RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 MYMKA6NI61 221 aa6.32□□□□□ -1.4
CCDC88A-203ENST00000412148 ZNF233A6NK53 670 aa6.32□□□□□ -1.4
CCDC88A-203ENST00000412148 PLEKP08567 350 aaPredicted RBP6.32□□□□□ -1.4
CCDC88A-203ENST00000412148 FCER1AP12319 257 aa6.32□□□□□ -1.4
CCDC88A-203ENST00000412148 RASA1P20936 1047 aa6.32□□□□□ -1.4
CCDC88A-203ENST00000412148 LSP1P33241 339 aa6.32□□□□□ -1.4
CCDC88A-203ENST00000412148 MDH1P40925 334 aaKnown RBP6.32□□□□□ -1.4
CCDC88A-203ENST00000412148 NAP1L1P55209 391 aaKnown RBP6.32□□□□□ -1.4
CCDC88A-203ENST00000412148 LMNB2Q03252 620 aa6.32□□□□□ -1.4
CCDC88A-203ENST00000412148 ITGB3BPQ13352 177 aaPredicted RBP6.32□□□□□ -1.4
CCDC88A-203ENST00000412148 MTMR3Q13615 1198 aa6.32□□□□□ -1.4
CCDC88A-203ENST00000412148 PTGISQ16647 500 aa6.32□□□□□ -1.4
CCDC88A-203ENST00000412148 NFIL3Q16649 462 aa6.32□□□□□ -1.4
CCDC88A-203ENST00000412148 CFAP58Q5T655 872 aa6.32□□□□□ -1.4
CCDC88A-203ENST00000412148 RC3H1Q5TC82 1133 aaKnown RBP6.32□□□□□ -1.4
CCDC88A-203ENST00000412148 SFMBT2Q5VUG0 894 aa6.32□□□□□ -1.4
CCDC88A-203ENST00000412148 MOXD1Q6UVY6 613 aa6.32□□□□□ -1.4
CCDC88A-203ENST00000412148 CCDC91Q7Z6B0 441 aa6.32□□□□□ -1.4
CCDC88A-203ENST00000412148 USP38Q8NB14 1042 aa6.32□□□□□ -1.4
CCDC88A-203ENST00000412148 HDAC7Q8WUI4 952 aa6.32□□□□□ -1.4
CCDC88A-203ENST00000412148 RIN2Q8WYP3 895 aaPredicted RBP6.32□□□□□ -1.4
CCDC88A-203ENST00000412148 CENPTQ96BT3 561 aa6.32□□□□□ -1.4
CCDC88A-203ENST00000412148 LRRC45Q96CN5 670 aa6.32□□□□□ -1.4
CCDC88A-203ENST00000412148 RRP36Q96EU6 259 aaKnown RBP6.32□□□□□ -1.4
CCDC88A-203ENST00000412148 TMEM47Q9BQJ4 181 aa6.32□□□□□ -1.4
CCDC88A-203ENST00000412148 MXD3Q9BW11 206 aa6.32□□□□□ -1.4
CCDC88A-203ENST00000412148 NT5C3AQ9H0P0 336 aa6.32□□□□□ -1.4
CCDC88A-203ENST00000412148 GLT8D2Q9H1C3 349 aa6.32□□□□□ -1.4
CCDC88A-203ENST00000412148 TAF1DQ9H5J8 278 aaPredicted RBP6.32□□□□□ -1.4
CCDC88A-203ENST00000412148 MKNK2Q9HBH9 465 aa6.32□□□□□ -1.4
CCDC88A-203ENST00000412148 TMBIM4Q9HC24 238 aa6.32□□□□□ -1.4
CCDC88A-203ENST00000412148 RBM12Q9NTZ6 932 aaKnown RBP6.32□□□□□ -1.4
CCDC88A-203ENST00000412148 SALL4Q9UJQ4 1053 aa6.32□□□□□ -1.4
CCDC88A-203ENST00000412148 SSUH2Q9Y2M2 353 aa6.32□□□□□ -1.4
CCDC88A-203ENST00000412148 ZNF646O15015 1829 aaPredicted RBP6.32□□□□□ -1.4
CCDC88A-203ENST00000412148 GTPBP10A4D1E9 387 aaKnown RBP6.32□□□□□ -1.4
CCDC88A-203ENST00000412148 H0YGN5 161 aa6.32□□□□□ -1.4
CCDC88A-203ENST00000412148 EPHB6O15197 1021 aa6.32□□□□□ -1.4
CCDC88A-203ENST00000412148 BAG3O95817 575 aa6.32□□□□□ -1.4
CCDC88A-203ENST00000412148 PLCG2P16885 1265 aa6.32□□□□□ -1.4
CCDC88A-203ENST00000412148 INPP5BP32019 993 aa6.32□□□□□ -1.4
CCDC88A-203ENST00000412148 CLK2P49760 499 aaKnown RBP6.32□□□□□ -1.4
CCDC88A-203ENST00000412148 USP11P51784 963 aa6.32□□□□□ -1.4
CCDC88A-203ENST00000412148 SMTNP53814 917 aa6.32□□□□□ -1.4
CCDC88A-203ENST00000412148 TCEAL1Q15170 157 aa6.32□□□□□ -1.4
CCDC88A-203ENST00000412148 ASPRV1Q53RT3 343 aa6.32□□□□□ -1.4
CCDC88A-203ENST00000412148 FAM47AQ5JRC9 791 aa6.32□□□□□ -1.4
CCDC88A-203ENST00000412148 DPY19L2P1Q6NXN4 242 aa6.32□□□□□ -1.4
CCDC88A-203ENST00000412148 NFRKBQ6P4R8 1299 aa6.32□□□□□ -1.4
CCDC88A-203ENST00000412148 RUFY4Q6ZNE9 571 aa6.32□□□□□ -1.4
CCDC88A-203ENST00000412148 KRT26Q7Z3Y9 468 aa6.32□□□□□ -1.4
CCDC88A-203ENST00000412148 FMNL3Q8IVF7 1028 aa6.32□□□□□ -1.4
CCDC88A-203ENST00000412148 REXO1Q8N1G1 1221 aaKnown RBP6.32□□□□□ -1.4
CCDC88A-203ENST00000412148 RASSF8Q8NHQ8 419 aa6.32□□□□□ -1.4
CCDC88A-203ENST00000412148 GPKOWQ92917 476 aaPredicted RBP eCLIP6.32□□□□□ -1.4
CCDC88A-203ENST00000412148 DNAJC19Q96DA6 116 aa6.32□□□□□ -1.4
CCDC88A-203ENST00000412148 MBOAT7Q96N66 472 aa6.32□□□□□ -1.4
CCDC88A-203ENST00000412148 SLITRK6Q9H5Y7 841 aa6.32□□□□□ -1.4
CCDC88A-203ENST00000412148 MLXIPQ9HAP2 919 aa6.32□□□□□ -1.4
CCDC88A-203ENST00000412148 BTG4Q9NY30 223 aa6.32□□□□□ -1.4
CCDC88A-203ENST00000412148 LEMD3Q9Y2U8 911 aa6.32□□□□□ -1.4
CCDC88A-203ENST00000412148 PCDHA2Q9Y5H9 948 aa6.32□□□□□ -1.4
CCDC88A-203ENST00000412148 NFS1Q9Y697 457 aa6.32□□□□□ -1.4
CCDC88A-203ENST00000412148 TMCO5BA8MYB1 307 aa6.31□□□□□ -1.4
CCDC88A-203ENST00000412148 KLRF2D3W0D1 207 aa6.31□□□□□ -1.4
CCDC88A-203ENST00000412148 TLR2O60603 784 aa6.31□□□□□ -1.4
CCDC88A-203ENST00000412148 COBLO75128 1261 aa6.31□□□□□ -1.4
CCDC88A-203ENST00000412148 GLI1P08151 1106 aa6.31□□□□□ -1.4
CCDC88A-203ENST00000412148 NR1D1P20393 614 aa6.31□□□□□ -1.4
CCDC88A-203ENST00000412148 ECHS1P30084 290 aa6.31□□□□□ -1.4
CCDC88A-203ENST00000412148 HNRNPH1P31943 449 aaKnown RBP6.31□□□□□ -1.4
CCDC88A-203ENST00000412148 RPS8P62241 208 aaKnown RBP6.31□□□□□ -1.4
CCDC88A-203ENST00000412148 ITPK1Q13572 414 aa6.31□□□□□ -1.4
CCDC88A-203ENST00000412148 EZH2Q15910 746 aaKnown RBP6.31□□□□□ -1.4
CCDC88A-203ENST00000412148 LACTB2Q53H82 288 aaPredicted RBP6.31□□□□□ -1.4
CCDC88A-203ENST00000412148 CCDC50Q8IVM0 306 aa6.31□□□□□ -1.4
CCDC88A-203ENST00000412148 MYOCDQ8IZQ8 938 aa6.31□□□□□ -1.4
CCDC88A-203ENST00000412148 LRRC57Q8N9N7 239 aa6.31□□□□□ -1.4
CCDC88A-203ENST00000412148 ARL8AQ96BM9 186 aa6.31□□□□□ -1.4
CCDC88A-203ENST00000412148 GANQ9H2C0 597 aa6.31□□□□□ -1.4
CCDC88A-203ENST00000412148 VCPKMTQ9H867 229 aa6.31□□□□□ -1.4
CCDC88A-203ENST00000412148 SLC12A6Q9UHW9 1150 aa6.31□□□□□ -1.4
CCDC88A-203ENST00000412148 TFR2Q9UP52 801 aa6.31□□□□□ -1.4
CCDC88A-203ENST00000412148 SIPA1L1O43166 1804 aa6.31□□□□□ -1.4
CCDC88A-203ENST00000412148 SMCO2A6NFE2 343 aa6.31□□□□□ -1.4
CCDC88A-203ENST00000412148 EDIL3O43854 480 aa6.31□□□□□ -1.4
CCDC88A-203ENST00000412148 CCNT1O60563 726 aaKnown RBP6.31□□□□□ -1.4
CCDC88A-203ENST00000412148 TRIM37O94972 964 aa6.31□□□□□ -1.4
CCDC88A-203ENST00000412148 TSPY3P0CV98 308 aa6.31□□□□□ -1.4
CCDC88A-203ENST00000412148 TSPY8P0CW00 308 aa6.31□□□□□ -1.4
CCDC88A-203ENST00000412148 GHRP10912 638 aa6.31□□□□□ -1.4
CCDC88A-203ENST00000412148 ATP6V1AP38606 617 aa6.31□□□□□ -1.4
CCDC88A-203ENST00000412148 SLC1A4P43007 532 aa6.31□□□□□ -1.4
CCDC88A-203ENST00000412148 NAPAP54920 295 aa6.31□□□□□ -1.4
CCDC88A-203ENST00000412148 ACTN3Q08043 901 aaPredicted RBP6.31□□□□□ -1.4
CCDC88A-203ENST00000412148 BMT2Q1RMZ1 405 aa6.31□□□□□ -1.4
CCDC88A-203ENST00000412148 ERFEQ4G0M1 354 aa6.31□□□□□ -1.4
CCDC88A-203ENST00000412148 FAM83BQ5T0W9 1011 aa6.31□□□□□ -1.4
CCDC88A-203ENST00000412148 NAA35Q5VZE5 725 aa6.31□□□□□ -1.4
CCDC88A-203ENST00000412148 BARGINQ6ZT62 677 aa6.31□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms