RNA–Protein interactions for RNA: ENST00000417521.5

DDR1-231, Transcript of discoidin domain receptor tyrosine kinase 1, human

TSL 5

Gene DDR1, Length 1,479 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDR1-231	ENST00000417521	ZNF274	Q96GC6	653 aa	Predicted RBP	18.74	■□□□□ 0.59
DDR1-231	ENST00000417521	C16orf70	Q9BSU1	422 aa		18.74	■□□□□ 0.59
DDR1-231	ENST00000417521	ALG1	Q9BT22	464 aa		18.74	■□□□□ 0.59
DDR1-231	ENST00000417521	RNF26	Q9BY78	433 aa	Predicted RBP	18.74	■□□□□ 0.59
DDR1-231	ENST00000417521	HDAC6	Q9UBN7	1215 aa		18.74	■□□□□ 0.59
DDR1-231	ENST00000417521	ESYT2	A0FGR8	921 aa		18.73	■□□□□ 0.59
DDR1-231	ENST00000417521	FGB	P02675	491 aa		18.73	■□□□□ 0.59
DDR1-231	ENST00000417521	ACR	P10323	421 aa		18.73	■□□□□ 0.59
DDR1-231	ENST00000417521	CLK2	P49760	499 aa	Known RBP	18.73	■□□□□ 0.59
DDR1-231	ENST00000417521	BFSP2	Q13515	415 aa		18.73	■□□□□ 0.59
DDR1-231	ENST00000417521	PKN1	Q16512	942 aa		18.73	■□□□□ 0.59
DDR1-231	ENST00000417521	RASIP1	Q5U651	963 aa		18.73	■□□□□ 0.59
DDR1-231	ENST00000417521	GDF6	Q6KF10	455 aa	Predicted RBP	18.73	■□□□□ 0.59
DDR1-231	ENST00000417521	RETREG2	Q8NC44	543 aa		18.73	■□□□□ 0.59
DDR1-231	ENST00000417521	GPR20	Q99678	358 aa		18.73	■□□□□ 0.59
DDR1-231	ENST00000417521	LARP6	Q9BRS8	491 aa	Known RBP	18.73	■□□□□ 0.59
DDR1-231	ENST00000417521	ZMYND12	Q9H0C1	365 aa		18.73	■□□□□ 0.59
DDR1-231	ENST00000417521	JADE2	Q9NQC1	790 aa		18.73	■□□□□ 0.59
DDR1-231	ENST00000417521		A0A0C4DFX4	3053 aa		18.72	■□□□□ 0.59
DDR1-231	ENST00000417521	HSFX4	A0A1B0GTS1	333 aa	Predicted RBP	18.72	■□□□□ 0.59
DDR1-231	ENST00000417521	HSFX3	A0A1B0GWH4	333 aa	Predicted RBP	18.72	■□□□□ 0.59
DDR1-231	ENST00000417521		H3BRB1	525 aa		18.72	■□□□□ 0.59
DDR1-231	ENST00000417521	NEK4	P51957	841 aa		18.72	■□□□□ 0.59
DDR1-231	ENST00000417521	CCT2	P78371	535 aa	Known RBP	18.72	■□□□□ 0.59
DDR1-231	ENST00000417521	MTMR1	Q13613	665 aa		18.72	■□□□□ 0.59
DDR1-231	ENST00000417521	MCTP2	Q6DN12	878 aa		18.72	■□□□□ 0.59
DDR1-231	ENST00000417521	CCDC155	Q8N6L0	562 aa		18.72	■□□□□ 0.59
DDR1-231	ENST00000417521	CAGE1	Q8TC20	777 aa		18.72	■□□□□ 0.59
DDR1-231	ENST00000417521	HERVK_113	Q902F9	699 aa		18.72	■□□□□ 0.59
DDR1-231	ENST00000417521	PHKB	Q93100	1093 aa		18.72	■□□□□ 0.59
DDR1-231	ENST00000417521	SCLY	Q96I15	445 aa		18.72	■□□□□ 0.59
DDR1-231	ENST00000417521	CTAGE1	Q96RT6	745 aa		18.72	■□□□□ 0.59
DDR1-231	ENST00000417521	ANO3	Q9BYT9	981 aa		18.72	■□□□□ 0.59
DDR1-231	ENST00000417521	TUT1	Q9H6E5	874 aa	Known RBP	18.72	■□□□□ 0.59
DDR1-231	ENST00000417521	SCN10A	Q9Y5Y9	1956 aa		18.72	■□□□□ 0.59
DDR1-231	ENST00000417521	ATP9A	O75110	1047 aa		18.71	■□□□□ 0.59
DDR1-231	ENST00000417521	LGALS2	P05162	132 aa		18.71	■□□□□ 0.59
DDR1-231	ENST00000417521	PFKM	P08237	780 aa		18.71	■□□□□ 0.59
DDR1-231	ENST00000417521	KCNA2	P16389	499 aa		18.71	■□□□□ 0.59
DDR1-231	ENST00000417521	RFC2	P35250	354 aa		18.71	■□□□□ 0.59
DDR1-231	ENST00000417521	MXRA8	Q9BRK3	442 aa		18.71	■□□□□ 0.59
DDR1-231	ENST00000417521	MTIF3	Q9H2K0	278 aa	Known RBP	18.71	■□□□□ 0.59
DDR1-231	ENST00000417521	NCOA5	Q9HCD5	579 aa	Known RBP	18.71	■□□□□ 0.59
DDR1-231	ENST00000417521	C6orf50	Q9HD87	102 aa		18.71	■□□□□ 0.59
DDR1-231	ENST00000417521	IQCF3	P0C7M6	154 aa		18.71	■□□□□ 0.59
DDR1-231	ENST00000417521	GNA11	P29992	359 aa		18.71	■□□□□ 0.59
DDR1-231	ENST00000417521	SREBF1	P36956	1147 aa		18.71	■□□□□ 0.59
DDR1-231	ENST00000417521	RBL2	Q08999	1139 aa		18.71	■□□□□ 0.59
DDR1-231	ENST00000417521		Q7L0L9	218 aa		18.71	■□□□□ 0.59
DDR1-231	ENST00000417521	VWCE	Q96DN2	955 aa		18.71	■□□□□ 0.59
DDR1-231	ENST00000417521	MTMR10	Q9NXD2	777 aa		18.71	■□□□□ 0.59
DDR1-231	ENST00000417521	AK2	P54819	239 aa		18.7	■□□□□ 0.58
DDR1-231	ENST00000417521	PTK7	Q13308	1070 aa		18.7	■□□□□ 0.58
DDR1-231	ENST00000417521	CEP55	Q53EZ4	464 aa		18.7	■□□□□ 0.58
DDR1-231	ENST00000417521	AFAP1L1	Q8TED9	768 aa		18.7	■□□□□ 0.58
DDR1-231	ENST00000417521	PGBD1	Q96JS3	809 aa		18.7	■□□□□ 0.58
DDR1-231	ENST00000417521	SLC26A6	Q9BXS9	759 aa		18.7	■□□□□ 0.58
DDR1-231	ENST00000417521	KCNH7	Q9NS40	1196 aa		18.7	■□□□□ 0.58
DDR1-231	ENST00000417521	TMEM260	Q9NX78	707 aa		18.7	■□□□□ 0.58
DDR1-231	ENST00000417521	CPLX1	O14810	134 aa		18.69	■□□□□ 0.58
DDR1-231	ENST00000417521	ZNF697	Q5TEC3	545 aa		18.69	■□□□□ 0.58
DDR1-231	ENST00000417521	CPLX2	Q6PUV4	134 aa	Known RBP	18.69	■□□□□ 0.58
DDR1-231	ENST00000417521	TRIM22	Q8IYM9	498 aa		18.69	■□□□□ 0.58
DDR1-231	ENST00000417521	CCDC148	Q8NFR7	591 aa		18.69	■□□□□ 0.58
DDR1-231	ENST00000417521	BICD2	Q8TD16	824 aa		18.69	■□□□□ 0.58
DDR1-231	ENST00000417521	SEPT1	Q8WYJ6	367 aa		18.69	■□□□□ 0.58
DDR1-231	ENST00000417521	ZNF215	Q9UL58	517 aa	Predicted RBP	18.69	■□□□□ 0.58
DDR1-231	ENST00000417521	TMEM265	A0A087WTH1	108 aa		18.68	■□□□□ 0.58
DDR1-231	ENST00000417521	MEIS1	O00470	390 aa		18.68	■□□□□ 0.58
DDR1-231	ENST00000417521	PARN	O95453	639 aa	Known RBP	18.68	■□□□□ 0.58
DDR1-231	ENST00000417521	HOXC8	P31273	242 aa		18.68	■□□□□ 0.58
DDR1-231	ENST00000417521	ARHGAP4	P98171	946 aa		18.68	■□□□□ 0.58
DDR1-231	ENST00000417521	SP4	Q02446	784 aa		18.68	■□□□□ 0.58
DDR1-231	ENST00000417521	RABEP1	Q15276	862 aa		18.68	■□□□□ 0.58
DDR1-231	ENST00000417521	JAKMIP3	Q5VZ66	844 aa		18.68	■□□□□ 0.58
DDR1-231	ENST00000417521	OTOP2	Q7RTS6	562 aa		18.68	■□□□□ 0.58
DDR1-231	ENST00000417521	REXO1	Q8N1G1	1221 aa	Known RBP	18.68	■□□□□ 0.58
DDR1-231	ENST00000417521	CYP2W1	Q8TAV3	490 aa		18.68	■□□□□ 0.58
DDR1-231	ENST00000417521	DHX38	Q92620	1227 aa	Known RBP	18.68	■□□□□ 0.58
DDR1-231	ENST00000417521	SH3GLB2	Q9NR46	395 aa		18.68	■□□□□ 0.58
DDR1-231	ENST00000417521	TELO2	Q9Y4R8	837 aa		18.68	■□□□□ 0.58
DDR1-231	ENST00000417521	LAMA2	P24043	3122 aa	Known RBP	18.68	■□□□□ 0.58
DDR1-231	ENST00000417521	KIAA1217	Q5T5P2	1943 aa		18.68	■□□□□ 0.58
DDR1-231	ENST00000417521	C17orf102	A2RUQ5	167 aa		18.67	■□□□□ 0.58
DDR1-231	ENST00000417521	PPFIA3	O75145	1194 aa		18.67	■□□□□ 0.58
DDR1-231	ENST00000417521	CYP3A4	P08684	503 aa		18.67	■□□□□ 0.58
DDR1-231	ENST00000417521	SELP	P16109	830 aa		18.67	■□□□□ 0.58
DDR1-231	ENST00000417521	TCF7	P36402	384 aa	Predicted RBP	18.67	■□□□□ 0.58
DDR1-231	ENST00000417521	ZNF200	P98182	395 aa	Predicted RBP	18.67	■□□□□ 0.58
DDR1-231	ENST00000417521	SSRP1	Q08945	709 aa	Known RBP	18.67	■□□□□ 0.58
DDR1-231	ENST00000417521	UTP14C	Q5TAP6	766 aa	Known RBP	18.67	■□□□□ 0.58
DDR1-231	ENST00000417521	NIPA1	Q7RTP0	329 aa		18.67	■□□□□ 0.58
DDR1-231	ENST00000417521	DEFB128	Q7Z7B8	93 aa		18.67	■□□□□ 0.58
DDR1-231	ENST00000417521	CRYGN	Q8WXF5	182 aa		18.67	■□□□□ 0.58
DDR1-231	ENST00000417521	RNPEP	Q9H4A4	650 aa		18.67	■□□□□ 0.58
DDR1-231	ENST00000417521	CXXC1	Q9P0U4	656 aa	Predicted RBP	18.67	■□□□□ 0.58
DDR1-231	ENST00000417521	NFASC	O94856	1347 aa		18.67	■□□□□ 0.58
DDR1-231	ENST00000417521	GSTTP1	A0A1W2PQM5	241 aa		18.66	■□□□□ 0.58
DDR1-231	ENST00000417521	SMIM10L2A	P0DMW4	78 aa		18.66	■□□□□ 0.58
DDR1-231	ENST00000417521	SMIM10L2B	P0DMW5	78 aa		18.66	■□□□□ 0.58

Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms