RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 DNAJC25-GNG10A0A024R161 153 aa19.24■□□□□ 0.67
CCDC28B-202ENST00000421922 SLC15A5A6NIM6 579 aa19.24■□□□□ 0.67
CCDC28B-202ENST00000421922 DDX39AO00148 427 aaKnown RBP19.24■□□□□ 0.67
CCDC28B-202ENST00000421922 SLFN14P0C7P3 912 aa19.24■□□□□ 0.67
CCDC28B-202ENST00000421922 LBX1P52954 281 aa19.24■□□□□ 0.67
CCDC28B-202ENST00000421922 LONRF3Q496Y0 759 aa19.24■□□□□ 0.67
CCDC28B-202ENST00000421922 SASS6Q6UVJ0 657 aa19.24■□□□□ 0.67
CCDC28B-202ENST00000421922 ZIC5Q96T25 663 aa19.24■□□□□ 0.67
CCDC28B-202ENST00000421922 NT5C3AQ9H0P0 336 aa19.24■□□□□ 0.67
CCDC28B-202ENST00000421922 R3HDMLQ9H3Y0 253 aa19.24■□□□□ 0.67
CCDC28B-202ENST00000421922 CUEDC2Q9H467 287 aa19.24■□□□□ 0.67
CCDC28B-202ENST00000421922 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP19.23■□□□□ 0.67
CCDC28B-202ENST00000421922 PSMD10O75832 226 aa19.23■□□□□ 0.67
CCDC28B-202ENST00000421922 PPP2R5CQ13362 524 aa19.23■□□□□ 0.67
CCDC28B-202ENST00000421922 C17orf99Q6UX52 265 aa19.23■□□□□ 0.67
CCDC28B-202ENST00000421922 PLIN2Q99541 437 aa19.23■□□□□ 0.67
CCDC28B-202ENST00000421922 MAGEF1Q9HAY2 307 aa19.23■□□□□ 0.67
CCDC28B-202ENST00000421922 VAV3Q9UKW4 847 aa19.23■□□□□ 0.67
CCDC28B-202ENST00000421922 A0A087X0B3 334 aa19.22■□□□□ 0.67
CCDC28B-202ENST00000421922 ACTN4O43707 911 aaKnown RBP19.22■□□□□ 0.67
CCDC28B-202ENST00000421922 PLCG1P19174 1290 aa19.22■□□□□ 0.67
CCDC28B-202ENST00000421922 ZNF445P59923 1031 aa19.22■□□□□ 0.67
CCDC28B-202ENST00000421922 GRB14Q14449 540 aa19.22■□□□□ 0.67
CCDC28B-202ENST00000421922 SEPT14Q6ZU15 432 aa19.22■□□□□ 0.67
CCDC28B-202ENST00000421922 STK17AQ9UEE5 414 aa19.22■□□□□ 0.67
CCDC28B-202ENST00000421922 MCM3APO60318 1980 aa19.22■□□□□ 0.67
CCDC28B-202ENST00000421922 ECM2O94769 699 aaPredicted RBP19.21■□□□□ 0.67
CCDC28B-202ENST00000421922 SMC2O95347 1197 aa19.21■□□□□ 0.67
CCDC28B-202ENST00000421922 CCDC192P0DO97 292 aa19.21■□□□□ 0.67
CCDC28B-202ENST00000421922 EDNRBP24530 442 aa19.21■□□□□ 0.67
CCDC28B-202ENST00000421922 KRT76Q01546 638 aa19.21■□□□□ 0.67
CCDC28B-202ENST00000421922 POSTNQ15063 836 aa19.21■□□□□ 0.67
CCDC28B-202ENST00000421922 LRSAM1Q6UWE0 723 aa19.21■□□□□ 0.67
CCDC28B-202ENST00000421922 OTOP1Q7RTM1 612 aa19.21■□□□□ 0.67
CCDC28B-202ENST00000421922 MIER3Q7Z3K6 550 aa19.21■□□□□ 0.67
CCDC28B-202ENST00000421922 ELOA2Q8IYF1 753 aaPredicted RBP19.21■□□□□ 0.67
CCDC28B-202ENST00000421922 SAMM50Q9Y512 469 aa19.21■□□□□ 0.67
CCDC28B-202ENST00000421922 ASTN1O14525 1302 aa19.21■□□□□ 0.67
CCDC28B-202ENST00000421922 MGAMO43451 1857 aa19.2■□□□□ 0.66
CCDC28B-202ENST00000421922 TNPO2O14787 897 aaKnown RBP19.2■□□□□ 0.66
CCDC28B-202ENST00000421922 AFMP43652 599 aa19.2■□□□□ 0.66
CCDC28B-202ENST00000421922 SPIRE1Q08AE8 756 aa19.2■□□□□ 0.66
CCDC28B-202ENST00000421922 ZNF792Q3KQV3 632 aa19.2■□□□□ 0.66
CCDC28B-202ENST00000421922 KCNV1Q6PIU1 500 aa19.2■□□□□ 0.66
CCDC28B-202ENST00000421922 NEK9Q8TD19 979 aa19.2■□□□□ 0.66
CCDC28B-202ENST00000421922 MMTAG2Q9BU76 263 aaKnown RBP19.2■□□□□ 0.66
CCDC28B-202ENST00000421922 UNC45AQ9H3U1 944 aa19.2■□□□□ 0.66
CCDC28B-202ENST00000421922 TSPY26PQ9H489 355 aa19.2■□□□□ 0.66
CCDC28B-202ENST00000421922 DIS3Q9Y2L1 958 aaKnown RBP19.2■□□□□ 0.66
CCDC28B-202ENST00000421922 HSPA8P11142 646 aaKnown RBP19.19■□□□□ 0.66
CCDC28B-202ENST00000421922 MAP2K2P36507 400 aa19.19■□□□□ 0.66
CCDC28B-202ENST00000421922 JAK3P52333 1124 aa19.19■□□□□ 0.66
CCDC28B-202ENST00000421922 AMPD3Q01432 767 aa19.19■□□□□ 0.66
CCDC28B-202ENST00000421922 ITGB3BPQ13352 177 aaPredicted RBP19.19■□□□□ 0.66
CCDC28B-202ENST00000421922 E2F4Q16254 413 aa19.19■□□□□ 0.66
CCDC28B-202ENST00000421922 RBM43Q6ZSC3 357 aaKnown RBP19.19■□□□□ 0.66
CCDC28B-202ENST00000421922 EEPD1Q7L9B9 569 aa19.19■□□□□ 0.66
CCDC28B-202ENST00000421922 ZNF467Q7Z7K2 595 aaPredicted RBP19.19■□□□□ 0.66
CCDC28B-202ENST00000421922 GIMAP8Q8ND71 665 aaPredicted RBP19.19■□□□□ 0.66
CCDC28B-202ENST00000421922 SOCS4Q8WXH5 440 aa19.19■□□□□ 0.66
CCDC28B-202ENST00000421922 NUDT12Q9BQG2 462 aa19.19■□□□□ 0.66
CCDC28B-202ENST00000421922 EIF2AK1Q9BQI3 630 aaKnown RBP19.19■□□□□ 0.66
CCDC28B-202ENST00000421922 NFASCO94856 1347 aa19.19■□□□□ 0.66
CCDC28B-202ENST00000421922 DOCK5Q9H7D0 1870 aa19.18■□□□□ 0.66
CCDC28B-202ENST00000421922 POTEB3A0JP26 581 aa19.18■□□□□ 0.66
CCDC28B-202ENST00000421922 WDR64B1ANS9 1081 aa19.18■□□□□ 0.66
CCDC28B-202ENST00000421922 SPATA31C2B4DYI2 1134 aa19.18■□□□□ 0.66
CCDC28B-202ENST00000421922 COBLO75128 1261 aa19.18■□□□□ 0.66
CCDC28B-202ENST00000421922 RPA1P27694 616 aa19.18■□□□□ 0.66
CCDC28B-202ENST00000421922 SFNP31947 248 aa19.18■□□□□ 0.66
CCDC28B-202ENST00000421922 ICAM3P32942 547 aa19.18■□□□□ 0.66
CCDC28B-202ENST00000421922 FCGRTP55899 365 aa19.18■□□□□ 0.66
CCDC28B-202ENST00000421922 GRB10Q13322 594 aa19.18■□□□□ 0.66
CCDC28B-202ENST00000421922 PNOCQ13519 176 aa19.18■□□□□ 0.66
CCDC28B-202ENST00000421922 KIF22Q14807 665 aa19.18■□□□□ 0.66
CCDC28B-202ENST00000421922 EPHA7Q15375 998 aa19.18■□□□□ 0.66
CCDC28B-202ENST00000421922 TMEM119Q4V9L6 283 aa19.18■□□□□ 0.66
CCDC28B-202ENST00000421922 PDXDC2PQ6P474 469 aa19.18■□□□□ 0.66
CCDC28B-202ENST00000421922 POTEBQ6S5H4 581 aa19.18■□□□□ 0.66
CCDC28B-202ENST00000421922 ARMCX2Q7L311 632 aa19.18■□□□□ 0.66
CCDC28B-202ENST00000421922 SMARCE1Q969G3 411 aa19.18■□□□□ 0.66
CCDC28B-202ENST00000421922 PAGE5Q96GU1 130 aa19.18■□□□□ 0.66
CCDC28B-202ENST00000421922 ABHD8Q96I13 439 aa19.18■□□□□ 0.66
CCDC28B-202ENST00000421922 FGD4Q96M96 766 aa19.18■□□□□ 0.66
CCDC28B-202ENST00000421922 POLR3CQ9BUI4 534 aaPredicted RBP19.18■□□□□ 0.66
CCDC28B-202ENST00000421922 LRRC27Q9C0I9 530 aa19.18■□□□□ 0.66
CCDC28B-202ENST00000421922 JPH1Q9HDC5 661 aaPredicted RBP19.18■□□□□ 0.66
CCDC28B-202ENST00000421922 TUFT1Q9NNX1 390 aa19.18■□□□□ 0.66
CCDC28B-202ENST00000421922 KIAA1468Q9P260 1216 aa19.18■□□□□ 0.66
CCDC28B-202ENST00000421922 LOXHD1Q8IVV2 1947 aa19.18■□□□□ 0.66
CCDC28B-202ENST00000421922 CYP4A11Q02928 519 aa19.17■□□□□ 0.66
CCDC28B-202ENST00000421922 MAP2K5Q13163 448 aa19.17■□□□□ 0.66
CCDC28B-202ENST00000421922 GSE1Q14687 1217 aa19.17■□□□□ 0.66
CCDC28B-202ENST00000421922 HYIQ5T013 277 aa19.17■□□□□ 0.66
CCDC28B-202ENST00000421922 ZNF746Q6NUN9 644 aaPredicted RBP19.17■□□□□ 0.66
CCDC28B-202ENST00000421922 SV2BQ7L1I2 683 aa19.17■□□□□ 0.66
CCDC28B-202ENST00000421922 LARP4BQ92615 738 aaKnown RBP19.17■□□□□ 0.66
CCDC28B-202ENST00000421922 CCDC47Q96A33 483 aaKnown RBP19.17■□□□□ 0.66
CCDC28B-202ENST00000421922 PNMA5Q96PV4 448 aa19.17■□□□□ 0.66
CCDC28B-202ENST00000421922 KIAA1024Q9UPX6 916 aa19.17■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms