RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 INPP5AQ14642 412 aa13.86□□□□□ -0.19
COL6A3-206ENST00000409809 EXOC3L4Q17RC7 722 aa13.86□□□□□ -0.19
COL6A3-206ENST00000409809 TTLL11Q8NHH1 800 aa13.86□□□□□ -0.19
COL6A3-206ENST00000409809 FOXP3Q9BZS1 431 aa13.86□□□□□ -0.19
COL6A3-206ENST00000409809 STRIP2Q9ULQ0 834 aa13.86□□□□□ -0.19
COL6A3-206ENST00000409809 DNMT1P26358 1616 aaKnown RBP13.86□□□□□ -0.19
COL6A3-206ENST00000409809 DDIT3P35638 169 aa13.86□□□□□ -0.19
COL6A3-206ENST00000409809 TBRG4Q969Z0 631 aaKnown RBP eCLIP13.86□□□□□ -0.19
COL6A3-206ENST00000409809 SGSM3Q96HU1 749 aa13.86□□□□□ -0.19
COL6A3-206ENST00000409809 L3MBTL1Q9Y468 752 aa13.86□□□□□ -0.19
COL6A3-206ENST00000409809 MAGEA13PA6NCF6 341 aa13.86□□□□□ -0.19
COL6A3-206ENST00000409809 WDR47O94967 919 aa13.86□□□□□ -0.19
COL6A3-206ENST00000409809 KMT5BQ4FZB7 885 aa13.86□□□□□ -0.19
COL6A3-206ENST00000409809 TCP11X2Q5H9J9 407 aa13.86□□□□□ -0.19
COL6A3-206ENST00000409809 LRRC63Q05C16 580 aa13.86□□□□□ -0.19
COL6A3-206ENST00000409809 ANKRD7Q92527 254 aa13.86□□□□□ -0.19
COL6A3-206ENST00000409809 RNF34Q969K3 372 aa13.86□□□□□ -0.19
COL6A3-206ENST00000409809 AATFQ9NY61 560 aaKnown RBP eCLIP13.86□□□□□ -0.19
COL6A3-206ENST00000409809 KIF17Q9P2E2 1029 aa13.86□□□□□ -0.19
COL6A3-206ENST00000409809 ANXA13P27216 316 aa13.86□□□□□ -0.19
COL6A3-206ENST00000409809 QKIQ96PU8 341 aaKnown RBP eCLIP13.86□□□□□ -0.19
COL6A3-206ENST00000409809 NOVA2Q9UNW9 492 aaKnown RBP13.86□□□□□ -0.19
COL6A3-206ENST00000409809 PLTPP55058 493 aa13.86□□□□□ -0.19
COL6A3-206ENST00000409809 RUNX1T1Q06455 604 aa13.86□□□□□ -0.19
COL6A3-206ENST00000409809 BYSLQ13895 437 aaKnown RBP13.86□□□□□ -0.19
COL6A3-206ENST00000409809 WWP1Q9H0M0 922 aa13.86□□□□□ -0.19
COL6A3-206ENST00000409809 POC1B-GALNT4F8VUJ3 575 aa13.86□□□□□ -0.19
COL6A3-206ENST00000409809 TRADDQ15628 312 aa13.86□□□□□ -0.19
COL6A3-206ENST00000409809 TRIM69Q86WT6 500 aa13.86□□□□□ -0.19
COL6A3-206ENST00000409809 TRPV6Q9H1D0 765 aa13.86□□□□□ -0.19
COL6A3-206ENST00000409809 RAD21L1Q9H4I0 556 aa13.86□□□□□ -0.19
COL6A3-206ENST00000409809 XPO1O14980 1071 aaKnown RBP13.85□□□□□ -0.19
COL6A3-206ENST00000409809 NDUFA5Q16718 116 aa13.85□□□□□ -0.19
COL6A3-206ENST00000409809 ZNF555Q8NEP9 628 aa13.85□□□□□ -0.19
COL6A3-206ENST00000409809 COQ7Q99807 217 aa13.85□□□□□ -0.19
COL6A3-206ENST00000409809 PITPNM2Q9BZ72 1349 aa13.85□□□□□ -0.19
COL6A3-206ENST00000409809 NLRP11P59045 1033 aaKnown RBP13.85□□□□□ -0.19
COL6A3-206ENST00000409809 ADCK1Q86TW2 530 aa13.85□□□□□ -0.19
COL6A3-206ENST00000409809 RSPH1Q8WYR4 309 aa13.85□□□□□ -0.19
COL6A3-206ENST00000409809 TAF1DQ9H5J8 278 aaPredicted RBP13.85□□□□□ -0.19
COL6A3-206ENST00000409809 MTMR6Q9Y217 621 aa13.85□□□□□ -0.19
COL6A3-206ENST00000409809 PALM2-AKAP2B1ALY0 433 aaPredicted RBP13.85□□□□□ -0.19
COL6A3-206ENST00000409809 KRT6AP02538 564 aa13.85□□□□□ -0.19
COL6A3-206ENST00000409809 KRT6BP04259 564 aa13.85□□□□□ -0.19
COL6A3-206ENST00000409809 KRT6CP48668 564 aa13.85□□□□□ -0.19
COL6A3-206ENST00000409809 KLC2Q9H0B6 622 aa13.85□□□□□ -0.19
COL6A3-206ENST00000409809 DKK3Q9UBP4 350 aa13.85□□□□□ -0.19
COL6A3-206ENST00000409809 COL4A3BPQ9Y5P4 624 aa13.85□□□□□ -0.19
COL6A3-206ENST00000409809 TUBA4AP68366 448 aa13.85□□□□□ -0.19
COL6A3-206ENST00000409809 DSG1Q02413 1049 aa13.85□□□□□ -0.19
COL6A3-206ENST00000409809 TAF1BQ53T94 588 aaPredicted RBP13.85□□□□□ -0.19
COL6A3-206ENST00000409809 EIF4G3O43432 1585 aaKnown RBP13.85□□□□□ -0.19
COL6A3-206ENST00000409809 TRPM2O94759 1503 aa13.85□□□□□ -0.19
COL6A3-206ENST00000409809 PPP1R37O75864 691 aa13.85□□□□□ -0.19
COL6A3-206ENST00000409809 ALCAMQ13740 583 aa13.85□□□□□ -0.19
COL6A3-206ENST00000409809 LONRF3Q496Y0 759 aa13.85□□□□□ -0.19
COL6A3-206ENST00000409809 AASDHQ4L235 1098 aaPredicted RBP13.85□□□□□ -0.19
COL6A3-206ENST00000409809 SYDE1Q6ZW31 735 aaPredicted RBP13.85□□□□□ -0.19
COL6A3-206ENST00000409809 SETD3Q86TU7 594 aaPredicted RBP13.85□□□□□ -0.19
COL6A3-206ENST00000409809 PLD3Q8IV08 490 aa13.85□□□□□ -0.19
COL6A3-206ENST00000409809 TNIP2Q8NFZ5 429 aa13.85□□□□□ -0.19
COL6A3-206ENST00000409809 HNRNPLLQ8WVV9 542 aaKnown RBP13.85□□□□□ -0.19
COL6A3-206ENST00000409809 ZNF212Q9UDV6 495 aa13.85□□□□□ -0.19
COL6A3-206ENST00000409809 RASA4BC9J798 803 aa13.85□□□□□ -0.19
COL6A3-206ENST00000409809 RASA4O43374 803 aa13.85□□□□□ -0.19
COL6A3-206ENST00000409809 PPARGP37231 505 aaPredicted RBP13.85□□□□□ -0.19
COL6A3-206ENST00000409809 VHLP40337 213 aa13.85□□□□□ -0.19
COL6A3-206ENST00000409809 TMED8Q6PL24 325 aaPredicted RBP13.85□□□□□ -0.19
COL6A3-206ENST00000409809 PIK3AP1Q6ZUJ8 805 aa13.85□□□□□ -0.19
COL6A3-206ENST00000409809 PARVGQ9HBI0 331 aa13.85□□□□□ -0.19
COL6A3-206ENST00000409809 KIAA0232Q92628 1395 aa13.85□□□□□ -0.19
COL6A3-206ENST00000409809 SGK1O00141 431 aa13.85□□□□□ -0.19
COL6A3-206ENST00000409809 CDC27P30260 824 aa13.85□□□□□ -0.19
COL6A3-206ENST00000409809 CCDC127Q96BQ5 260 aa13.85□□□□□ -0.19
COL6A3-206ENST00000409809 GCOM2Q9BZD3 368 aaPredicted RBP13.85□□□□□ -0.19
COL6A3-206ENST00000409809 ZSWIM6Q9HCJ5 1215 aa13.85□□□□□ -0.19
COL6A3-206ENST00000409809 RGL1Q9NZL6 768 aa13.85□□□□□ -0.19
COL6A3-206ENST00000409809 RNF103-CHMP3A0A140T963 221 aa13.84□□□□□ -0.19
COL6A3-206ENST00000409809 RFX1P22670 979 aa13.84□□□□□ -0.19
COL6A3-206ENST00000409809 DHX34Q14147 1143 aaKnown RBP13.84□□□□□ -0.19
COL6A3-206ENST00000409809 KIAA0556O60303 1618 aa13.84□□□□□ -0.19
COL6A3-206ENST00000409809 WASLO00401 505 aaPredicted RBP13.84□□□□□ -0.19
COL6A3-206ENST00000409809 HSPA2P54652 639 aa13.84□□□□□ -0.19
COL6A3-206ENST00000409809 KBTBD3Q8NAB2 608 aa13.84□□□□□ -0.19
COL6A3-206ENST00000409809 PAPOLBQ9NRJ5 636 aaKnown RBP13.84□□□□□ -0.19
COL6A3-206ENST00000409809 ATAD3AQ9NVI7 634 aa13.84□□□□□ -0.19
COL6A3-206ENST00000409809 GSNP06396 782 aa13.84□□□□□ -0.19
COL6A3-206ENST00000409809 PDCLQ13371 301 aa13.84□□□□□ -0.19
COL6A3-206ENST00000409809 TSC22D1Q15714 1073 aa13.84□□□□□ -0.19
COL6A3-206ENST00000409809 ELAC2Q9BQ52 826 aaKnown RBP13.84□□□□□ -0.19
COL6A3-206ENST00000409809 MED23Q9ULK4 1368 aa13.84□□□□□ -0.19
COL6A3-206ENST00000409809 PDE5AO76074 875 aa13.84□□□□□ -0.19
COL6A3-206ENST00000409809 SLC39A14Q15043 492 aa13.84□□□□□ -0.19
COL6A3-206ENST00000409809 ANTXR1Q9H6X2 564 aa13.84□□□□□ -0.19
COL6A3-206ENST00000409809 A6NJR5 290 aa13.84□□□□□ -0.19
COL6A3-206ENST00000409809 H7C0S8 307 aa13.84□□□□□ -0.19
COL6A3-206ENST00000409809 GAP43P17677 238 aa13.84□□□□□ -0.19
COL6A3-206ENST00000409809 ARHGAP22Q7Z5H3 698 aa13.84□□□□□ -0.19
COL6A3-206ENST00000409809 OTUB1Q96FW1 271 aaPredicted RBP13.84□□□□□ -0.19
COL6A3-206ENST00000409809 VPS39Q96JC1 886 aa13.84□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms