RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 SCG3Q8WXD2 468 aaKnown RBP14.33□□□□□ -0.12
CCDC88A-204ENST00000413716 EXT2Q93063 718 aa14.33□□□□□ -0.12
CCDC88A-204ENST00000413716 PARVBQ9HBI1 364 aa14.33□□□□□ -0.12
CCDC88A-204ENST00000413716 EPB41L5Q9HCM4 733 aa14.33□□□□□ -0.12
CCDC88A-204ENST00000413716 BLOC1S6Q9UL45 172 aa14.33□□□□□ -0.12
CCDC88A-204ENST00000413716 SOX13Q9UN79 622 aa14.33□□□□□ -0.12
CCDC88A-204ENST00000413716 ZBED4O75132 1171 aa14.33□□□□□ -0.12
CCDC88A-204ENST00000413716 IL10P22301 178 aa14.33□□□□□ -0.12
CCDC88A-204ENST00000413716 RTL3Q8N8U3 475 aaKnown RBP14.33□□□□□ -0.12
CCDC88A-204ENST00000413716 RDH13Q8NBN7 331 aa14.33□□□□□ -0.12
CCDC88A-204ENST00000413716 MBIPQ9NS73 344 aa14.33□□□□□ -0.12
CCDC88A-204ENST00000413716 HDLBPQ00341 1268 aaKnown RBP14.33□□□□□ -0.12
CCDC88A-204ENST00000413716 MYL7Q01449 175 aa14.33□□□□□ -0.12
CCDC88A-204ENST00000413716 PTK2Q05397 1052 aa14.33□□□□□ -0.12
CCDC88A-204ENST00000413716 DHX9Q08211 1270 aaKnown RBP14.33□□□□□ -0.12
CCDC88A-204ENST00000413716 FAM81BQ96LP2 452 aa14.33□□□□□ -0.12
CCDC88A-204ENST00000413716 ARIH1Q9Y4X5 557 aaPredicted RBP14.33□□□□□ -0.12
CCDC88A-204ENST00000413716 MOCS3O95396 460 aa14.32□□□□□ -0.12
CCDC88A-204ENST00000413716 MAPK4P31152 587 aa14.32□□□□□ -0.12
CCDC88A-204ENST00000413716 LRRC8AQ8IWT6 810 aa14.32□□□□□ -0.12
CCDC88A-204ENST00000413716 BLZF1Q9H2G9 400 aa14.32□□□□□ -0.12
CCDC88A-204ENST00000413716 KIF14Q15058 1648 aa14.32□□□□□ -0.12
CCDC88A-204ENST00000413716 SNAP25P60880 206 aa14.32□□□□□ -0.12
CCDC88A-204ENST00000413716 RASSF7Q02833 373 aa14.32□□□□□ -0.12
CCDC88A-204ENST00000413716 GNL3Q9BVP2 549 aaKnown RBP eCLIP14.32□□□□□ -0.12
CCDC88A-204ENST00000413716 BIRC5O15392 142 aa14.32□□□□□ -0.12
CCDC88A-204ENST00000413716 ZNF445P59923 1031 aa14.32□□□□□ -0.12
CCDC88A-204ENST00000413716 TMPRSS15P98073 1019 aa14.32□□□□□ -0.12
CCDC88A-204ENST00000413716 KIF23Q02241 960 aaPredicted RBP14.32□□□□□ -0.12
CCDC88A-204ENST00000413716 INAQ16352 499 aa14.32□□□□□ -0.12
CCDC88A-204ENST00000413716 KRT77Q7Z794 578 aa14.32□□□□□ -0.12
CCDC88A-204ENST00000413716 WDR75Q8IWA0 830 aaKnown RBP14.32□□□□□ -0.12
CCDC88A-204ENST00000413716 TTC30BQ8N4P2 665 aa14.32□□□□□ -0.12
CCDC88A-204ENST00000413716 BTBD6Q96KE9 485 aa14.32□□□□□ -0.12
CCDC88A-204ENST00000413716 BEGAINQ9BUH8 593 aa14.32□□□□□ -0.12
CCDC88A-204ENST00000413716 NSUN2Q08J23 767 aaKnown RBP eCLIP14.32□□□□□ -0.12
CCDC88A-204ENST00000413716 CENPUQ71F23 418 aa14.32□□□□□ -0.12
CCDC88A-204ENST00000413716 C16orf62Q7Z3J2 963 aa14.32□□□□□ -0.12
CCDC88A-204ENST00000413716 TADA1Q96BN2 335 aa14.32□□□□□ -0.12
CCDC88A-204ENST00000413716 LSG1Q9H089 658 aaKnown RBP14.32□□□□□ -0.12
CCDC88A-204ENST00000413716 SF3B3Q15393 1217 aaKnown RBP14.32□□□□□ -0.12
CCDC88A-204ENST00000413716 CDH2P19022 906 aaPredicted RBP14.32□□□□□ -0.12
CCDC88A-204ENST00000413716 ARL4AP40617 200 aa14.32□□□□□ -0.12
CCDC88A-204ENST00000413716 HADHAP40939 763 aa14.32□□□□□ -0.12
CCDC88A-204ENST00000413716 NR1H3Q13133 447 aa14.32□□□□□ -0.12
CCDC88A-204ENST00000413716 IFNL2Q8IZJ0 200 aa14.32□□□□□ -0.12
CCDC88A-204ENST00000413716 RFWD2Q8NHY2 731 aa14.32□□□□□ -0.12
CCDC88A-204ENST00000413716 MICAL3Q7RTP6 2002 aa14.32□□□□□ -0.12
CCDC88A-204ENST00000413716 ARHGEF16Q5VV41 709 aa14.32□□□□□ -0.12
CCDC88A-204ENST00000413716 CYB5RLQ6IPT4 315 aa14.32□□□□□ -0.12
CCDC88A-204ENST00000413716 ARHGAP45Q92619 1136 aa14.32□□□□□ -0.12
CCDC88A-204ENST00000413716 METTL14Q9HCE5 456 aaKnown RBP14.32□□□□□ -0.12
CCDC88A-204ENST00000413716 CHUKO15111 745 aa14.31□□□□□ -0.12
CCDC88A-204ENST00000413716 PLTPP55058 493 aa14.31□□□□□ -0.12
CCDC88A-204ENST00000413716 TADA2BQ86TJ2 420 aa14.31□□□□□ -0.12
CCDC88A-204ENST00000413716 PITPNM3Q9BZ71 974 aa14.31□□□□□ -0.12
CCDC88A-204ENST00000413716 EHD2Q9NZN4 543 aa14.31□□□□□ -0.12
CCDC88A-204ENST00000413716 SOS2Q07890 1332 aaPredicted RBP14.31□□□□□ -0.12
CCDC88A-204ENST00000413716 MED7O43513 233 aa14.31□□□□□ -0.12
CCDC88A-204ENST00000413716 TP53BP2Q13625 1128 aa14.31□□□□□ -0.12
CCDC88A-204ENST00000413716 SYNDIG1LA6NDD5 238 aa14.31□□□□□ -0.12
CCDC88A-204ENST00000413716 NAA35Q5VZE5 725 aa14.31□□□□□ -0.12
CCDC88A-204ENST00000413716 TRMT44Q8IYL2 757 aaKnown RBP14.31□□□□□ -0.12
CCDC88A-204ENST00000413716 DENND2AQ9ULE3 1009 aa14.31□□□□□ -0.12
CCDC88A-204ENST00000413716 AFPP02771 609 aaKnown RBP14.31□□□□□ -0.12
CCDC88A-204ENST00000413716 CCDC149Q6ZUS6 474 aa14.31□□□□□ -0.12
CCDC88A-204ENST00000413716 TRIM63Q969Q1 353 aa14.31□□□□□ -0.12
CCDC88A-204ENST00000413716 FNDC3AQ9Y2H6 1198 aaKnown RBP14.31□□□□□ -0.12
CCDC88A-204ENST00000413716 TRIM13O60858 407 aa14.31□□□□□ -0.12
CCDC88A-204ENST00000413716 C1orf228Q6PIY5 440 aa14.31□□□□□ -0.12
CCDC88A-204ENST00000413716 RUBCNLQ9H714 662 aa14.31□□□□□ -0.12
CCDC88A-204ENST00000413716 ZNF556Q9HAH1 456 aa14.31□□□□□ -0.12
CCDC88A-204ENST00000413716 PHLPP2Q6ZVD8 1323 aa14.31□□□□□ -0.12
CCDC88A-204ENST00000413716 CC2D2AQ9P2K1 1620 aa14.31□□□□□ -0.12
CCDC88A-204ENST00000413716 EIF2AK4Q9P2K8 1649 aaKnown RBP14.31□□□□□ -0.12
CCDC88A-204ENST00000413716 SH3BP5LQ7L8J4 393 aa14.31□□□□□ -0.12
CCDC88A-204ENST00000413716 G3BP2Q9UN86 482 aaKnown RBP14.31□□□□□ -0.12
CCDC88A-204ENST00000413716 TSC22D1Q15714 1073 aa14.31□□□□□ -0.12
CCDC88A-204ENST00000413716 RBM46Q8TBY0 533 aaKnown RBP14.31□□□□□ -0.12
CCDC88A-204ENST00000413716 PYROXD1Q8WU10 500 aa14.31□□□□□ -0.12
CCDC88A-204ENST00000413716 SYBUQ9NX95 663 aa14.31□□□□□ -0.12
CCDC88A-204ENST00000413716 MAST3O60307 1309 aa14.31□□□□□ -0.12
CCDC88A-204ENST00000413716 EIF2S1P05198 315 aaKnown RBP14.31□□□□□ -0.12
CCDC88A-204ENST00000413716 PSMC6P62333 389 aa14.31□□□□□ -0.12
CCDC88A-204ENST00000413716 MESDQ14696 234 aa14.31□□□□□ -0.12
CCDC88A-204ENST00000413716 OLFML2BQ68BL8 750 aa14.31□□□□□ -0.12
CCDC88A-204ENST00000413716 PBKQ96KB5 322 aa14.31□□□□□ -0.12
CCDC88A-204ENST00000413716 ZNF215Q9UL58 517 aaPredicted RBP14.31□□□□□ -0.12
CCDC88A-204ENST00000413716 PTPN23Q9H3S7 1636 aa14.31□□□□□ -0.12
CCDC88A-204ENST00000413716 MYO1DO94832 1006 aa14.3□□□□□ -0.12
CCDC88A-204ENST00000413716 SLCO1A2P46721 670 aa14.3□□□□□ -0.12
CCDC88A-204ENST00000413716 MFAP3P55082 362 aa14.3□□□□□ -0.12
CCDC88A-204ENST00000413716 MYO1EQ12965 1108 aa14.3□□□□□ -0.12
CCDC88A-204ENST00000413716 TESK2Q96S53 571 aa14.3□□□□□ -0.12
CCDC88A-204ENST00000413716 CAPN1P07384 714 aa14.3□□□□□ -0.12
CCDC88A-204ENST00000413716 PMS2P54278 862 aa14.3□□□□□ -0.12
CCDC88A-204ENST00000413716 ANKRD36BP1Q96IX9 119 aa14.3□□□□□ -0.12
CCDC88A-204ENST00000413716 CAPZA2P47755 286 aa14.3□□□□□ -0.12
CCDC88A-204ENST00000413716 FAM178BQ8IXR5 827 aa14.3□□□□□ -0.12
CCDC88A-204ENST00000413716 NEK9Q8TD19 979 aa14.3□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms