM83BQ5T0W9 1011 aa12.12□□□□□ -0.47
LIMS1-207ENST00000422797 OTUD6BQ8N6M0 293 aa12.12□□□□□ -0.47
LIMS1-207ENST00000422797 TSEN2Q8NCE0 465 aaKnown RBP12.12□□□□□ -0.47
LIMS1-207ENST00000422797 SNX29Q8TEQ0 813 aa12.12□□□□□ -0.47
LIMS1-207ENST00000422797 SMCR8Q8TEV9 937 aaPredicted RBP12.12□□□□□ -0.47
LIMS1-207ENST00000422797 CELF1Q92879 486 aaKnown RBP12.12□□□□□ -0.47
LIMS1-207ENST00000422797 MTMR8Q96EF0 704 aa12.12□□□□□ -0.47
LIMS1-207ENST00000422797 CCDC43Q96MW1 224 aaKnown RBP12.12□□□□□ -0.47
LIMS1-207ENST00000422797 GDAP1L1Q96MZ0 367 aa12.12□□□□□ -0.47
LIMS1-207ENST00000422797 PNMA5Q96PV4 448 aa12.12□□□□□ -0.47
LIMS1-207ENST00000422797 TAF1DQ9H5J8 278 aaPredicted RBP12.12□□□□□ -0.47
LIMS1-207ENST00000422797 RIOX1Q9H6W3 641 aa12.12□□□□□ -0.47
LIMS1-207ENST00000422797 A1CFQ9NQ94 594 aaKnown RBP12.12□□□□□ -0.47
LIMS1-207ENST00000422797 GEMIN8Q9NWZ8 242 aaKnown RBP12.12□□□□□ -0.47
LIMS1-207ENST00000422797 STX8Q9UNK0 236 aa12.12□□□□□ -0.47
LIMS1-207ENST00000422797 IRS2Q9Y4H2 1338 aa12.12□□□□□ -0.47
LIMS1-207ENST00000422797 EPHB6O15197 1021 aa12.11□□□□□ -0.47
LIMS1-207ENST00000422797 PPP1R37O75864 691 aa12.11□□□□□ -0.47
LIMS1-207ENST00000422797 GFPT2O94808 682 aa12.11□□□□□ -0.47
LIMS1-207ENST00000422797 LSP1P33241 339 aa12.11□□□□□ -0.47
LIMS1-207ENST00000422797 TXKP42681 527 aa12.11□□□□□ -0.47
LIMS1-207ENST00000422797 MATR3P43243 847 aaKnown RBP eCLIP12.11□□□□□ -0.47
LIMS1-207ENST00000422797 GUCY2DQ02846 1103 aa12.11□□□□□ -0.47
LIMS1-207ENST00000422797 GFPT1Q06210 699 aaPredicted RBP12.11□□□□□ -0.47
LIMS1-207ENST00000422797 FAM26FQ5R3K3 315 aa12.11□□□□□ -0.47
LIMS1-207ENST00000422797 ZNF804AQ7Z570 1209 aa12.11□□□□□ -0.47
LIMS1-207ENST00000422797 VPS36Q86VN1 386 aa12.11□□□□□ -0.47
LIMS1-207ENST00000422797 TRIM59Q8IWR1 403 aa12.11□□□□□ -0.47
LIMS1-207ENST00000422797 PRPF38AQ8NAV1 312 aaKnown RBP12.11□□□□□ -0.47
LIMS1-207ENST00000422797 USP38Q8NB14 1042 aa12.11□□□□□ -0.47
LIMS1-207ENST00000422797 ACTRT1Q8TDG2 376 aa12.11□□□□□ -0.47
LIMS1-207ENST00000422797 HDAC7Q8WUI4 952 aa12.11□□□□□ -0.47
LIMS1-207ENST00000422797 INPP4AQ96PE3 977 aaPredicted RBP12.11□□□□□ -0.47
LIMS1-207ENST00000422797 EYA3Q99504 573 aa12.11□□□□□ -0.47
LIMS1-207ENST00000422797 ISCUQ9H1K1 167 aa12.11□□□□□ -0.47
LIMS1-207ENST00000422797 ACTR5Q9H9F9 607 aaPredicted RBP12.11□□□□□ -0.47
LIMS1-207ENST00000422797 EPB41L5Q9HCM4 733 aa12.11□□□□□ -0.47
LIMS1-207ENST00000422797 SWAP70Q9UH65 585 aa12.11□□□□□ -0.47
LIMS1-207ENST00000422797 TMEM59LQ9UK28 342 aa12.11□□□□□ -0.47
LIMS1-207ENST00000422797 INTUQ9ULD6 942 aa12.11□□□□□ -0.47
LIMS1-207ENST00000422797 DAAM1Q9Y4D1 1078 aa12.11□□□□□ -0.47
LIMS1-207ENST00000422797 SNED1Q8TER0 1413 aa12.11□□□□□ -0.47
LIMS1-207ENST00000422797 PITPNM2Q9BZ72 1349 aa12.11□□□□□ -0.47
LIMS1-207ENST00000422797 A0A0A6YYK5 440 aaPredicted RBP12.11□□□□□ -0.47
LIMS1-207ENST00000422797 USP17L3A6NCW0 530 aa12.11□□□□□ -0.47
LIMS1-207ENST00000422797 USP17L4A6NCW7 530 aa12.11□□□□□ -0.47
LIMS1-207ENST00000422797 PALMO75781 387 aa12.11□□□□□ -0.47
LIMS1-207ENST00000422797 EPS15P42566 896 aa12.11□□□□□ -0.47
LIMS1-207ENST00000422797 SLC7A5Q01650 507 aa12.11□□□□□ -0.47
LIMS1-207ENST00000422797 COASYQ13057 564 aa12.11□□□□□ -0.47
LIMS1-207ENST00000422797 RPS6KA1Q15418 735 aa12.11□□□□□ -0.47
LIMS1-207ENST00000422797 PTGISQ16647 500 aa12.11□□□□□ -0.47
LIMS1-207ENST00000422797 AGBL2Q5U5Z8 902 aa12.11□□□□□ -0.47
LIMS1-207ENST00000422797 USP17L1Q7RTZ2 530 aa12.11□□□□□ -0.47
LIMS1-207ENST00000422797 SYCE1Q8N0S2 351 aa12.11□□□□□ -0.47
LIMS1-207ENST00000422797 SH3RF3Q8TEJ3 882 aaPredicted RBP12.11□□□□□ -0.47
LIMS1-207ENST00000422797 DDX12PQ92771 950 aa12.11□□□□□ -0.47
LIMS1-207ENST00000422797 ARL8AQ96BM9 186 aa12.11□□□□□ -0.47
LIMS1-207ENST00000422797 CABS1Q96KC9 395 aa12.11□□□□□ -0.47
LIMS1-207ENST00000422797 MXD3Q9BW11 206 aa12.11□□□□□ -0.47
LIMS1-207ENST00000422797 LSM14BQ9BX40 385 aaKnown RBP12.11□□□□□ -0.47
LIMS1-207ENST00000422797 FBXL5Q9UKA1 691 aa12.11□□□□□ -0.47
LIMS1-207ENST00000422797 UTP18Q9Y5J1 556 aaKnown RBP eCLIP12.11□□□□□ -0.47
LIMS1-207ENST00000422797 DDX60LQ5H9U9 1706 aaKnown RBP12.11□□□□□ -0.47
LIMS1-207ENST00000422797 COL16A1Q07092 1604 aaPredicted RBP12.1□□□□□ -0.47
LIMS1-207ENST00000422797 ATAD5Q96QE3 1844 aa12.1□□□□□ -0.47
LIMS1-207ENST00000422797 NHSQ6T4R5 1651 aa12.1□□□□□ -0.47
LIMS1-207ENST00000422797 GCOM1H8Y6P7 765 aaPredicted RBP12.1□□□□□ -0.47
LIMS1-207ENST00000422797 TRAF5O00463 557 aa12.1□□□□□ -0.47
LIMS1-207ENST00000422797 FAM107AO95990 144 aa12.1□□□□□ -0.47
LIMS1-207ENST00000422797 MYZAPP0CAP1 466 aa12.1□□□□□ -0.47
LIMS1-207ENST00000422797 MDH1P40925 334 aaKnown RBP12.1□□□□□ -0.47
LIMS1-207ENST00000422797 CDK8P49336 464 aa12.1□□□□□ -0.47
LIMS1-207ENST00000422797 LIG3P49916 1009 aa12.1□□□□□ -0.47
LIMS1-207ENST00000422797 USP11P51784 963 aa12.1□□□□□ -0.47
LIMS1-207ENST00000422797 NPEPPSP55786 919 aa12.1□□□□□ -0.47
LIMS1-207ENST00000422797 IRX3P78415 501 aaPredicted RBP12.1□□□□□ -0.47
LIMS1-207ENST00000422797 DDR1Q08345 913 aa12.1□□□□□ -0.47
LIMS1-207ENST00000422797 KLHL30Q0D2K2 578 aa12.1□□□□□ -0.47
LIMS1-207ENST00000422797 KCNMA1Q12791 1236 aa12.1□□□□□ -0.47
LIMS1-207ENST00000422797 RC3H1Q5TC82 1133 aaKnown RBP12.1□□□□□ -0.47
LIMS1-207ENST00000422797 C3orf67Q6ZVT6 689 aa12.1□□□□□ -0.47
LIMS1-207ENST00000422797 KCTD17Q8N5Z5 321 aa12.1□□□□□ -0.47
LIMS1-207ENST00000422797 DYNLL2Q96FJ2 89 aa12.1□□□□□ -0.47
LIMS1-207ENST00000422797 ZFP91Q96JP5 570 aaPredicted RBP12.1□□□□□ -0.47
LIMS1-207ENST00000422797 SLITRK6Q9H5Y7 841 aa12.1□□□□□ -0.47
LIMS1-207ENST00000422797 NFU1Q9UMS0 254 aa12.1□□□□□ -0.47
LIMS1-207ENST00000422797 DIS3Q9Y2L1 958 aaKnown RBP12.1□□□□□ -0.47
LIMS1-207ENST00000422797 MYO3BQ8WXR4 1341 aa12.09□□□□□ -0.47
LIMS1-207ENST00000422797 GOLGA6L7A0A1B0GV03 622 aa12.09□□□□□ -0.47
LIMS1-207ENST00000422797 ZNF233A6NK53 670 aa12.09□□□□□ -0.47
LIMS1-207ENST00000422797 BHMG1C9JSJ3 638 aaPredicted RBP12.09□□□□□ -0.47
LIMS1-207ENST00000422797 CETN3O15182 167 aa12.09□□□□□ -0.47
LIMS1-207ENST00000422797 NCK2O43639 380 aa12.09□□□□□ -0.47
LIMS1-207ENST00000422797 FLOT1O75955 427 aa12.09□□□□□ -0.47
LIMS1-207ENST00000422797 GLI1P08151 1106 aa12.09□□□□□ -0.47
LIMS1-207ENST00000422797 CARSP49589 748 aaKnown RBP12.09□□□□□ -0.47
LIMS1-207ENST00000422797 PDCLQ13371 301 aa12.09□□□□□ -0.47
LIMS1-207ENST00000422797 KIAA0753Q2KHM9 967 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms