RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 USP49Q70CQ1 688 aa9.31□□□□□ -0.92
USP54-203ENST00000418501 DHX37Q8IY37 1157 aaKnown RBP9.31□□□□□ -0.92
USP54-203ENST00000418501 GRAMD1CQ8IYS0 662 aa9.31□□□□□ -0.92
USP54-203ENST00000418501 ADSSL1Q8N142 457 aa9.31□□□□□ -0.92
USP54-203ENST00000418501 DNERQ8NFT8 737 aa9.31□□□□□ -0.92
USP54-203ENST00000418501 L3MBTL3Q96JM7 780 aaPredicted RBP9.31□□□□□ -0.92
USP54-203ENST00000418501 ODF2LQ9ULJ1 636 aa9.31□□□□□ -0.92
USP54-203ENST00000418501 IVNS1ABPQ9Y6Y0 642 aa9.31□□□□□ -0.92
USP54-203ENST00000418501 MYH15Q9Y2K3 1946 aa9.31□□□□□ -0.92
USP54-203ENST00000418501 POTEMA6NI47 508 aa9.31□□□□□ -0.92
USP54-203ENST00000418501 POTEB2H3BUK9 544 aa9.31□□□□□ -0.92
USP54-203ENST00000418501 ATP2A1O14983 1001 aa9.31□□□□□ -0.92
USP54-203ENST00000418501 PPP1R11O60927 126 aaPredicted RBP9.31□□□□□ -0.92
USP54-203ENST00000418501 CCDC172P0C7W6 258 aa9.31□□□□□ -0.92
USP54-203ENST00000418501 EPB41P11171 864 aaKnown RBP9.31□□□□□ -0.92
USP54-203ENST00000418501 KCNJ6P48051 423 aa9.31□□□□□ -0.92
USP54-203ENST00000418501 FKBP3Q00688 224 aaKnown RBP9.31□□□□□ -0.92
USP54-203ENST00000418501 UBXN1Q04323 297 aa9.31□□□□□ -0.92
USP54-203ENST00000418501 PRKG1Q13976 671 aa9.31□□□□□ -0.92
USP54-203ENST00000418501 NOLC1Q14978 699 aaKnown RBP eCLIP9.31□□□□□ -0.92
USP54-203ENST00000418501 CATSPERGQ6ZRH7 1159 aa9.31□□□□□ -0.92
USP54-203ENST00000418501 VSTM4Q8IW00 320 aa9.31□□□□□ -0.92
USP54-203ENST00000418501 SYCP3Q8IZU3 236 aa9.31□□□□□ -0.92
USP54-203ENST00000418501 DDX12PQ92771 950 aa9.31□□□□□ -0.92
USP54-203ENST00000418501 DRC1Q96MC2 740 aa9.31□□□□□ -0.92
USP54-203ENST00000418501 ARHGAP6O43182 974 aa9.31□□□□□ -0.92
USP54-203ENST00000418501 VEGFAP15692 232 aaPredicted RBP9.31□□□□□ -0.92
USP54-203ENST00000418501 PPP2R5CQ13362 524 aa9.31□□□□□ -0.92
USP54-203ENST00000418501 FAM160B1Q5W0V3 765 aa9.31□□□□□ -0.92
USP54-203ENST00000418501 DYMQ7RTS9 669 aa9.31□□□□□ -0.92
USP54-203ENST00000418501 SMAP1Q8IYB5 467 aaPredicted RBP9.31□□□□□ -0.92
USP54-203ENST00000418501 STAMQ92783 540 aa9.31□□□□□ -0.92
USP54-203ENST00000418501 SLC5A5Q92911 643 aa9.31□□□□□ -0.92
USP54-203ENST00000418501 JPH2Q9BR39 696 aaPredicted RBP9.31□□□□□ -0.92
USP54-203ENST00000418501 TESPA1A2RU30 521 aaPredicted RBP9.3□□□□□ -0.92
USP54-203ENST00000418501 GLTPD2A6NH11 291 aa9.3□□□□□ -0.92
USP54-203ENST00000418501 CHMP2AO43633 222 aa9.3□□□□□ -0.92
USP54-203ENST00000418501 GRB10Q13322 594 aa9.3□□□□□ -0.92
USP54-203ENST00000418501 TRPM4Q8TD43 1214 aa9.3□□□□□ -0.92
USP54-203ENST00000418501 EIF2AK1Q9BQI3 630 aaKnown RBP9.3□□□□□ -0.92
USP54-203ENST00000418501 NOC4LQ9BVI4 516 aaKnown RBP9.3□□□□□ -0.92
USP54-203ENST00000418501 SRRTQ9BXP5 876 aaKnown RBP9.3□□□□□ -0.92
USP54-203ENST00000418501 JADE2Q9NQC1 790 aa9.3□□□□□ -0.92
USP54-203ENST00000418501 DAAM1Q9Y4D1 1078 aa9.3□□□□□ -0.92
USP54-203ENST00000418501 PAXBP1Q9Y5B6 917 aa9.3□□□□□ -0.92
USP54-203ENST00000418501 TRAF5O00463 557 aa9.3□□□□□ -0.92
USP54-203ENST00000418501 MSH4O15457 936 aa9.3□□□□□ -0.92
USP54-203ENST00000418501 COPB1P53618 953 aaKnown RBP9.3□□□□□ -0.92
USP54-203ENST00000418501 PTPN14Q15678 1187 aa9.3□□□□□ -0.92
USP54-203ENST00000418501 NOM1Q5C9Z4 860 aaKnown RBP9.3□□□□□ -0.92
USP54-203ENST00000418501 IFT74Q96LB3 600 aa9.3□□□□□ -0.92
USP54-203ENST00000418501 PRIMPOLQ96LW4 560 aa9.3□□□□□ -0.92
USP54-203ENST00000418501 LIMA1Q9UHB6 759 aaKnown RBP9.3□□□□□ -0.92
USP54-203ENST00000418501 STX10O60499 249 aa9.3□□□□□ -0.92
USP54-203ENST00000418501 CETPP11597 493 aa9.3□□□□□ -0.92
USP54-203ENST00000418501 KRT13P13646 458 aa9.3□□□□□ -0.92
USP54-203ENST00000418501 CDC25AP30304 524 aa9.3□□□□□ -0.92
USP54-203ENST00000418501 SNRPFP62306 86 aaKnown RBP9.3□□□□□ -0.92
USP54-203ENST00000418501 TMTC1Q8IUR5 882 aa9.3□□□□□ -0.92
USP54-203ENST00000418501 EHBP1Q8NDI1 1231 aa9.3□□□□□ -0.92
USP54-203ENST00000418501 VTI1AQ96AJ9 217 aa9.3□□□□□ -0.92
USP54-203ENST00000418501 TMEM206Q9H813 350 aa9.3□□□□□ -0.92
USP54-203ENST00000418501 LUC7L2Q9Y383 392 aaKnown RBP9.3□□□□□ -0.92
USP54-203ENST00000418501 PPME1Q9Y570 386 aa9.3□□□□□ -0.92
USP54-203ENST00000418501 ECM29Q5VYK3 1845 aa9.3□□□□□ -0.92
USP54-203ENST00000418501 MEIS1O00470 390 aa9.29□□□□□ -0.92
USP54-203ENST00000418501 CYLC1P35663 651 aaPredicted RBP9.29□□□□□ -0.92
USP54-203ENST00000418501 NEDD9Q14511 834 aa9.29□□□□□ -0.92
USP54-203ENST00000418501 VWA3BQ502W6 1294 aa9.29□□□□□ -0.92
USP54-203ENST00000418501 RASGRP2Q7LDG7 609 aa9.29□□□□□ -0.92
USP54-203ENST00000418501 LRRC8AQ8IWT6 810 aa9.29□□□□□ -0.92
USP54-203ENST00000418501 MYCT1Q8N699 235 aa9.29□□□□□ -0.92
USP54-203ENST00000418501 SYT2Q8N9I0 419 aaPredicted RBP9.29□□□□□ -0.92
USP54-203ENST00000418501 DDX55Q8NHQ9 600 aaKnown RBP eCLIP9.29□□□□□ -0.92
USP54-203ENST00000418501 ZKSCAN4Q969J2 545 aaPredicted RBP9.29□□□□□ -0.92
USP54-203ENST00000418501 ATG4CQ96DT6 458 aa9.29□□□□□ -0.92
USP54-203ENST00000418501 AGBL1Q96MI9 1066 aa9.29□□□□□ -0.92
USP54-203ENST00000418501 MRPL44Q9H9J2 332 aaKnown RBP9.29□□□□□ -0.92
USP54-203ENST00000418501 FRMD4BQ9Y2L6 1034 aa9.29□□□□□ -0.92
USP54-203ENST00000418501 TRIM21P19474 475 aaKnown RBP9.29□□□□□ -0.92
USP54-203ENST00000418501 QARSP47897 775 aaKnown RBP9.29□□□□□ -0.92
USP54-203ENST00000418501 PSMC5P62195 406 aa9.29□□□□□ -0.92
USP54-203ENST00000418501 TBC1D8BQ0IIM8 1120 aa9.29□□□□□ -0.92
USP54-203ENST00000418501 ZNF746Q6NUN9 644 aaPredicted RBP9.29□□□□□ -0.92
USP54-203ENST00000418501 CACNA2D4Q7Z3S7 1137 aa9.29□□□□□ -0.92
USP54-203ENST00000418501 VPS36Q86VN1 386 aa9.29□□□□□ -0.92
USP54-203ENST00000418501 NCAPG2Q86XI2 1143 aa9.29□□□□□ -0.92
USP54-203ENST00000418501 TRMT44Q8IYL2 757 aaKnown RBP9.29□□□□□ -0.92
USP54-203ENST00000418501 SYTL5Q8TDW5 730 aaPredicted RBP9.29□□□□□ -0.92
USP54-203ENST00000418501 SMCR8Q8TEV9 937 aaPredicted RBP9.29□□□□□ -0.92
USP54-203ENST00000418501 PARVGQ9HBI0 331 aa9.29□□□□□ -0.92
USP54-203ENST00000418501 NRBP2Q9NSY0 501 aa9.29□□□□□ -0.92
USP54-203ENST00000418501 EMILIN3Q9NT22 766 aa9.29□□□□□ -0.92
USP54-203ENST00000418501 ITIH6Q6UXX5 1313 aa9.29□□□□□ -0.92
USP54-203ENST00000418501 PSME4Q14997 1843 aa9.29□□□□□ -0.92
USP54-203ENST00000418501 A0A1W2PQC6 194 aa9.29□□□□□ -0.92
USP54-203ENST00000418501 PP2D1A8MPX8 630 aa9.29□□□□□ -0.92
USP54-203ENST00000418501 FOXN1O15353 648 aa9.29□□□□□ -0.92
USP54-203ENST00000418501 TERF1P54274 439 aa9.29□□□□□ -0.92
USP54-203ENST00000418501 GHRHRQ02643 423 aa9.29□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms